BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0538.0018.p (330 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00094476.1| COG0702: Predicted nucleoside-diphosphate-sug... 172 1e-41 gb|EAA69560.1| hypothetical protein FG02038.1 [Gibberella zeae P... 135 9e-31 ref|NP_241171.1| BH0305~unknown conserved protein in others [Bac... 129 1e-28 ref|NP_103008.1| hypothetical protein mlr1414 [Mesorhizobium lot... 125 1e-27 ref|NP_386189.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium m... 114 4e-24 >ref|ZP_00094476.1| COG0702: Predicted nucleoside-diphosphate-sugar epimerases [Novosphingobium aromaticivorans] Length = 305 Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 100/301 (33%), Positives = 162/301 (53%), Gaps = 9/301 (2%) Query: 13 RYIVTGVDGQLASRVAETVLAEVDGRNLTFTCMKKDRIPKDTVQRWENAGVTIFEINYDD 72 R ++TG G V + ++A+ +L K +++ Q G T+ ++D Sbjct: 3 RIVITGASGNYGRGVTDRLIAQGRAEDLILITRKPEKLADRAAQ-----GCTVRYGDFDK 57 Query: 73 IPSMERAFKDGDRIYIVSGLEVGRRVQQHKNAIDTAIKAGISHITYSSFIGATDP-NYAH 131 ++ A + +R+ ++SG VG RV QHK AID A AG++H+ Y+SFIG DP N A Sbjct: 58 PETLAEAVQGAERMLLISGTRVGARVVQHKAAIDAAAAAGVAHLVYTSFIGIDDPANPAE 117 Query: 132 VFVTPDHTATENYLKSTGVTYNAMRNNLYLENYLTMYTMLALMSNNKWLTTAGEGRATLV 191 V DH TE +K++G + +R+ Y + + M +M + KW + AGEGR +V Sbjct: 118 V--RHDHIETEALMKASGCAWTMLRDAHYADAMILMAG-PGVMQSGKWFSNAGEGREAMV 174 Query: 192 HKDDCXXXXXXXLLGKGKDNEAYNIVGSESVSVRDLCNLIKEVSGRDLEYTPVNAEQYYE 251 +DDC L G+G + YNI G E + R++ ++ EV+GR +EY ++ E Y Sbjct: 175 WRDDCIESAVAVLTGEGHQGQVYNITGPELQTFREVAAMMAEVTGRPVEYVSLDDEGQYA 234 Query: 252 HLEKMHIPREITGDFSCSPVPFCGDDLVTTDASIKEGLLNVQSDAIEALTGQKPKTARDI 311 + M IPR D + +P+ DD+VT +I+EG L + +D +E LTG+K ++ R + Sbjct: 235 MFDAMGIPRRPVDDSEVNGIPWNSDDMVTFGRAIREGFLELCTDDVERLTGRKARSVRQM 294 Query: 312 I 312 I Sbjct: 295 I 295 >gb|EAA69560.1| hypothetical protein FG02038.1 [Gibberella zeae PH-1] Length = 305 Score = 135 bits (341), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 84/310 (27%), Positives = 148/310 (47%), Gaps = 19/310 (6%) Query: 13 RYIVTGVDGQLASRVAETVLAEVDGRN--LTFTCMKKDRIPKDTVQRWENAGVTIFEINY 70 +Y++TG DG L R+A + E+ + L FT K++ IP+D + W Sbjct: 3 KYVLTGADGNLG-RIAASFALEIARPDDELVFTSYKQEAIPEDLRKSW------------ 49 Query: 71 DDIPSMERAFKDGDRIYIVSGLEVGR-RVQQHKNAIDTAIKAGISHITYSSFIGA---TD 126 D S++ AF+ + + ++S G R +Q + +D A G+ + Y+SF+GA + Sbjct: 50 TDKESLKAAFQSAEAVSLISTWLFGEGRRRQAQTVLDAAKACGVKRVCYTSFVGAGIEAE 109 Query: 127 PNYAHVFVTPDHTATENYLKSTGVTYNAMRNNLYLENYLTMYTMLALMSNNKWLTTAGEG 186 F+ DH E + ++G+ +N RN LY +N T++ ++WL Sbjct: 110 NEEGIPFLPRDHHFIEKIIYASGLEWNIQRNYLYADNIPTLFAQSWKFCGDRWLVNTHGQ 169 Query: 187 RATLVHKDDCXXXXXXXLLGKGKDNEAYNIVGSESVSVRDLCNLIKEVSGRDLEYTPVNA 246 V ++DC LLG+G+ N Y I G E+V+ ++ + E +G E + Sbjct: 170 AGAYVAREDCGNVLAALLLGRGEPNTVYEISGPEAVTNEEVFKWMCEQTGYKGEIVDMPD 229 Query: 247 EQYYEHLEKMHIPREITGDFSCSPVPFCGDDLVTTDASIKEGLLNVQSDAIEALTGQKPK 306 E+ +P + GDFS P+ C DL+ + +G + +D++E LTG+KPK Sbjct: 230 EELKIWWLDHGLPTDFFGDFSKLPMKLCIGDLLCCGEMVAKGFMAKTTDSVEKLTGRKPK 289 Query: 307 TARDIIGKYK 316 ++ + +YK Sbjct: 290 LYKEALLQYK 299 >ref|NP_241171.1| BH0305~unknown conserved protein in others [Bacillus halodurans] pir||A83688 hypothetical protein BH0305 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04024.1| BH0305~unknown conserved protein in others [Bacillus halodurans] Length = 284 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 91/301 (30%), Positives = 143/301 (47%), Gaps = 24/301 (7%) Query: 12 MRYIVTGVDGQLASRVAETVLAEVDGRNLTFTCMKKDRIPKDTVQRWENAGVTIFEINYD 71 M+ +VTG GQL S V E +L V N+ + R PK + + GV + + ++ Sbjct: 1 MKLLVTGATGQLGSLVVEALLKTVPAENVAVSV----RDPKKA-EHLKAQGVDVRQGDFT 55 Query: 72 DIPSMERAFKDGDRIYIVSGLEVGRRVQQHKNAIDTAIKAGISHITYSSFIGATDPNYAH 131 S+ AF D+I I+S G RV QHK AI A + + I Y+S A D + Sbjct: 56 QPESLVSAFAGVDKILIISSAP-GDRVAQHKAAIQAAKENNVRFIAYTSIANAQDNPF-- 112 Query: 132 VFVTPDHTATENYLKSTGVTYNAMRNNLYLENYLTMYTMLALMSNNKWLTTAGEGRATLV 191 F+ DH TE + +G+ Y+ +RNN YLEN + T+ A+ S WLT+AG G+ Sbjct: 113 -FIAEDHRETEKAIVESGIPYSFLRNNWYLENEVG--TIQAVASGAPWLTSAGSGKVGWA 169 Query: 192 HKDDCXXXXXXXLLGKGKDNEAYNIVGSESVSVRDLCNLIKEVSGRDLEYTPVNAEQYYE 251 + D L G+G ++ Y + G ++ +L ++ + GRD+E V+ Y + Sbjct: 170 PRRDYADAAAAVLTGEGHEHTTYELSG-HPLTQEELAQVVSDALGRDVEVQQVDDATYEQ 228 Query: 252 HLEKMHIPREITGDFSCSPVPFCGDDLVTTDASIKEGLLNVQSDAIEALTGQKPKTARDI 311 + IP E+ +PF +V I+EG LNV S E + G+ +D Sbjct: 229 AMSGAGIPEEV--------LPF----IVGIQQGIREGYLNVVSGDFEKVLGRPLTPLKDA 276 Query: 312 I 312 + Sbjct: 277 V 277 >ref|NP_103008.1| hypothetical protein mlr1414 [Mesorhizobium loti MAFF303099] dbj|BAB48794.1| hypothetical protein [Mesorhizobium loti] Length = 297 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/315 (28%), Positives = 150/315 (47%), Gaps = 49/315 (15%) Query: 15 IVTGVDGQLASRVAETVLAEVDGRNLTFTCMKKDRIPKD----TVQRWENA------GVT 64 +VTG GQL GR + M ++P T + EN GV Sbjct: 6 LVTGAAGQL-------------GRGVIRYLMDTHKVPPAKIIATTRNPENVADLAARGVV 52 Query: 65 IFEINYDDIPSMERAFKDGDRIYIVSG----LEVGRRVQQHKNAIDTAIKAGISHITYSS 120 + +++D S+E AFK DR+ I+S L+ GRR++QH+ A+ A KAG+SH+ Y+S Sbjct: 53 VRAADFNDATSLENAFKGADRVLIISTSDLDLKTGRRLKQHEAAVAAAKKAGVSHLLYTS 112 Query: 121 FIGATDPN---YAHVFVTPDHTATENYLKSTGVTYNAMRNNLYLENYLTMYTMLALMSNN 177 PN + V DH TE +K++G+ Y RN Y EN + +++ Sbjct: 113 M-----PNPEPVSPVLFAGDHYGTEQAIKASGIAYTIFRNGWYQENLF--IALPHAIASG 165 Query: 178 KWLTTAGEGRATLVHKDDCXXXXXXXLLGKGKDNEAYNIVGSESVSVRDLCNLIKEVSGR 237 +W T+AG+GR +DD L D++ Y + G ++ + ++ L+ EV+G+ Sbjct: 166 QWYTSAGDGRIAHGSRDDMAAAIAAGLASGSTDSKTYTLTGPQAYTTAEIAALVSEVTGK 225 Query: 238 DLEYTPVNAEQYYEHLEKMHIPREITGDFSCSPVPFCGDDLVTTDASIKEGLLNVQSDAI 297 LE + E E ++ +P E +V+ DA+ + G + + +DA+ Sbjct: 226 PLEVIQLPDEALTEGVKAAGVPEEF------------ARVIVSFDANTRSGRIAMATDAV 273 Query: 298 EALTGQKPKTARDII 312 E L+G+KP+T + + Sbjct: 274 ETLSGRKPRTLKQFL 288 >ref|NP_386189.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti] emb|CAC46662.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti] Length = 295 Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 85/299 (28%), Positives = 148/299 (49%), Gaps = 23/299 (7%) Query: 10 LNMRYIVTGVDGQLASRVAETVLAEVDGRNLTFTCMKKDRIPKDTVQRWENAGVTIFEIN 69 ++ R +VTG GQ V + +LA + +D I K + + GV + Sbjct: 1 MSGRLLVTGAAGQFGKLVLDALLASGKTKPADIIATSRD-IAK--LADYAAKGVETRAAD 57 Query: 70 YDDIPSMERAFKDGDRIYIVSG---LEVGRRVQQHKNAIDTAIKAGISHITYSSFIGATD 126 +DD S+ERAF DRI I+S E G+R++QH A++ A KA + HI Y+S Sbjct: 58 FDDPASLERAFAGADRILIISTDVLNEPGKRLKQHLAAVEAARKAAVKHILYTSM---PQ 114 Query: 127 PNYAHVFVTPDHTATENYLKSTGVTYNAMRNNLYLENYLTMYTMLALMSNNKWLTTAGEG 186 P + + DH TE +K+TG+ Y +RN Y+EN L ++ ++ +W ++AG+G Sbjct: 115 PEASVIPFASDHLGTEEAIKATGIPYTILRNAWYMENLL--LSLPHALAAGQWFSSAGDG 172 Query: 187 RATLVHKDDCXXXXXXXLLGKGKDNEAYNIVGSESVSVRDLCNLIKEVSGRDLEYTPVNA 246 R + + + D L ++ Y + G+++++ ++ L+ + +G+ LE V+ Sbjct: 173 RISHIGRRDLAAAAASALQSDSAESRTYTLTGTQALTTGEIAALVAKATGKKLEVVHVSD 232 Query: 247 EQYYEHLEKMHIPREITGDFSCSPVPFCGDDLVTTDASIKEGLLNVQSDAIEALTGQKP 305 E L+ +P DF VP LV+ DA+ ++G ++ +D LTG+ P Sbjct: 233 EALAGGLKNAGLP-----DFF---VPI----LVSFDANTRKGHFDIVTDDTAGLTGRHP 279 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 490,582,483 Number of extensions: 20098721 Number of successful extensions: 47796 Number of sequences better than 1.0e-05: 66 Number of HSP's gapped: 47703 Number of HSP's successfully gapped: 66 Length of query: 330 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 204 Effective length of database: 415,135,104 Effective search space: 84687561216 Effective search space used: 84687561216 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)