BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0534.0014.p
         (155 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00051954.1| COG0454: Histone acetyltransferase HPA2 and r...    51   7e-06

>ref|ZP_00051954.1| COG0454: Histone acetyltransferase HPA2 and related
           acetyltransferases [Magnetospirillum magnetotacticum]
          Length = 147

 Score = 51.2 bits (121), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 71/151 (47%), Gaps = 21/151 (13%)

Query: 10  SNLVIRNAVVDDIDTLRGIFRRAS------LTNEGVREL-IAVHPEWLLWDDAMMPFTRV 62
           ++ V+R A  DD D L  ++RRA       L  + VREL  AV  E+L   D       V
Sbjct: 2   TDPVLRPARPDDTDALVDVWRRAVEATHDFLGPDDVRELEAAVRDEYLGAVDLT-----V 56

Query: 63  AVVDGRVVGFASVRPVXXXXXXXXXXTDPDWMRQGVASALIEDIARHGMRVEV---TANP 119
           A VDGRV GFA                DP    +G+  AL++ + R    VE+     NP
Sbjct: 57  AEVDGRVAGFAGT----VGHRVEMLFVDPALHGRGIGRALLDAVGRGLPVVELDVNEQNP 112

Query: 120 YAIGFYESVGFAASGFANT--QGGPAPRMLL 148
            A+ FY ++GF  +G + T  QG P P + L
Sbjct: 113 GALAFYRALGFEVTGRSETDDQGRPFPLLHL 143


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.322    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 205,361,898
Number of extensions: 6564570
Number of successful extensions: 13555
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 13559
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 757,237,578
Length adjustment: 113
Effective length of query: 42
Effective length of database: 450,431,391
Effective search space: 18918118422
Effective search space used: 18918118422
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)