BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0538.0020.p (861 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_782492.1| ABC transporter ATP-binding protein [Clostridiu... 1110 0.0 ref|NP_347166.1| Predicted permease, domain duplication [Clostri... 1014 0.0 ref|ZP_00060009.1| COG0577: ABC-type antimicrobial peptide trans... 323 8e-87 ref|NP_691281.1| hypothetical protein OB0360 [Oceanobacillus ihe... 197 8e-49 ref|NP_782039.1| putative permease [Clostridium tetani E88] >gi|... 154 1e-35 >ref|NP_782492.1| ABC transporter ATP-binding protein [Clostridium tetani E88] gb|AAO36429.1| ABC transporter ATP-binding protein [Clostridium tetani E88] Length = 862 Score = 1110 bits (2872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 564/869 (64%), Positives = 642/869 (73%), Gaps = 15/869 (1%) Query: 1 MNIFNKVTLQSMKKSRTRTIVTIIGVVLSAAMITGVATFGVSLLNYMANGAAQKYGGWHV 60 MNIFNK+TLQ MKKSRTRTIVT+IGV+LSAAMIT VATFG SLLN++ NG+ KYG WHV Sbjct: 1 MNIFNKITLQGMKKSRTRTIVTVIGVILSAAMITAVATFGTSLLNFLVNGSIVKYGDWHV 60 Query: 61 EFVNVDSSFTQERALDKGVANSATVENIGYAKLDGGKNPKKPYLFMAGFSKKAFDTLPIN 120 EF++VDSSF QER D GVAN+ ENIGYA LDGGK+P+KPYLF+AGFS++AFDTLPI+ Sbjct: 61 EFLDVDSSFVQERTHDNGVANTVVFENIGYATLDGGKSPEKPYLFLAGFSEEAFDTLPIS 120 Query: 121 LMSGRLPENSGEILVPMSAEVNSGVNFAEGDTLSLAVGNRMNGNKNLGQHDPYISG---- 176 L+SGRLPENS EILVP GV F GDTLSLAVG R++GNKNLGQHDPY+SG Sbjct: 121 LISGRLPENSEEILVPAHVAAKGGVRFTVGDTLSLAVGRRIDGNKNLGQHDPYLSGGESG 180 Query: 177 --KETLVPKAKRTYNVVGIYYLPGFEEPSAPGYTLITKADAGDTADSLNLFVTLKNPRGV 234 KE LVPKA+RTY VVGI PGFEE SAPGYTLITKAD D A+S ++FVTLKNPRGV Sbjct: 181 DDKEVLVPKAERTYTVVGICERPGFEEHSAPGYTLITKADTADQAESFSIFVTLKNPRGV 240 Query: 235 HAYASSTAGTGAYVFNDNVLRFMGLSGDNIFNTLLYSVGGILVALIMIGSIFLIYNSFNI 294 AYASSTAG AY+FND VLRFMG S + +FN LLY+VGGILVA+IM+GSIFLIYNSFNI Sbjct: 241 QAYASSTAGARAYIFNDYVLRFMGASDNKLFNALLYAVGGILVAIIMVGSIFLIYNSFNI 300 Query: 295 SLNERTHQFGILSSVGATARQLRNSVLFEGLCXXXXXXXXXXXXXXXSIRLVISVVARNF 354 SLNERT QFGILSSVGATA QLRNSVLFEGLC SI VI +VARNF Sbjct: 301 SLNERTRQFGILSSVGATAGQLRNSVLFEGLCIGAIGIPIGVMVGIGSIGFVIPIVARNF 360 Query: 355 ENILYTNVPLTLXXXXXXXXXXXXXXXXXXXXXXYIPARKAASTPVMEIIRQTNEVKVES 414 NILY+ VPLTL YIPARKAA+TPVME IRQTNEVK ES Sbjct: 361 GNILYSTVPLTLSVSVHAIVAAVAVSLVTILISAYIPARKAANTPVMESIRQTNEVKTES 420 Query: 415 KAVKTSKLAQRIYGLEGTLALKNFKRNKKRYRXXXXXXXXXXXXXXXTSAFVTDLKQWSE 474 K VKTSKL QRIYGLEG LALKNFKRNKKRYR SAF T LK+ SE Sbjct: 421 KVVKTSKLVQRIYGLEGALALKNFKRNKKRYRSIVLSLVLSVVLFVSGSAFGTTLKRLSE 480 Query: 475 RAVVYTTFDIIMSTQDMNDSEMLPLYDKLKTADGVYESSYQALMKYSCVAKASDLSDDYW 534 R ++ +DI ++TQD++DSEM PLYDKLKTADGVYESSYQA+ YSC KASD SD Y Sbjct: 481 RLIMDFDYDIFLTTQDIDDSEMFPLYDKLKTADGVYESSYQAVFAYSCAVKASDFSDRYR 540 Query: 535 KYAGSHSPDETVNLPMEIQFLDDSAYLNIIKSLNLPEEEYTGQNAKMIAVAKMKNHMKDN 594 +Y G +PD+TV LPM+IQF++DS YL IK L+LP EEYTGQ AKMIAVAK + KD Sbjct: 541 EYVGYSAPDQTVYLPMDIQFIEDSEYLRFIKELSLPAEEYTGQGAKMIAVAKKRVDKKDG 600 Query: 595 REEEVANISDLFKSSSMNFTIAPETNGKPKMEQERNVSIKFVNTVPPDGPSIPEDSKVKN 654 E + D+F S S F++APETN KP MEQ ++++I FV+T P D P P S + Sbjct: 601 PSE----LFDMFASRSTTFSVAPETNDKPMMEQGQSINITFVDTYPVDPP--PRQSSKQR 654 Query: 655 PFIFKVMVPYSIKEKFETSDTHVAIKALTFRSKTPIQSTAKMEAMIKGAGIKSNYTLYNF 714 ++F V+ PYS+KEKFET DTH A L F SK P QS A MEAMI+ AGI S YTLYN Sbjct: 655 SYVFMVVAPYSLKEKFETPDTH-ADMGLAFLSKNPSQSVADMEAMIQDAGIMSAYTLYNV 713 Query: 715 SKVLDENRNMIFIANVFAYTFIIMISLITVANVFNTISTNIKLRRRELAMLRSVGMSERD 774 ++++ R++ F+ +VF Y F+IMISLI VANVFNTISTNI+LRRRELAMLRSVGMS+RD Sbjct: 714 YAIVEQYRSLTFVIDVFTYVFVIMISLIAVANVFNTISTNIRLRRRELAMLRSVGMSDRD 773 Query: 775 FQKMMNFECAFYGMRALIFGLPIAAISAWLIYK--VMGGGADNIAFVFPWXXXXXXXXXX 832 F KMMNFEC FYGMR L+FGLPIAAI +WLIYK V DN FVFPW Sbjct: 774 FNKMMNFECVFYGMRTLLFGLPIAAIISWLIYKGLVAVERMDNFDFVFPWGSMIISVFSV 833 Query: 833 XXXXXXTMLYAISKIKRENIIDALRDDMT 861 TMLYAISKIK+ENIIDALRDDMT Sbjct: 834 LFIVFITMLYAISKIKKENIIDALRDDMT 862 >ref|NP_347166.1| Predicted permease, domain duplication [Clostridium acetobutylicum] pir||G96964 probable permease, domain duplication [imported] - Clostridium acetobutylicum gb|AAK78506.1| Predicted permease, domain duplication [Clostridium acetobutylicum] Length = 863 Score = 1014 bits (2623), Expect = 0.0, Method: Compositional matrix adjust. Identities = 528/869 (60%), Positives = 616/869 (70%), Gaps = 16/869 (1%) Query: 1 MNIFNKVTLQSMKKSRTRTIVTIIGVVLSAAMITGVATFGVSLLNYMANGAAQKYGGWHV 60 MN+FNKV LQ MKKSRTRTIVT+IGV+LS +ITGV TFG+SL+NY+A G AQKYGGWHV Sbjct: 1 MNVFNKVALQGMKKSRTRTIVTVIGVILSVTLITGVTTFGISLMNYLAKGEAQKYGGWHV 60 Query: 61 EFVNVDSSFTQERALDKGVANSATVENIGYAKLDGGKNPKKPYLFMAGFSKKAFDTLP-I 119 +F NV+SSF ++A + VA+ AT +NIGYAKL G K KPYLF+AG+SKK F+ LP I Sbjct: 61 KFENVNSSFASKQASNDKVASVATFKNIGYAKLKGVKTTNKPYLFIAGYSKKNFNALPPI 120 Query: 120 NLMSGRLPENSGEILVPMSAEVNSGVNFAEGDTLSLAVGNRMNGNKNLGQHDPYISGKET 179 ++ GR+P+NS EI+VP GV GD ++ VG+RM NK+LGQHDPYISGKET Sbjct: 121 LMVMGRMPQNSREIVVPGKVMTKGGVKVQLGDKFTIDVGSRMKVNKSLGQHDPYISGKET 180 Query: 180 LVPKAKRTYNVVGIYYLPGFEEPSAPGYTLITKADAGDTADSLNLFVTLKNPRGVHAYAS 239 LVPK KRTY VVGI +P F+E SAPGYT IT ADA DT D L+LFVTLKNPR VH YA Sbjct: 181 LVPKVKRTYTVVGISQMPTFDEDSAPGYTAITTADAADTMDDLSLFVTLKNPREVHTYAK 240 Query: 240 STAGTGAYVFNDNVLRFMGLS---GDNIFNTLLYSVGGILVALIMIGSIFLIYNSFNISL 296 STA AY N+ VLRFM LS GD +FN LYSVGGI+V +IMIGSIFLIYNSFNISL Sbjct: 241 STAEGHAYTLNNEVLRFMALSNDPGDKVFNAFLYSVGGIVVVIIMIGSIFLIYNSFNISL 300 Query: 297 NERTHQFGILSSVGATARQLRNSVLFEGLCXXXXXXXXXXXXXXXSIRLVISVVARNFEN 356 NERTHQFGILSSVGATA+QLR SVLFEG+C S +LV+ VVA+ F N Sbjct: 301 NERTHQFGILSSVGATAKQLRRSVLFEGICIGAIGIPIGVLVGIASTKLVMVVVAKQFSN 360 Query: 357 ILYTNVPLTLXXXXXXXXXXXXXXXXXXXXXXYIPARKAASTPVMEIIRQTNEVKVESKA 416 I + VP T+ IPARKAA+ PVME IRQTNEVK+E+K Sbjct: 361 IFFVGVPFTVMVSVPAILAAVVISMITILISADIPARKAANMPVMECIRQTNEVKLEAKE 420 Query: 417 VKTSKLAQRIYGLEGTLALKNFKRNKKRYRXXXXXXXXXXXXXXXTSAFVTDLKQWSERA 476 VKTSKLAQRIYG EG LALKNFKRNKKRYR TSA V DLKQ + A Sbjct: 421 VKTSKLAQRIYGFEGVLALKNFKRNKKRYRSIVLSLVLSVVLFISTSAMVADLKQTTAGA 480 Query: 477 VVYTTFDIIMSTQDMNDSEMLPLYDKLKTADGVYESSYQALMKYSCVAKASDLSDDYWKY 536 +DI + DM DSEML LY+KLKT +GVYESSYQ +M YSC K SD SD Y K Sbjct: 481 KEINGYDIGFGSDDMKDSEMLQLYNKLKTTNGVYESSYQVVMNYSCAVKGSDFSDAYKKS 540 Query: 537 AGSHSPDETVNLPMEIQFLDDSAYLNIIKSLNLPEEEYTGQNAKMIAVAKMKNHMKDNRE 596 SHS D+TVNL IQFLDDS YLNI+K L LP++EY G NAK+I+VAK+ + DN + Sbjct: 541 VSSHSLDKTVNLSTIIQFLDDSTYLNIVKRLGLPKKEYIGPNAKLISVAKVDSD-HDN-Q 598 Query: 597 EEVANISDLFKSSSMNFTIAPETNGKPKMEQERNVSIKFVNT-VPPDGPSIPEDSKV--K 653 + V + D+FKSSSMNFTIAPE NGKP++ Q RNVSI FV+T V PD IP +V K Sbjct: 599 KNVHQLPDMFKSSSMNFTIAPEINGKPEIRQGRNVSITFVSTMVMPD---IPPSVRVSLK 655 Query: 654 NPFIFKVMVPYSIKEKFETSDTHVAI--KALTFRSKTPIQSTAKMEAMIKGAGIKSNYTL 711 P ++ PYS+KEKF TS+ I K +TF SK P QS AKME IKGA IK YTL Sbjct: 656 KPSKLSLIAPYSLKEKFNTSNISADINAKGMTFLSKNPSQSAAKMEEAIKGAKIKDIYTL 715 Query: 712 YNFSKVLDENRNMIFIANVFAYTFIIMISLITVANVFNTISTNIKLRRRELAMLRSVGMS 771 N K+ +EN+N IFI +VF+YTFIIMISLI VANVFNTISTNIKLRRRELAMLRSVGMS Sbjct: 716 INSKKIFEENKNEIFIVDVFSYTFIIMISLIAVANVFNTISTNIKLRRRELAMLRSVGMS 775 Query: 772 ERDFQKMMNFECAFYGMRALIFGLPIAAISAWLIYKVMGGGADNIAFVFPWXXXXXXXXX 831 +RDF+KMMNFEC FYGM+AL+ GLP++ I +WL++KVM G D+ FV PW Sbjct: 776 DRDFKKMMNFECVFYGMKALLLGLPLSIIFSWLVHKVMSG--DSTHFVLPWSSIGISVFG 833 Query: 832 XXXXXXXTMLYAISKIKRENIIDALRDDM 860 TM+Y+ISKIK+ENIIDALRDDM Sbjct: 834 VLFIVFITMMYSISKIKKENIIDALRDDM 862 >ref|ZP_00060009.1| COG0577: ABC-type antimicrobial peptide transport system, permease component [Clostridium thermocellum ATCC 27405] Length = 779 Score = 323 bits (829), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 206/624 (33%), Positives = 318/624 (50%), Gaps = 20/624 (3%) Query: 1 MNIFNKVTLQSMKKSRTRTIVTIIGVVLSAAMITGVATFGVSLLNYMANGAAQKYGGWHV 60 MN+F K+TL+ ++K++ RT+VTIIG++LSA+MIT V F SL +++ + + G W+ Sbjct: 1 MNVFYKLTLKILEKNKARTLVTIIGIILSASMITAVTCFISSLQDFLVDMVVAREGDWYG 60 Query: 61 EFVNVDSSFTQERALDKGVANSATVENIGYAKLDGGKNPKKPYLFMAGFSKKAFDTLPIN 120 +V + DK V + + IGYA L+G +N KPYLF+ + D++PI+ Sbjct: 61 VVYDVKKEQIESLKKDKEVKSVVWLRKIGYAWLEGSQNEYKPYLFIGAMGEGFKDSMPIH 120 Query: 121 LMSGRLPENSGEILVPMSAEVNSGVNFAEGDTLSLAVGNRMNGNKNLGQHDPYISGK--- 177 L GR+PE++ EI++P E N GV F GD LSL +G+R++ L Q++ Y+ K Sbjct: 121 LTEGRMPESNSEIILPKHVETNGGVKFKIGDILSLEIGDRISDGFKLNQNNSYLHEKDGG 180 Query: 178 --ETLVPKAKRTYNVVGIYYLPGFEEPSAPGYTLITKADAGD-TADSLNLFVTLKNPRGV 234 E LV + +RT+ VVG Y PGFE APGYT +T D ++ ++++ K G+ Sbjct: 181 ETEELVVRERRTFTVVGFYERPGFEPFIAPGYTALTVEDNNAFSSYDYDVYIKTKKMSGI 240 Query: 235 HAYASSTAGTGAYVFNDNVLRFMGLSGDNIFNTLLYSVGGILVALIMIGSIFLIYNSFNI 294 + ND++LRF G+ D F +LY + GIL+ALIM GSI LIYN+F+I Sbjct: 241 IDFMDEKFQGHGRRINDDLLRFSGVIYDPTFKGILYGLAGILIALIMFGSILLIYNAFSI 300 Query: 295 SLNERTHQFGILSSVGATARQLRNSVLFEGLCXXXXXXXXXXXXXXXSIRLVISVVARNF 354 S+NERT QFGIL+S+GAT RQ+ SVLFE I + + + F Sbjct: 301 SVNERTKQFGILASIGATRRQMLKSVLFEACFLSLIGIPFGILAGVLGIGVTLKLTEDLF 360 Query: 355 ENILYTN--VPLTLXXXXXXXXXXXXXXXXXXXXXXYIPARKAASTPVMEIIRQTNEVKV 412 + L + V L L YIPA++A ++ IRQT ++K+ Sbjct: 361 VSFLQVDNGVVLDLHVSLGAVVVAIVVGFATVLISAYIPAKRALRISPIDAIRQTQDIKI 420 Query: 413 ESKAVKTSKLAQRIYGLEGTLALKNFKRNKKRYRXXXXXXXXXXXXXXXTSAFVTDLKQW 472 E+K VKTSKL +++G EG +A KNFKRN+++YR +S+F + + Sbjct: 421 EAKKVKTSKLVYKLFGFEGMIASKNFKRNRRKYRTTVVSLFMSVVLFISSSSFCAYITKS 480 Query: 473 SERAVVYTTFDIIMS-TQDMNDSEML-PLYDKLKTADGVYESSYQALMKYSCVAKASD-- 528 + V +DI + T D+ + LY +L +GV +SSY + AK Sbjct: 481 ANSVVRRLDYDISYTFTSDLKEKYSFDELYGELSQINGVADSSYGYFYRDFEYAKIPTGL 540 Query: 529 LSDDYWKYAGSHSPDETVNLPME-------IQFLDDSAYLNIIKSLNLPEEEYTGQNA-K 580 L+ +Y + + + +E + F+DD Y +K +L N Sbjct: 541 LNKEYISHLEKRYGENYMETDLEYYLVNIRVYFVDDVTYEKYLKENSLASNTNRNSNVPH 600 Query: 581 MIAVAKMKNHMKDNREEEVANISD 604 + V MK + ++ N+ D Sbjct: 601 AVVVDSMKFYDAQQKKHYTLNLLD 624 >ref|NP_691281.1| hypothetical protein OB0360 [Oceanobacillus iheyensis HTE831] dbj|BAC12316.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 868 Score = 197 bits (502), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 145/463 (31%), Positives = 232/463 (50%), Gaps = 22/463 (4%) Query: 1 MNIFNKVTLQSMKKSRTRTIVTIIGVVLSAAMITGVATFGVSLLNYMANGAAQKYGGWHV 60 MNI NKVT++ +K+++ RT+VTI+GV++S AMIT VAT G S L+ + G WH Sbjct: 1 MNIVNKVTIRHLKENKRRTLVTILGVIISVAMITAVATLGQSFLDLNQRQTIENTGEWHY 60 Query: 61 EFVNVDSSFTQERALDKGVANSATVENIGYAKLDGGKNPKKPYLFMAGFSKKAFDTLPIN 120 + N++ Q + + +GY+ LDG KPY+++ +K D + Sbjct: 61 SYTNLNEQQYQAVKEHDKTESIGLMNELGYSPLDG--EGSKPYVYVHQLNKAGMDQFQVK 118 Query: 121 LMSGRLPENSGEILVPMSAEVNSGVNFAEGDTLSLAVGNRMNGNKNLGQHDPY---ISGK 177 L GRLPEN E+++ + + SG + GDT++L VG R + + + P +S + Sbjct: 119 LQDGRLPENPDEVVLSETL-LQSGYDKEIGDTITLEVGERYSLSDEMEGEGPLNQTVSAE 177 Query: 178 -------ETLVPKAKRTYNVVGIYYLPGFEEPSAPGYTLITKADAGDTADSLNLFVTLKN 230 E L + T+ +VG P ++ APGY++++ D + N+ V +K+ Sbjct: 178 RTEDGLAEELRNTEEHTFTIVGTIEEPLWDYSWAPGYSMLSYIDEDILSTEENVTVYVKS 237 Query: 231 P-------RGVHAYASSTAGTGAYV-FNDNVLRFMGLSGDNIFNTLLYSVGGILVALIMI 282 + ++A + FN N+L +S + ++ + I+V +IMI Sbjct: 238 NDISTSLFDDIPSFAKKQNIDQEQIEFNYNLLEAYIVSPNQGALATIFGLITIIVVIIMI 297 Query: 283 GSIFLIYNSFNISLNERTHQFGILSSVGATARQLRNSVLFEGLCXXXXXXXXXXXXXXXS 342 GSI LIYN+F IS++ER+ G+LSS+GAT RQ RNSV FEG+ Sbjct: 298 GSIALIYNAFAISVSERSRYLGMLSSIGATKRQKRNSVFFEGIIIALISIPLGVGAGLLG 357 Query: 343 IRLVISVVARNFENILYTNVPLTLXXXXXXXXXXXXXXXXXXXXXXYIPARKAASTPVME 402 I + + V + + +V L L YIPA +A+ ++ Sbjct: 358 IGITLYFVNQILSQAQF-DVDLQLVASFESIGIAVVISFITIMISAYIPAVRASKVTAID 416 Query: 403 IIRQTNEVKVESKAVKTSKLAQRIYGLEGTLALKNFKRNKKRY 445 IRQ+ ++K+ K VK + L ++I+G E +ALKN KRNKKRY Sbjct: 417 AIRQSKDIKLTKKKVKANPLVRKIFGYEAEIALKNLKRNKKRY 459 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 57/140 (40%), Positives = 90/140 (64%), Gaps = 1/140 (0%) Query: 720 ENRNMIFIANVFAYTFIIMISLITVANVFNTISTNIKLRRRELAMLRSVGMSERDFQKMM 779 ++R M + ++F Y FI +I+LI+VAN+FNTIST++ LRRRE A ++S+GM+ + F+KM+ Sbjct: 728 QDRQMTLVLSIFVYGFITLITLISVANIFNTISTSVALRRREFATMKSIGMTPKAFRKMI 787 Query: 780 NFECAFYGMRALIFGLPIAAISAWLIYKVMGGGADNIAFVFPWXXXXXXXXXXXXXXXXT 839 FE FYG+++L++GLP++ ++IY + +F PW Sbjct: 788 QFESVFYGLKSLLYGLPLSIGVMYVIYN-QSQNTFSYSFSLPWINISIAILAVFVIVSVA 846 Query: 840 MLYAISKIKRENIIDALRDD 859 MLY+ISKIK +NII+ LR + Sbjct: 847 MLYSISKIKDDNIIETLRQE 866 >ref|NP_782039.1| putative permease [Clostridium tetani E88] gb|AAO35976.1| putative permease [Clostridium tetani E88] Length = 875 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 134/475 (28%), Positives = 211/475 (44%), Gaps = 41/475 (8%) Query: 1 MNIFNKVTLQSMKKSRTRTIVTIIGVVLSAAMITGVATFGVSLLNYMANGAAQKYGGWHV 60 M + +T + +K+ + RTI+TI+G+VLS A++T + T VS+ + + G +H Sbjct: 1 MKKYGHLTYRYLKEQKKRTILTILGIVLSVALVTAIGTMLVSIKTKFISDCIKDKGHYHG 60 Query: 61 EFVNVDSSFTQERALDKGVAN--------SATVENIGYAKLDGGKNPKKP---YLFMAGF 109 EFV ++ + + V N +A + NI + D NP P YL + + Sbjct: 61 EFVGINKKDVNKINNNVDVDNISVTSNDTTAIISNISKEERDA--NPSAPLHRYLNIKAY 118 Query: 110 SKKAFDTLPINLMSGRLPENSGEILVPMSAEVNSGVNFAEGDTLSLAVGNRMNGNKNLGQ 169 A +PIN+ GRLP+ EI++ GD + L +G R+ K G Sbjct: 119 GSSALSMIPINVKEGRLPQKENEIVLEYWVPDYLSGKPKIGDKIKLDIGKRIVKEK--GS 176 Query: 170 HDPYISGKETLVPKAKRTYNVVGIYYLPGFEEPSAPGYTLITKADAGDTADS--LNLFVT 227 D KET KR Y +VG+ P F P IT D A N++V Sbjct: 177 KDGEGETKETFNKTGKREYTIVGVT-APKFSWPGVYITQGITFLDENKLASDKKYNVYVK 235 Query: 228 LKNPRGVHAYASSTA----------GTGAY----VFNDNVLRFMGLSGDNIFNTLLYSVG 273 L + + V+ + A G Y +N+ +LR S D N L ++ Sbjct: 236 LNSAKDVYKKCENIAKNLGMEKEKTSKGIYGYNIEYNEQLLRLYAQSLDKSINEGLTALV 295 Query: 274 GILVALIMIGSIFLIYNSFNISLNERTHQFGILSSVGATARQLRNSVLFEGLCXXXXXXX 333 +V LI+I +I +IYN FNIS+ ER QFGIL GA Q++ VL E L Sbjct: 296 AFIVGLIIISTIAVIYNIFNISVLERVSQFGILRCTGAAPNQIKKLVLKEALILSFIGIP 355 Query: 334 XXXXXXXXSIRLVISVVARNFENILYTNV-PLTLXXXXXXXXXXXXXXXXXXXXXXYIPA 392 ++++VISVV ++ + + P+ PA Sbjct: 356 LGLANGVLAMKIVISVVKVLLKDEIKVVISPVVFIISAIIGLITIYLSAIG-------PA 408 Query: 393 RKAASTPVMEIIRQTNEV-KVESKAVKTSKLAQRIYGLEGTLALKNFKRNKKRYR 446 RKA+ +E +R T + K + K K ++ +++G+EG +A KN KRN+K++R Sbjct: 409 RKASKVSPLEAVRNTGSLKKEKFKKRKRFRIINKVFGIEGEIAYKNLKRNRKKFR 463 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 1/149 (0%) Query: 709 YTLYNFSKVLDENRNMIFIANVFAYTFIIMISLITVANVFNTISTNIKLRRRELAMLRSV 768 Y ++F + NR+ N+F Y F+ +I+LI N+ NTISTN+ LR+RELAM+R+V Sbjct: 725 YQYFDFQEDSKRNRDKAIAINIFLYGFVGVITLIGCLNIVNTISTNLILRKRELAMIRAV 784 Query: 769 GMSERDFQKMMNFECAFYGMRALIFGLPIAAISAWLIYKVMGGGADNIAFVFPWXXXXXX 828 GM KM+ E +YG+ A I+G I ++ ++K+M D +VFP Sbjct: 785 GMDRGKMSKMICIEGIYYGIIASIYGGIIGTALSYELFKIMTNFRD-FQWVFPIKEILIA 843 Query: 829 XXXXXXXXXXTMLYAISKIKRENIIDALR 857 + + KI +ENII+ +R Sbjct: 844 VIGAIIISLISTYIPLRKINKENIIENIR 872 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.133 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,102,991,721 Number of extensions: 44149996 Number of successful extensions: 118841 Number of sequences better than 1.0e-05: 12 Number of HSP's gapped: 118877 Number of HSP's successfully gapped: 17 Length of query: 861 Length of database: 757,237,578 Length adjustment: 134 Effective length of query: 727 Effective length of database: 393,414,312 Effective search space: 286012204824 Effective search space used: 286012204824 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)