BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0538.0010.p (503 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_656446.1| hypothetical protein predicted by GeneMark [Bac... 175 2e-42 ref|NP_241581.1| BH0715~unknown conserved protein [Bacillus halo... 175 2e-42 ref|NP_978887.1| penicillin-binding protein, putative [Bacillus ... 170 8e-41 ref|NP_765562.1| beta-lactamase [Staphylococcus epidermidis ATCC... 166 1e-39 ref|NP_647182.1| ORFID:MW2365~hypothetical protein, similar to b... 144 4e-33 >ref|NP_656446.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_844942.1| penicillin-binding protein, putative [Bacillus anthracis str. Ames] gb|AAP26428.1| penicillin-binding protein, putative [Bacillus anthracis str. Ames] Length = 481 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 104/347 (29%), Positives = 183/347 (52%), Gaps = 13/347 (3%) Query: 47 IDDHVESMIEQLQIPGVALGIVKGDQIVYLKGYGTSGPDGDPITPQTPFILGSTTKSFTA 106 +D ++E I++ IPG A+ IV ++ + K G +G +T +TPF +GS +KS TA Sbjct: 37 LDKYIEKFIKEQNIPGAAVAIVHNKEVFFTKTMGVTGESEKKVTSKTPFAIGSISKSLTA 96 Query: 107 LAIMQLVEQGKIDLNAPMQQYLPNFKLADPKAAEAILVKDLLHQVSGFSTYEGRRVFNNK 166 LAI++L+E KI L P+Q+YLP FKL +P+ + I ++ LL SG +TYEG + + + Sbjct: 97 LAIVKLIEDKKIKLEDPVQRYLPWFKLKNPQISSTITIQHLLTHTSGINTYEGLALSDKQ 156 Query: 167 FDS---IDELATHLGDVSLSNPVGSTYHYSNLNYDLLGAIIQAASGQSYAEYVQEHIFNP 223 S + E L +V ++ P G Y YSN NY +LGA+I+ + ++Y+ Y++++IF P Sbjct: 157 SKSSTALKENVMKLSNVKVTAPPGEKYQYSNANYIVLGALIEEVTNETYSSYMEKYIFQP 216 Query: 224 LDMKNSFTSVAEAQQNGLAKGYQSIFGYMLPKDFPNNPSILASGYLISSAEDMAHYLTAQ 283 L+M + S A + G GYQS FG + + GY+ ++ EDM Y+ Sbjct: 217 LNMNGAAASKENAYEKGYLTGYQSWFGIPRKSVVSYDNTGAPYGYITANLEDMIQYIMF- 275 Query: 284 LNNGSYQNVSIVSPASVSTMHQPYAEDPSTGHYYGMGWEING-----NIIQHNGAIENFY 338 LN ++ ++ ++ P + S YG G +I H+G+ + Sbjct: 276 LNRP--EDAQLLKQENIHLYLSPLYKINSEKS-YGFGLRTTNINESETMIWHSGSTPDAR 332 Query: 339 SDMILDGDTAIV-VLINAQDFLVRGMNFSKIASGVQQIMNGQEPTGV 384 +++ ++ V++ ++ ++ S + G+ I+NG+EP + Sbjct: 333 AELFTLNESGWSGVILTNKNHVLEETALSVLKKGIISILNGEEPVDI 379 >ref|NP_241581.1| BH0715~unknown conserved protein [Bacillus halodurans] pir||C83739 hypothetical protein BH0715 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04434.1| BH0715~unknown conserved protein [Bacillus halodurans] Length = 478 Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 106/347 (30%), Positives = 189/347 (54%), Gaps = 13/347 (3%) Query: 47 IDDHVESMIEQLQIPGVALGIVKGDQIVYLKGYGTSGPDGDPITPQTPFILGSTTKSFTA 106 +D++VE+ + +IPG A+ IV+ + +Y K +G +G + +T +TPF++GS TKS TA Sbjct: 34 LDNYVETFLGTHRIPGAAIAIVQDRETIYAKSWGVTGGSEEAVTLETPFLIGSVTKSLTA 93 Query: 107 LAIMQLVEQGKIDLNAPMQQYLPNFKLADPKAAEAILVKDLLHQVSGFSTYEGRRVFNNK 166 LAI++L+++ KI L+ P+Q +LP F L D AA I ++ LL SG STY G + + Sbjct: 94 LAIVKLLDENKIMLDDPVQAHLPWFTLQDRAAATQITIRHLLAHTSGLSTYTGLAIADQG 153 Query: 167 FDSIDELATHLGDVS---LSNPVGSTYHYSNLNYDLLGAIIQAASGQSYAEYVQEHIFNP 223 + + +H+ +++ L+ G + YSN NY +LGA+++ SGQ ++EY+++ IF+ Sbjct: 154 SADENAIVSHVRNLATEELTADPGEQHQYSNANYLILGALVEEVSGQPFSEYMKQQIFSS 213 Query: 224 LDMKNSFTSVAEAQQNGLAKGYQSIFGYMLPKDFPNNPSILASGYLISSAEDMAHYLTAQ 283 L M+++ A +NG YQS FG+ + + GY+ +SAED+A ++ Sbjct: 214 LGMEHAAADHVTAARNGYLGSYQSWFGFPVKSRVSYDNGGTPYGYIAASAEDIASFIKFL 273 Query: 284 LNNGSYQNVSIVSPASVSTMHQPYAEDPSTGHYYGMGWEING-----NIIQHNGAIENFY 338 NG ++ S+S P + YYG G + +I H+GA + Sbjct: 274 QGNGPND---FLTEESLSFYLSPLVQQ-RENRYYGFGLRLTTFDSGETMIWHSGATPDSR 329 Query: 339 SDM-ILDGDTAIVVLINAQDFLVRGMNFSKIASGVQQIMNGQEPTGV 384 +++ IL V++ ++ + + + G+ QI++G++P V Sbjct: 330 AELFILPEHKWGGVILTNKNHRLEEEAVTHLREGIIQILHGEQPLQV 376 >ref|NP_978887.1| penicillin-binding protein, putative [Bacillus cereus ATCC 10987] gb|AAS41495.1| penicillin-binding protein, putative [Bacillus cereus ATCC 10987] Length = 483 Score = 170 bits (430), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 117/427 (27%), Positives = 209/427 (48%), Gaps = 19/427 (4%) Query: 47 IDDHVESMIEQLQIPGVALGIVKGDQIVYLKGYGTSGPDGDPITPQTPFILGSTTKSFTA 106 +D ++E I++ IPG ++ IV ++ + K G +G +T +TPF +GS +KS TA Sbjct: 37 LDKYIEKFIKEQNIPGASVAIVHNKEVFFTKTMGFTGESEKKVTSKTPFAIGSISKSLTA 96 Query: 107 LAIMQLVEQGKIDLNAPMQQYLPNFKLADPKAAEAILVKDLLHQVSGFSTYEGRRVFNNK 166 LAI++L+E KI L P+Q+YLP FKL D + + I ++ LL SG +TYEG + + + Sbjct: 97 LAIVKLIEDKKIKLEDPVQRYLPWFKLKDSQISSTITIQHLLTHTSGINTYEGLALSDKQ 156 Query: 167 FDS---IDELATHLGDVSLSNPVGSTYHYSNLNYDLLGAIIQAASGQSYAEYVQEHIFNP 223 S + E L +V ++ P G Y YSN NY +LGA+I+ + + Y+ Y++++IF P Sbjct: 157 SKSSTALKENVMRLSNVKVTAPPGEKYQYSNANYIVLGALIEEVTNEIYSSYMEKYIFQP 216 Query: 224 LDMKNSFTSVAEAQQNGLAKGYQSIFGYMLPKDFPNNPSILASGYLISSAEDMAHYLTAQ 283 L+M + S A + G GYQS FG + + GY+ ++ EDM ++ Sbjct: 217 LNMNGAAASKEIAYEKGYLTGYQSWFGIPRKSVVSYDNAGAPYGYITANLEDMIQFIMF- 275 Query: 284 LNNGSYQNVSIVSPASVSTMHQPYAEDPSTGHYYGMGWEING-----NIIQHNGAIENFY 338 LN +N + ++ P + S YG G +I H+G+ + Sbjct: 276 LNRQ--ENPQFLKQENMDLYLSPLYQTNSEKS-YGFGLRTTNINESETMIWHSGSTPDAR 332 Query: 339 SDMI-LDGDTAIVVLINAQDFLVRGMNFSKIASGVQQIMNGQEPTGVEITNVTRTYAIID 397 +++ L+ V++ ++ ++ S++ G+ I+NG+EP + N+ T Sbjct: 333 AEIFTLNKSGWSGVILTNKNHVLEETALSELKKGIISILNGEEPVDIP-KNIPLT----- 386 Query: 398 SICVIIAALVVWSIYNLFEWKKKFTPTPLRITVXXXXXXXXXXXXPVGVLISMGSMAPWY 457 I ++I L+++ I + K K T +++ L++ + +PW Sbjct: 387 QIIMLIVTLILFVISIMLIKKYKHMKTVKKVSWLSIGGLSLLLSITFIPLLTYSTSSPWR 446 Query: 458 VFFTYLP 464 + P Sbjct: 447 TIKIFAP 453 >ref|NP_765562.1| beta-lactamase [Staphylococcus epidermidis ATCC 12228] gb|AAO05648.1| beta-lactamase [Staphylococcus epidermidis ATCC 12228] Length = 505 Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 135/447 (30%), Positives = 218/447 (48%), Gaps = 50/447 (11%) Query: 47 IDDHVESMIEQLQIPGVALGIVKGDQIVYLKGYGTSGPDGD-PITPQTPFILGSTTKSFT 105 ID VE+ +++ IPG+A+ I+K ++I KGYG + + + P T F + S TK+FT Sbjct: 44 IDKMVETAMKKGDIPGLAILIIKDNKIFLNKGYGYANIEKKAKVNPHTQFEIASNTKAFT 103 Query: 106 ALAIMQLVEQGKIDLNAPMQQYLPNFKLADPKAAEAILVKDLLHQVSGFS---TYEGRRV 162 AI+QL ++GKI+LN + ++P FK+ I ++ LL Q SG T E R Sbjct: 104 GYAILQLAQEGKINLNDKVSTFIPGFKMKYEDKERDITIEQLLAQTSGIPGDITEENR-- 161 Query: 163 FNNKFDSIDELATHLGDVSLSNPVGSTYHYSNLNYDLLGAIIQAASGQSYAEYVQEHIFN 222 ++ ++DSI+ + L++ G T+ YSN+NYD+LG IIQ + QSY Y+Q+H+ Sbjct: 162 YSKQYDSIENIVNFAKGKRLNHVPGETFEYSNMNYDILGLIIQNVTHQSYTSYIQKHVLA 221 Query: 223 PLDMKNSFTSVAEAQQNGLAKGYQSIFGYMLPKDFPN-------NPSILASGYLISSAED 275 PL MK++ V + N A GY + +D N N + Y++SS D Sbjct: 222 PLKMKHTTFKVNNTKSNNEALGY-------IWEDNENKVAQPEFNIGDTPAAYMMSSTSD 274 Query: 276 MAHYLTAQLNNGSYQNVSIVSPA----SVSTMHQPYAEDPSTGHYYGMGWEINGN--IIQ 329 +A ++ Q++ S ++ + S S +P A+ YG GW IN + ++ Sbjct: 275 LAKWVQLQIHPTSKSQAKLIRQSHQVLSNSLNSEPNADS------YGSGWFINTDDHLVF 328 Query: 330 HNGAIENFYSDMILD--GDTAIVVLINAQDFLVRGMNFSKIASGVQ-QIMNGQEPTGV-E 385 H G ++NF S ++L+ IVVL N V +++A + QIMN + T + E Sbjct: 329 HTGVLDNFSSQILLNIRKSYGIVVLANTNSNQV-----TRLAEHLNTQIMNNRHYTTIEE 383 Query: 386 ITNVTRTYAII-----DSICVIIAALVVWSIYNLFE---WKKKFTPTPLRITVXXXXXXX 437 N T+ +I D VI + LV I L E + +K T + ++ Sbjct: 384 KVNQTKDMQLIISTLADIFMVIFSILVFSKILKLREGHIFIRKCLRTSIMFSIILLGFVA 443 Query: 438 XXXXXPVGVLISMGSMAPWYVFFTYLP 464 + LI +G A W ++LP Sbjct: 444 MNILFYLLPLIILGD-ATWGFVLSWLP 469 >ref|NP_647182.1| ORFID:MW2365~hypothetical protein, similar to beta-lactamase [Staphylococcus aureus subsp. aureus MW2] dbj|BAB96230.1| MW2365 [Staphylococcus aureus subsp. aureus MW2] Length = 498 Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 104/330 (31%), Positives = 172/330 (52%), Gaps = 40/330 (12%) Query: 46 KIDDHVESMIEQLQIPGVALGIVKGDQIVYLKGYGTSGPDGD-PITPQTPFILGSTTKSF 104 +ID +E +++ IPG ++ IVK ++ KGYG D +P T + + S TK+F Sbjct: 42 QIDTIIEHDLQKGHIPGASILIVKNGKVFLNKGYGYQDVDKKVKASPTTKYEIASNTKAF 101 Query: 105 TALAIMQLVEQGKIDLNAPMQQYLPNFKLADPKAAEAILVKDLLHQVSGF-STYEGRRVF 163 T LAI++L ++G+++LN + +++P+FK+ E I +K LL Q SG S Sbjct: 102 TGLAILKLAQEGRLNLNDAVSKHVPHFKMNYNGQNETITIKQLLAQTSGIPSDITSEDAV 161 Query: 164 NNKFDSIDELATHLGDVSLSNPVGSTYHYSNLNYDLLGAIIQAASGQSYAEYVQEHIFNP 223 NK + ++++ + L + G + YSN+NYDLLG IIQ + QSY +Y+ +H P Sbjct: 162 TNKNNRLNDVTRAIMGDELHHKPGEEFEYSNMNYDLLGLIIQNVTKQSYTQYITDHWLKP 221 Query: 224 LDMKNSFTSVAEAQQNGLAKGYQSIFGYMLPKDFP--NNPSI----LASGYLISSAEDMA 277 L MK++ +Q + +I GY L P + P S Y+++S ED+ Sbjct: 222 LQMKHT-----TFKQTNYKSKHDAI-GYELQGSTPVVSKPEFNLWDTPSAYMMTSTEDLE 275 Query: 278 HYLTAQLN---------NGSYQNVSIVSPASVSTMHQPYAEDPSTGHYYGMGWEINGN-- 326 H++ QLN S++N+S ST+ +P A +P Y GW N + Sbjct: 276 HWIKFQLNPPDKYKSLVQQSHKNLS-------STIGEPNA-NP-----YASGWFTNNDEH 322 Query: 327 IIQHNGAIENFYSDMILD--GDTAIVVLIN 354 ++ H+G ++NF S ++L+ + IVVL N Sbjct: 323 LVFHSGTLDNFSSFILLNPKQNYGIVVLAN 352 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 670,608,406 Number of extensions: 27421184 Number of successful extensions: 70721 Number of sequences better than 1.0e-05: 610 Number of HSP's gapped: 70224 Number of HSP's successfully gapped: 611 Length of query: 503 Length of database: 757,237,578 Length adjustment: 130 Effective length of query: 373 Effective length of database: 404,274,708 Effective search space: 150794466084 Effective search space used: 150794466084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)