BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0535.0020.p
         (55 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00097446.1| COG1132: ABC-type multidrug transport system,...    83   2e-15
ref|ZP_00098053.1| COG1132: ABC-type multidrug transport system,...    82   3e-15
ref|ZP_00036668.1| COG1132: ABC-type multidrug transport system,...    81   8e-15
ref|ZP_00184098.1| hypothetical protein Exigu038701 [Exiguobacte...    80   1e-14
ref|NP_735838.1| unknown [Streptococcus agalactiae NEM316] >gi|2...    79   4e-14

>ref|ZP_00097446.1| COG1132: ABC-type multidrug transport system, ATPase and permease
           components [Desulfitobacterium hafniense]
          Length = 292

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 47/55 (85%)

Query: 1   MLIVAQRIGTIKDADKIIVLEEGRIAGMGTHEELMDTCSVYQEIAYSQLSKEELA 55
           +L+VAQR+ TI +A++IIVL+ GRI G GTH EL+ TC VYQEIAYSQLS+EELA
Sbjct: 237 ILLVAQRVSTIMNAEQIIVLDNGRIVGKGTHNELLQTCEVYQEIAYSQLSEEELA 291


>ref|ZP_00098053.1| COG1132: ABC-type multidrug transport system, ATPase and permease
           components [Desulfitobacterium hafniense]
          Length = 586

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 48/54 (88%)

Query: 2   LIVAQRIGTIKDADKIIVLEEGRIAGMGTHEELMDTCSVYQEIAYSQLSKEELA 55
           LIVAQRIGTI DAD+IIVL+EG+I G GTH++L+  C+VY+EIA SQLS+EELA
Sbjct: 532 LIVAQRIGTIMDADQIIVLDEGKIVGKGTHKDLLRDCTVYREIAMSQLSEEELA 585


>ref|ZP_00036668.1| COG1132: ABC-type multidrug transport system, ATPase and permease
           components [Enterococcus faecium]
          Length = 317

 Score = 80.9 bits (198), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 45/55 (81%)

Query: 1   MLIVAQRIGTIKDADKIIVLEEGRIAGMGTHEELMDTCSVYQEIAYSQLSKEELA 55
           +LIVAQR+GTI  ADKIIVL EG + GMGTH EL++ C +Y +IA SQLSKEELA
Sbjct: 263 VLIVAQRVGTIMHADKIIVLNEGEVVGMGTHRELLEKCPIYYDIAASQLSKEELA 317


>ref|ZP_00184098.1| hypothetical protein Exigu038701 [Exiguobacterium sp. 255-15]
          Length = 328

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 48/55 (87%)

Query: 1   MLIVAQRIGTIKDADKIIVLEEGRIAGMGTHEELMDTCSVYQEIAYSQLSKEELA 55
           +LIVAQR+ T+ DAD+IIVLEEGR+AG+GTH+EL +T  VYQEI  SQLS+EE+A
Sbjct: 274 VLIVAQRVSTVMDADQIIVLEEGRVAGIGTHDELYETNEVYQEIVKSQLSEEEIA 328


>ref|NP_735838.1| unknown [Streptococcus agalactiae NEM316]
 emb|CAD47060.1| unknown [Streptococcus agalactiae NEM316]
          Length = 605

 Score = 79.0 bits (193), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/53 (69%), Positives = 44/53 (83%)

Query: 2   LIVAQRIGTIKDADKIIVLEEGRIAGMGTHEELMDTCSVYQEIAYSQLSKEEL 54
           LIVAQRI TI DAD I+VL++G++ G GTH+EL+    VYQEIAYSQLSKEEL
Sbjct: 549 LIVAQRISTIMDADLILVLDQGKVVGQGTHKELLSNNEVYQEIAYSQLSKEEL 601


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.317    0.133    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 69,543,625
Number of extensions: 1889315
Number of successful extensions: 11902
Number of sequences better than 1.0e-05: 138
Number of HSP's gapped: 11911
Number of HSP's successfully gapped: 138
Length of query: 55
Length of database: 757,237,578
Length adjustment: 27
Effective length of query: 28
Effective length of database: 683,929,905
Effective search space: 19150037340
Effective search space used: 19150037340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)