BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0538.0017.p (163 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_391320.1| ferulate decarboxylase [Bacillus subtilis] >gi|... 291 3e-78 emb|CAD37333.1| phenolic acid decarboxylase [Bacillus sp. BP-7] 287 5e-77 emb|CAA59273.1| ferulate decarboxylase [Bacillus pumilus] 271 3e-72 emb|CAC18719.1| phenolic acid decarboxylase (PAD) [Bacillus pumi... 267 5e-71 ref|NP_268087.1| phenolic acid decarboxylase [Lactococcus lactis... 258 2e-68 >ref|NP_391320.1| ferulate decarboxylase [Bacillus subtilis] sp|O07006|PADC_BACSU Phenolic acid decarboxylase (PAD) pir||D69671 ferulate decarboxylase padC - Bacillus subtilis emb|CAB08020.1| hypothetical protein [Bacillus subtilis] gb|AAC46254.1| phenolic acid decarboxylase [Bacillus subtilis] emb|CAB15445.1| phenolic acid decarboxylase [Bacillus subtilis subsp. subtilis str. 168] Length = 161 Score = 291 bits (745), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 133/151 (88%), Positives = 149/151 (98%) Query: 7 LKDFVGSHMIYTYEIGWEYEIYIKNDHTIDYRIHSGMVAGRWVRDQEVDIVKLTEGVYKV 66 +++F+GSHMIYTYE GWEYEIYIKNDHTIDYRIHSGMVAGRWVRDQEV+IVKLTEGVYKV Sbjct: 1 MENFIGSHMIYTYENGWEYEIYIKNDHTIDYRIHSGMVAGRWVRDQEVNIVKLTEGVYKV 60 Query: 67 SWTEPTGTDVALNFMPNEKRMHGVIFFPKWVHEHPEITVCYQNDYLELMKESREKYETYP 126 SWTEPTGTDV+LNFMPNEKRMHG+IFFPKWVHEHPEITVCYQND+++LMKESREKYETYP Sbjct: 61 SWTEPTGTDVSLNFMPNEKRMHGIIFFPKWVHEHPEITVCYQNDHIDLMKESREKYETYP 120 Query: 127 KYVVPEFADITFLENAGIDNQELISKAPYKG 157 KYVVPEFA+ITFL+N G+DN+E+ISKAPY+G Sbjct: 121 KYVVPEFAEITFLKNEGVDNEEVISKAPYEG 151 >emb|CAD37333.1| phenolic acid decarboxylase [Bacillus sp. BP-7] Length = 161 Score = 287 bits (735), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 132/151 (87%), Positives = 147/151 (97%) Query: 7 LKDFVGSHMIYTYEIGWEYEIYIKNDHTIDYRIHSGMVAGRWVRDQEVDIVKLTEGVYKV 66 +++F+GSHMIYTYE GWEYEIYIKNDHTIDYRIHS MVAGRWVRDQEV+IVKLTEGVYKV Sbjct: 1 MENFIGSHMIYTYENGWEYEIYIKNDHTIDYRIHSRMVAGRWVRDQEVNIVKLTEGVYKV 60 Query: 67 SWTEPTGTDVALNFMPNEKRMHGVIFFPKWVHEHPEITVCYQNDYLELMKESREKYETYP 126 SWTEPTGTDV+LNFMPNEKRMHG+IFFPKWVHEHPEITVCYQND+++LMKESREKYETYP Sbjct: 61 SWTEPTGTDVSLNFMPNEKRMHGIIFFPKWVHEHPEITVCYQNDHIDLMKESREKYETYP 120 Query: 127 KYVVPEFADITFLENAGIDNQELISKAPYKG 157 KYVVPEFA+ITFL+N G DN+E+ISKAPY+G Sbjct: 121 KYVVPEFAEITFLKNEGADNEEVISKAPYEG 151 >emb|CAA59273.1| ferulate decarboxylase [Bacillus pumilus] Length = 161 Score = 271 bits (694), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 124/151 (82%), Positives = 142/151 (94%) Query: 7 LKDFVGSHMIYTYEIGWEYEIYIKNDHTIDYRIHSGMVAGRWVRDQEVDIVKLTEGVYKV 66 + FVG HMIYTYE GWEYEIYIKNDHTIDYRIHSGMV GRWVRDQEV+IVKLT+GVYKV Sbjct: 1 MDQFVGLHMIYTYENGWEYEIYIKNDHTIDYRIHSGMVGGRWVRDQEVNIVKLTKGVYKV 60 Query: 67 SWTEPTGTDVALNFMPNEKRMHGVIFFPKWVHEHPEITVCYQNDYLELMKESREKYETYP 126 SWTEPTGTDV+LNFMP EKRMHGVIFFPKWVHE P+ITVCYQNDY++LMKESREKYETYP Sbjct: 61 SWTEPTGTDVSLNFMPEEKRMHGVIFFPKWVHERPDITVCYQNDYIDLMKESREKYETYP 120 Query: 127 KYVVPEFADITFLENAGIDNQELISKAPYKG 157 KYVVPEFADIT++ +AG++++ +I++APY+G Sbjct: 121 KYVVPEFADITYIHHAGVNDETIIAEAPYEG 151 >emb|CAC18719.1| phenolic acid decarboxylase (PAD) [Bacillus pumilus] Length = 161 Score = 267 bits (683), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 121/151 (80%), Positives = 141/151 (93%) Query: 7 LKDFVGSHMIYTYEIGWEYEIYIKNDHTIDYRIHSGMVAGRWVRDQEVDIVKLTEGVYKV 66 + F+G HMIYTYE GWEYEIYIKNDHTIDYRIHSGMV GRWVRDQEV+IVKLT+GVYK+ Sbjct: 1 MDQFIGLHMIYTYENGWEYEIYIKNDHTIDYRIHSGMVGGRWVRDQEVNIVKLTKGVYKI 60 Query: 67 SWTEPTGTDVALNFMPNEKRMHGVIFFPKWVHEHPEITVCYQNDYLELMKESREKYETYP 126 SWTEPTGTDV+LNFMP EKRMHGVIFFPKWVHE P+ITVCYQND ++LMKESREKYETYP Sbjct: 61 SWTEPTGTDVSLNFMPEEKRMHGVIFFPKWVHERPDITVCYQNDCIDLMKESREKYETYP 120 Query: 127 KYVVPEFADITFLENAGIDNQELISKAPYKG 157 KYVVPEFADIT++ +AG++++ +I++APY+G Sbjct: 121 KYVVPEFADITYIHHAGVNDETIIAEAPYEG 151 >ref|NP_268087.1| phenolic acid decarboxylase [Lactococcus lactis subsp. lactis] pir||B86866 phenolic acid decarboxylase [imported] - Lactococcus lactis subsp. lactis (strain IL1403) gb|AAK06028.1| phenolic acid decarboxylase [Lactococcus lactis subsp. lactis] Length = 177 Score = 258 bits (660), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 113/156 (72%), Positives = 141/156 (90%) Query: 1 MKTKEALKDFVGSHMIYTYEIGWEYEIYIKNDHTIDYRIHSGMVAGRWVRDQEVDIVKLT 60 MKT ++L+DFVG+H IYTY+ GWEYE+Y+KNDHTIDYRIH GMVAGRWV+DQEV +V LT Sbjct: 1 MKTFKSLEDFVGTHFIYTYDNGWEYELYVKNDHTIDYRIHGGMVAGRWVKDQEVSLVMLT 60 Query: 61 EGVYKVSWTEPTGTDVALNFMPNEKRMHGVIFFPKWVHEHPEITVCYQNDYLELMKESRE 120 EG+YK++WTEPTGTDVAL+F+PNE ++HG+IFFPKWV EHPEITVC+QND+++LM ESRE Sbjct: 61 EGIYKITWTEPTGTDVALDFLPNEGKLHGMIFFPKWVEEHPEITVCFQNDFIDLMHESRE 120 Query: 121 KYETYPKYVVPEFADITFLENAGIDNQELISKAPYK 156 KYETYPKY+VPEFA IT+ AG DN +++++APYK Sbjct: 121 KYETYPKYLVPEFAKITYAAEAGKDNDDVVAQAPYK 156 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 257,405,602 Number of extensions: 10857216 Number of successful extensions: 22969 Number of sequences better than 1.0e-05: 22 Number of HSP's gapped: 22967 Number of HSP's successfully gapped: 22 Length of query: 163 Length of database: 757,237,578 Length adjustment: 116 Effective length of query: 47 Effective length of database: 442,286,094 Effective search space: 20787446418 Effective search space used: 20787446418 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 121 (51.2 bits)