BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0534.0015.p (216 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00152562.1| hypothetical protein Daro078101 [Dechloromona... 101 1e-20 ref|NP_107225.1| transcriptional regulator [Mesorhizobium loti M... 99 4e-20 ref|NP_624078.1| Transcriptional regulator [Thermoanaerobacter t... 98 2e-19 ref|NP_746399.1| transcriptional regulator, GntR family [Pseudom... 97 2e-19 ref|NP_831478.1| Transcriptional regulator, GntR family [Bacillu... 95 1e-18 >ref|ZP_00152562.1| hypothetical protein Daro078101 [Dechloromonas aromatica RCB] Length = 221 Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 66/188 (35%), Positives = 98/188 (52%), Gaps = 2/188 (1%) Query: 10 LKQKIIDNELKPGQNVHEESLAALLGVSRTPLREAIQRLENEDFLVRQPNGRLKVAPITV 69 L+Q+I +EL PG + E+ LA G+SRTPLREA++ L +E + +P V I+ Sbjct: 17 LRQRIFAHELTPGTWIDEQKLAEQYGISRTPLREALKVLASEGLVELRPRRGCYVTEISR 76 Query: 70 EELEEIFLVRGMLEGHIAKNAAKNATPQDIQHMTAMVEKTNQSLYLGSDKDALPFGFEFH 129 ++L++IF + MLEG A A KNA P DI + + E+ + G EFH Sbjct: 77 QDLDDIFPLMAMLEGRCAAEAVKNAKPVDIAALKEIHERLESAARDGRIDAFFEANQEFH 136 Query: 130 DYLSEISGLHTFERILSQLRDHTLRYCRYVSLHGEWN-SQAYEEHSLILQRIVERDEEGA 188 + E+SG ++ LR L+ R SL E Q+ +EH LI+ + D A Sbjct: 137 KKIQELSGNRWLLSVIQDLRK-VLKLSRLHSLSLEGRLQQSLDEHRLIMAALSSSDASRA 195 Query: 189 EKVMQDHI 196 EK+M DH+ Sbjct: 196 EKLMHDHL 203 >ref|NP_107225.1| transcriptional regulator [Mesorhizobium loti MAFF303099] dbj|BAB53011.1| transcriptional regulator [Mesorhizobium loti] Length = 224 Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 106/204 (51%), Gaps = 2/204 (0%) Query: 3 KDNTYFELKQKIIDNELKPGQNVHEESLAALLGVSRTPLREAIQRLENEDFLVRQPNGRL 62 +D Y +++ I+ +LKPG+ ++E ++A LGVSRTP+REA++R+ +E + Sbjct: 15 RDQIYHKIRNLIVVGQLKPGEVINEVAIAEALGVSRTPVREAVKRISDEGLVKILAQTGT 74 Query: 63 KVAPITVEELEEIFLVRGMLEGHIAKNAAKNATPQDIQHMTAMVEKTNQSLYLGSDKDAL 122 VAPI+ +LEE +++R LE A+ AA TP + + + ++ G A+ Sbjct: 75 YVAPISRADLEEAYVIRRALEMESARRAAAKLTPASAELLEDNMAAHKLAISRGRYATAI 134 Query: 123 PFGFEFHDYLSEISGLHTFERILSQLRDHTLRYCRYVSLHGE-WNSQAYEEHSLILQRIV 181 FH ++EI GL R + + + RY+++ + Q E+H IL + Sbjct: 135 QLDDVFHRTIAEICGLPMIWRAVD-ISKAQMDRGRYLAIPKPGYGEQTIEQHEAILDALK 193 Query: 182 ERDEEGAEKVMQDHISNSLSTALK 205 D EGA + M++H+ SL L+ Sbjct: 194 RHDAEGAAQAMENHLETSLRNTLE 217 >ref|NP_624078.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] gb|AAM25682.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] Length = 225 Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 107/197 (54%), Gaps = 2/197 (1%) Query: 3 KDNTYFELKQKIIDNELKPGQNVHEESLAALLGVSRTPLREAIQRLENEDFLVRQPNGRL 62 +D + +K+ II +LKPG+ + E LA LGVSRTP+REAI++LE E +V P Sbjct: 14 RDLVFDYMKEAIITGKLKPGERLMEVQLAEKLGVSRTPVREAIRKLELEGLVVMVPRKGA 73 Query: 63 KVAPITVEELEEIFLVRGMLEGHIAKNAAKNATPQDIQHMTAMVEKTNQSLYLGSDKDAL 122 VA + ++L + VR LEG A AA+ T ++++ + +VE+ + G + + Sbjct: 74 YVADLNAKDLLNVLEVRSSLEGLAASLAAERITDEEVEKLKKIVEEFRIKMEEGDLEALI 133 Query: 123 PFGFEFHDYLSEISGLHTFERILSQLRDHTLRY-CRYVSLHGEWNSQAYEEHSLILQRIV 181 EFHD + S +I++ L++H R+ +Y++ + + Y+EH I + I Sbjct: 134 RLDKEFHDLIFAASRNDKLIQIMNNLQEHVHRFRVKYIT-EEKKAKRIYQEHKKIAELIE 192 Query: 182 ERDEEGAEKVMQDHISN 198 +RD GA K + H+ N Sbjct: 193 QRDANGARKWAEKHVHN 209 >ref|NP_746399.1| transcriptional regulator, GntR family [Pseudomonas putida KT2440] gb|AAN69863.1| transcriptional regulator, GntR family [Pseudomonas putida KT2440] Length = 251 Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 106/204 (51%), Gaps = 10/204 (4%) Query: 4 DNTYFELKQKIIDNELKPGQNVHEESLAALLGVSRTPLREAIQRLENEDFLVRQPNGRLK 63 D Y + + I++ L PG + EE+L + GVSRT +R A+ RL +E ++ +PN Sbjct: 25 DIVYAHIFEAILEQRLAPGTKLSEEALGEIFGVSRTIIRRALSRLAHESVVLLRPNRGAV 84 Query: 64 VAPITVEELEEIFLVRGMLEGHIAKNAAKNATPQDIQHMTAMVEKTNQSLYLGSDKDALP 123 VA TVEE ++F R M+E I + A ++ATP+ + + MV + S G + Sbjct: 85 VASPTVEEARQVFFSRRMVERAITELAVQHATPEQLNELRQMVREERDSFSCGDRGAGIR 144 Query: 124 FGFEFHDYLSEISG---LHTFERILSQLRDHTLRYCRYVSLHGEWNSQAYEEHSLILQRI 180 EFH L+E +G L +F+R L + +L +Y S G + +Y+EH ++ I Sbjct: 145 LSGEFHLKLAEAAGNAPLVSFQRSL--VSQTSLIIAQYES--GNRSHCSYDEHMQLIDAI 200 Query: 181 VERDEEGAEKVM---QDHISNSLS 201 RD E A +M DHI + L+ Sbjct: 201 EARDAEQAVSLMMHHMDHIDSKLN 224 >ref|NP_831478.1| Transcriptional regulator, GntR family [Bacillus cereus ATCC 14579] gb|AAP08679.1| Transcriptional regulator, GntR family [Bacillus cereus ATCC 14579] Length = 223 Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 99/184 (53%) Query: 9 ELKQKIIDNELKPGQNVHEESLAALLGVSRTPLREAIQRLENEDFLVRQPNGRLKVAPIT 68 +L+ II+ LKP + +++ LA LGVSRTP+REA+Q LE + P + K+API Sbjct: 22 QLQNWIIEGVLKPNEKINDGELAEALGVSRTPVREALQILELSGLVEMVPGQKTKIAPIK 81 Query: 69 VEELEEIFLVRGMLEGHIAKNAAKNATPQDIQHMTAMVEKTNQSLYLGSDKDALPFGFEF 128 ++++ I+ L I K A +N T DIQ ++ + + S+ + K AL +F Sbjct: 82 LDDVSIIYETMAGLHSIIGKQALQNITDADIQILSEINDHFQHSIEKKNAKQALKLDIQF 141 Query: 129 HDYLSEISGLHTFERILSQLRDHTLRYCRYVSLHGEWNSQAYEEHSLILQRIVERDEEGA 188 H+ +S I+ E L ++ H LR + SQ+ EEH I+Q + ++DE+ Sbjct: 142 HNTISSIAKNQYIEPFLENMQLHVLRLEYLFFQNFVPASQSIEEHHSIIQALQKQDEKQM 201 Query: 189 EKVM 192 E++M Sbjct: 202 EQIM 205 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.133 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 308,528,024 Number of extensions: 12198854 Number of successful extensions: 35206 Number of sequences better than 1.0e-05: 566 Number of HSP's gapped: 35038 Number of HSP's successfully gapped: 566 Length of query: 216 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 95 Effective length of database: 428,710,599 Effective search space: 40727506905 Effective search space used: 40727506905 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 123 (52.0 bits)