BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0538.0021.p (227 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_782493.1| ABC transporter ATP-binding protein [Clostridiu... 409 e-113 ref|NP_347165.1| ABC transporter, ATPase component [Clostridium ... 389 e-107 ref|ZP_00060008.1| COG1136: ABC-type antimicrobial peptide trans... 344 8e-94 ref|NP_782408.1| ABC transporter ATP-binding protein [Clostridiu... 305 4e-82 ref|NP_691280.1| ABC transporter ATP-binding protein [Oceanobaci... 303 2e-81 >ref|NP_782493.1| ABC transporter ATP-binding protein [Clostridium tetani E88] gb|AAO36430.1| ABC transporter ATP-binding protein [Clostridium tetani E88] Length = 234 Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust. Identities = 211/227 (92%), Positives = 220/227 (96%) Query: 1 MEFLKIENLCKLYGKAENQVTALDHVSLTLEKGEFTAIIGSSGSGKSTLLHIIGGVDVPT 60 MEFL+IENLCK+YGK ENQVTALDHVSLT+EKGEFTAIIGSSGSGKSTLLHII GVDVPT Sbjct: 8 MEFLRIENLCKVYGKGENQVTALDHVSLTIEKGEFTAIIGSSGSGKSTLLHIIAGVDVPT 67 Query: 61 SGKVYLEGQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKRKVNGE 120 SGKVYL+GQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKRKVN E Sbjct: 68 SGKVYLDGQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKRKVNEE 127 Query: 121 RLNDLLEMLGLQDRKTHLPNQLSGGQQQRVSIGRALMNAPAVMLADEPTGSLDSRNGHEI 180 RLNDLL++LGL+DRK HLPNQLSGGQQQRVSIGRALMNAPAVMLADEPTGSLDSRNGHEI Sbjct: 128 RLNDLLDLLGLKDRKMHLPNQLSGGQQQRVSIGRALMNAPAVMLADEPTGSLDSRNGHEI 187 Query: 181 IKLLKESNQKYGQTLLLVTHDENIALQADRIIGISDGKVVRDERVRP 227 I LLK SNQKY QTL++VTHDENIALQADRIIGISDGKVVRDERVRP Sbjct: 188 INLLKLSNQKYQQTLIVVTHDENIALQADRIIGISDGKVVRDERVRP 234 >ref|NP_347165.1| ABC transporter, ATPase component [Clostridium acetobutylicum] pir||F96964 ABC transporter, ATPase component CAC0526 [imported] - Clostridium acetobutylicum gb|AAK78505.1| ABC transporter, ATPase component [Clostridium acetobutylicum] Length = 227 Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust. Identities = 202/226 (89%), Positives = 217/226 (96%) Query: 1 MEFLKIENLCKLYGKAENQVTALDHVSLTLEKGEFTAIIGSSGSGKSTLLHIIGGVDVPT 60 MEFLK+ENLCK+YGK EN+VTALD++SLT+EKG FT+IIGSSGSGKSTLLH I GVDVPT Sbjct: 1 MEFLKVENLCKVYGKGENKVTALDNISLTIEKGGFTSIIGSSGSGKSTLLHAIAGVDVPT 60 Query: 61 SGKVYLEGQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKRKVNGE 120 SGKVYLEGQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKRKVN E Sbjct: 61 SGKVYLEGQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKRKVNKE 120 Query: 121 RLNDLLEMLGLQDRKTHLPNQLSGGQQQRVSIGRALMNAPAVMLADEPTGSLDSRNGHEI 180 RLN+LLE+LGL+ R+ HLPNQLSGGQQQRVSIGRALMNAPAVML DEPTGSLDS+NGHEI Sbjct: 121 RLNELLELLGLKGREKHLPNQLSGGQQQRVSIGRALMNAPAVMLGDEPTGSLDSKNGHEI 180 Query: 181 IKLLKESNQKYGQTLLLVTHDENIALQADRIIGISDGKVVRDERVR 226 IKLLKESN+KY QTL++VTHDENIALQADRIIGISDGKVVRDERVR Sbjct: 181 IKLLKESNKKYNQTLIVVTHDENIALQADRIIGISDGKVVRDERVR 226 >ref|ZP_00060008.1| COG1136: ABC-type antimicrobial peptide transport system, ATPase component [Clostridium thermocellum ATCC 27405] Length = 231 Score = 344 bits (883), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 161/226 (71%), Positives = 199/226 (88%) Query: 1 MEFLKIENLCKLYGKAENQVTALDHVSLTLEKGEFTAIIGSSGSGKSTLLHIIGGVDVPT 60 ME L++EN+ K YG EN V ALD VS +++KGEF AI+G SGSGKSTLLHI+GGVD PT Sbjct: 5 MEILRVENVTKTYGTGENMVRALDGVSFSVKKGEFIAIVGPSGSGKSTLLHILGGVDKPT 64 Query: 61 SGKVYLEGQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKRKVNGE 120 SGKV+++G+DVYAQ++E+LAIFRRRQVGLIYQF+NLIP LNVVENITLP+LMD RKVN E Sbjct: 65 SGKVFMDGKDVYAQNDEQLAIFRRRQVGLIYQFYNLIPVLNVVENITLPVLMDGRKVNKE 124 Query: 121 RLNDLLEMLGLQDRKTHLPNQLSGGQQQRVSIGRALMNAPAVMLADEPTGSLDSRNGHEI 180 RL +L+E L L+ R+ HLPNQLSGGQQQRVSIGRAL+NAP+V+LADEPTG+LDS+N EI Sbjct: 125 RLEELIETLNLKGRENHLPNQLSGGQQQRVSIGRALINAPSVVLADEPTGNLDSKNSQEI 184 Query: 181 IKLLKESNQKYGQTLLLVTHDENIALQADRIIGISDGKVVRDERVR 226 ++LLK SN+KY QTL+++THDENIALQA+R+I I DG+++RDE +R Sbjct: 185 VELLKLSNKKYNQTLIVITHDENIALQANRVIAIEDGRIIRDEVIR 230 >ref|NP_782408.1| ABC transporter ATP-binding protein [Clostridium tetani E88] gb|AAO36345.1| ABC transporter ATP-binding protein [Clostridium tetani E88] Length = 226 Score = 305 bits (782), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 140/226 (61%), Positives = 187/226 (82%) Query: 1 MEFLKIENLCKLYGKAENQVTALDHVSLTLEKGEFTAIIGSSGSGKSTLLHIIGGVDVPT 60 ME LK+ENL K+YG+ N+V AL +VS +E+GEF AI+G+SGSGKSTLLH+IGG+D PT Sbjct: 1 MEILKVENLSKIYGEGNNRVEALRNVSFAIERGEFVAIVGASGSGKSTLLHMIGGLDKPT 60 Query: 61 SGKVYLEGQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKRKVNGE 120 SGKVY++G+D+Y + LAIFRRR VG ++QF NLIP LNV ENI+LP L+DK K++ Sbjct: 61 SGKVYIDGEDIYKLKEDNLAIFRRRNVGFVFQFFNLIPVLNVEENISLPALLDKDKIDKA 120 Query: 121 RLNDLLEMLGLQDRKTHLPNQLSGGQQQRVSIGRALMNAPAVMLADEPTGSLDSRNGHEI 180 L +++EMLGL++R THLP++LSGGQQQRVSIGRAL+N P+++LADEPTG+LDS+N E+ Sbjct: 121 YLKEVVEMLGLKERITHLPSELSGGQQQRVSIGRALINKPSIILADEPTGNLDSKNSKEV 180 Query: 181 IKLLKESNQKYGQTLLLVTHDENIALQADRIIGISDGKVVRDERVR 226 I+LLK S++KY QTL+++THD NIA QADR+I I DG++ D ++R Sbjct: 181 IELLKYSSKKYNQTLIIITHDMNIAEQADRVINIVDGEIKSDNKIR 226 >ref|NP_691280.1| ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC12315.1| ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] Length = 227 Score = 303 bits (775), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 140/227 (61%), Positives = 184/227 (81%) Query: 1 MEFLKIENLCKLYGKAENQVTALDHVSLTLEKGEFTAIIGSSGSGKSTLLHIIGGVDVPT 60 ME LKIENL K+YGK + V ALD +S +++KGEF AIIG SGSGKSTLLH++GGVD PT Sbjct: 1 MEMLKIENLSKVYGKGDTAVKALDDISFSVDKGEFVAIIGPSGSGKSTLLHLLGGVDRPT 60 Query: 61 SGKVYLEGQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKRKVNGE 120 GKV+++G D+Y S +LAIFRRRQ+GLIYQF+NL+P L V ENITLP+L+D KV+ + Sbjct: 61 EGKVFVDGTDMYELSETQLAIFRRRQIGLIYQFYNLLPILTVEENITLPLLLDSHKVDQK 120 Query: 121 RLNDLLEMLGLQDRKTHLPNQLSGGQQQRVSIGRALMNAPAVMLADEPTGSLDSRNGHEI 180 +++++LGLQ R +LPNQLSGGQQQRVSIGRA+++ P+++LADEPTG+LDS N EI Sbjct: 121 HFKEIVDILGLQKRIEYLPNQLSGGQQQRVSIGRAIISNPSIILADEPTGNLDSENSKEI 180 Query: 181 IKLLKESNQKYGQTLLLVTHDENIALQADRIIGISDGKVVRDERVRP 227 + LLK N+ Y QTL+++THD+ IALQADR+I I DG++ +DE +RP Sbjct: 181 VDLLKMFNRTYNQTLVVITHDDRIALQADRVISIEDGRIAKDEVIRP 227 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.136 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 328,605,653 Number of extensions: 13754447 Number of successful extensions: 112971 Number of sequences better than 1.0e-05: 21616 Number of HSP's gapped: 87892 Number of HSP's successfully gapped: 23142 Length of query: 227 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 106 Effective length of database: 428,710,599 Effective search space: 45443323494 Effective search space used: 45443323494 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 124 (52.4 bits)