BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0534.0012.p (914 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00018047.1| hypothetical protein [Chloroflexus aurantiacus] 288 3e-76 ref|ZP_00091643.1| COG2909: ATP-dependent transcriptional regula... 251 4e-65 ref|NP_252610.1| probable transcriptional regulator [Pseudomonas... 236 3e-60 ref|ZP_00125504.1| COG2909: ATP-dependent transcriptional regula... 224 1e-56 ref|NP_742928.1| transcriptional regulator, LuxR family [Pseudom... 223 1e-56 >ref|ZP_00018047.1| hypothetical protein [Chloroflexus aurantiacus] Length = 566 Score = 288 bits (738), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 202/584 (34%), Positives = 296/584 (50%), Gaps = 47/584 (8%) Query: 9 LQESSYYNL--AMTITIVSAKLFIPPARSKSVVRPRLLERLNGSLQGKLTVLSAAAGYGK 66 +Q +S + L M I I+ KL P V RPRL ER++ +L +LT+++A G+GK Sbjct: 1 MQSTSQFTLITCMPIPILQTKLHPPSLADCFVPRPRLTERIHTALNNRLTIIAAPPGFGK 60 Query: 67 TTLASEWLAV-CGRRATWLSLDAGDNDPARFLTYLFAACRSIG-VNIGEGVF-AVLQSPQ 123 TT+ + WLA W SL+ DNDP F T + AA +++ V+ E A + +P+ Sbjct: 61 TTVMAAWLATNTSENVAWYSLEEDDNDPICFFTCIAAALQTVAPVSALESALGAAVANPR 120 Query: 124 PPPAESLLTALLNEISSDSEPSI-LVLDDYHVITAEPVNQAVAFLLEHLPPQMHLVIATR 182 L ALLN++ S+ S+ LV DDYH IT +P++ A+ +L++HLP +HLV +R Sbjct: 121 -----ELTVALLNDLFVFSDRSVVLVFDDYHHITRQPIHDALVYLIDHLPNNIHLVFISR 175 Query: 183 EDXXXXXXXXXXXHQLTELRAADLRFNAAEAAEFLGGVMGLTLSAKDVMLLESRTEGWIA 242 D QLTE+RA DLRF AEAA+FL MGL+LSA+ + LE RTEGW+A Sbjct: 176 VDPPLPLGRWRVRGQLTEIRADDLRFTEAEAAQFLNQTMGLSLSAEAIRTLEERTEGWVA 235 Query: 243 GLQLAALSMQGRNDTTGFIQSFTGSHKFVLDYLIEEVLQQQPASIQAFLQFTSVLDKMCG 302 GLQLAALS+Q ++ I +F GS+++V DYL +EVL +QP S++ FL TS+L++ Sbjct: 236 GLQLAALSLQKSSNPGQIIAAFAGSNRYVADYLTDEVLARQPESLRDFLLKTSILERFNA 295 Query: 303 PLCDAVLGKDSEGASRSTGQRTLEYLEHANLFLIPLDNERRWYRYHHLFADLLRERLNQG 362 LC+ +L + L LE ANLF+IPLD++ WYRYHHLFADLL+ RL Q Sbjct: 296 ALCNHLLQC-------VCSESILTDLERANLFIIPLDSDANWYRYHHLFADLLKRRLAQ- 347 Query: 363 FFPSEGGKEKTVSELHLRASQWYEDNXXXXXXXXXXXXXXXXXXXXXLTEGEGMPLLFRG 422 +++LH RA++W+E N L E Sbjct: 348 ------ANPAGITDLHRRAAEWFEQNNFTLDAIRHWIAADEPERVAALMERTLSQSWGHA 401 Query: 423 AVTPVLNWLQSLPEEELDAIPSLRVMYASALLMTGR--------LSSVEQKLQAAEQALH 474 + +++ +++LP+ L P L L G L E+ L+ QA + Sbjct: 402 ELAGLMHRIEALPDTVLAKYPILSAFLGWTWLWLGYDNARTLPLLERAERNLKDEPQASY 461 Query: 475 GAVLDEKTRDLIGHIASIRAMLAVSKHQADPIA-AESRRALEYLHPDNLAVRAAAAWTLG 533 G IR+ +A + H P A + +AL+ L +L R A + Sbjct: 462 AR----------GRFQVIRSYIARAVHNDAPHAWLLAEQALQQLAEHDLLWRGFAQSNIA 511 Query: 534 YAYQLQGEQGLAGA--AYNEALSVSKRIGHVMISIMATLGRGNI 575 G GLA AYNEA+ + + G + +A R + Sbjct: 512 IVTHSMG-LGLAQTERAYNEAIRLCRAAGDPTTAWIAECARVQV 554 >ref|ZP_00091643.1| COG2909: ATP-dependent transcriptional regulator [Azotobacter vinelandii] Length = 900 Score = 251 bits (642), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 243/922 (26%), Positives = 380/922 (41%), Gaps = 80/922 (8%) Query: 26 AKLFIPPARSKSV--VRPRLLERLNGSLQGKLTVLSAAAGYGKTTLASEW---LAVCGRR 80 A F+PP RS + VRPRL+ RL + L ++ A AG+GKTTL ++W L G+ Sbjct: 25 ATKFVPP-RSPGLLLVRPRLMARLEPLAERSLALVCAGAGFGKTTLLAQWRGQLQEHGQA 83 Query: 81 ATWLSLDAGDNDPARFLTYLFAACRSIGVNIGEGVFAVLQSPQPPPAESLLTALLNEISS 140 WLSLD GD+ P F YL A + ++ G G + P + + L+N + + Sbjct: 84 VAWLSLDEGDDVPEYFCHYLLDAL--LPLHPGLGWRLGFLAAGLPSIDLVFGHLINAVQA 141 Query: 141 DSEPSILVLDDYHVITAEPVNQAVAFLLEHLPPQMHLVIATREDXXXXXXXXXXXHQLTE 200 P L++DDYH I +++A A+LLEH P H+++ +R +QL E Sbjct: 142 VEAPLYLIVDDYHAIRNPAIHRAFAYLLEHAPANFHVLLGSRSLPTLPLSRLRSRNQLIE 201 Query: 201 LRAADLRFNAAEAAEFLGGVMGLTLSAKDVMLLESRTEGWIAGLQLAALSMQGRNDTTGF 260 + DLRFN EA + LTLS L TEGWI G+Q+A LS +++ Sbjct: 202 VDTNDLRFNLCEARHYFADSAALTLSNAQTQRLLELTEGWITGMQMATLSPSIKDNPAQA 261 Query: 261 IQSFTGSHKFVLDYLIEEVLQQQPASIQAFLQFTSVLDKMCGPLCDAVLGKDSEGASRST 320 I S + + V YL + V + PA++ FL TS+LD+ C LCDAV G R Sbjct: 262 IDSLSHGGRLVGRYLEDVVFEPLPAAVDDFLMRTSILDRFCAELCDAVTG-------RHD 314 Query: 321 GQRTLEYLEHANLFLIPLDNERRWYRYHHLFADLLRERLNQGFFPSEGGKEKTVSELHLR 380 G L+++E NLF+ LD+ +W+RYHHLFA+ L+ RL + + ++ LH R Sbjct: 315 GHAMLDWIERHNLFVAALDDHGQWFRYHHLFAETLQARLRR-------RTDLDIAALHER 367 Query: 381 ASQWYEDNXXXXXXXXXXXXXXXXXXXXXLTEGEGMPLLFRGAVTPVLNWLQSLPEEELD 440 A W+ L RG + +L WLQ LP + Sbjct: 368 AGNWFAGQSLWAEATRHALAAGKVESAPGRAGLGAQSLAERGDIDTLLGWLQQLPITADE 427 Query: 441 AIPSLRVMYASALLMTGRLSSVEQKLQAAEQ--ALHGAVLDEKTRDLIGHIASIRAMLAV 498 SL++ A AL R + L + A+H A RDL + ++ A+ Sbjct: 428 HRISLQLNLAWALAHRFRFDESRRLLGELRRWFAVHPA-----RRDLRVKLDAVAAICEA 482 Query: 499 SKHQADPIAAESRRALEYLHPDNLAVRAAAAWTLGYAYQLQGEQGLAGAAYNEALSVSKR 558 A + L + + V L Y + + G+ A A L Sbjct: 483 FAENVQTGIALAEPLLAQIPCGDSWVDGLVCNVLSYCHLVLGQHEEAQAVQRHTLYPGAP 542 Query: 559 IGHVMISIMATLGRGNIQEAENRLPAAAGSYLQVLEWAG---DPPLPVACEAHLGLARIY 615 ++ +++ G + L A +LQ +E A P + LA + Sbjct: 543 TENLFVTVHRAFILGQSHLRQGDLRTAEACFLQAMESADRLTGPQSSGSATLAASLAELA 602 Query: 616 YEWNEWDTALMHVQQSILLAGQFEDSDREXXXXXXXXXXXXXXXXXSEAAAILEQADDFA 675 YE +W+ V+Q L + D +A +L+ + A Sbjct: 603 YEHGDWERLDALVRQRGLQIDRVAPLDGVLSVYRALSRRALAEDDGVQARLLLQHGQEIA 662 Query: 676 RQRQYWTQIPHIAAVQVPVMLRQGNLEAA---------------AILAEQHGLPLSLXXX 720 QR++ + A QV + L++ +L A I +H ++ Sbjct: 663 AQRRWNRLQAALLAEQVRLQLQRDDLAGAEHMLRRIEMLKSDEGTIPGCRHYARIARARL 722 Query: 721 XXXXXXXXXXXXXXXXXXRQTAVKGRQDERLKGMILYAAALYKCGDNSGAAHTLAEAMRI 780 + +G+ E + L+A AL++ + A TL A+++ Sbjct: 723 LLAQGLGLAAADCLAGVVAEFEARGQLLEAARLRPLWAIALWQGDERDAAVATLLPALQL 782 Query: 781 AEPGGCIRSFVDEG----PEAERLLRGSEIPGEMLDY----RRKLLAAFAAETPETLEIL 832 + + S D G P R GE+ Y R +L AE P + Sbjct: 783 GQRENLLCSLTDAGRALLPLLSRCASAEAGSGELAGYLAILRERLGGDDCAEPPFS---- 838 Query: 833 TSSQTGASRHHIRPDQPLFEKLSRRELEILQLIAQGLSNREIGDRMFLALSTVKGYNRNI 892 LS RE + L+L+A G SN+EI + +++ TVK + +N+ Sbjct: 839 ---------------------LSERESQTLRLVAAGQSNKEIARTLDISVETVKWHLKNL 877 Query: 893 FDKLQVSRRTEAIARARMLGLL 914 + KLQV+ RT A++RAR L LL Sbjct: 878 YGKLQVTSRTRAMSRARELSLL 899 >ref|NP_252610.1| probable transcriptional regulator [Pseudomonas aeruginosa PA01] pir||G83156 probable transcription regulator PA3921 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG07308.1| probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Length = 906 Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 176/593 (29%), Positives = 272/593 (45%), Gaps = 31/593 (5%) Query: 13 SYYNLAMTITIVSAKLFIPPARSKSVVRPRLLERLNGSLQGKLTVLSAAAGYGKTTLASE 72 ++ + + + F PP S V RPRL RL L G+L +++A AG+GK++LA E Sbjct: 7 TFSGTPSAVLPTANRFFRPPLPSAHVARPRLCRRLRDGLDGRLLLIAAPAGFGKSSLAIE 66 Query: 73 WLAVCGRR--ATWLSLDAGDNDPARFLTYLFAACRSIGVNIGE---GVFAVLQSPQPPPA 127 + R + WL L + ++DP RFL L R +GE G+ + Q QP Sbjct: 67 FCESLDPRWQSLWLGLSSRESDPGRFLERLLDGLRQYHPTLGEEALGLLKMRQRHQPFAF 126 Query: 128 ESLLTALLNEISSDSEPS---ILVLDDYHVITAEPVNQAVAFLLEHLPPQMHLVIATRED 184 E+ L LL+E++ +P +LVLDDYH+ +++ + FLL HLP + L++ +R+ Sbjct: 127 ETWLDDLLDELAPCLDPQRPLLLVLDDYHLAQGAVLDRCLQFLLNHLPEGLVLLVTSRQR 186 Query: 185 XXXXXXXXXXXHQLTELRAADLRFNAAEAAEFLGGVMGLTLSAKDVMLLESRTEGWIAGL 244 QL EL DLR A E+ + GL L + L R+EGW+AGL Sbjct: 187 PDWHLARLRLSRQLLELSEQDLRLTAEESGALMAAS-GLELDEDALDALLERSEGWVAGL 245 Query: 245 QLAALSMQGRNDTTGFIQ-SFTGSHKFVLDYLIEEVLQQQPASIQAFLQFTSVLDKMCGP 303 +L L+ R D + G+ + + DYL+EEV+++QP +QAFL T+ ++ C Sbjct: 246 RLWLLA---RGDPEEQVSPGVHGADELIRDYLLEEVIERQPPEVQAFLAQTARFERFCAE 302 Query: 304 LCDAVLGKDSEGASRSTGQRTLEYLEHANLFLIPLDNERRWYRYHHLFADLLRERLNQGF 363 LCD V A L++L+ +FL+PLD +W+RYHHLF+DLL R F Sbjct: 303 LCDTVREAGDSAA-------ILDHLQQHQVFLVPLDENGQWFRYHHLFSDLLLARPLPDF 355 Query: 364 FPSEGGKEKTVSELHLRASQWYEDNXXXXXXXXXXXXXXXXXXXXXLTEG-EGMPLLFRG 422 PS G LHLRA W+ + L + LL Sbjct: 356 GPSAGS-------LHLRACGWFSRHGLLDQAVEQALRAGQPDVAASLVQNLSEEQLLAEQ 408 Query: 423 AVTPVLNWLQSLPEEELDAIPSLRVMYASALLMTGRLSSVEQKLQAAEQALHGAVLDEKT 482 + +L W LP+ L + P L ++Y AL + +L + E+ A + A DE Sbjct: 409 NIATLLRWKMDLPDSLLASTPRLILLYGWALALACQLDAAEEL--AGQLARFLPAPDESA 466 Query: 483 -RDLIGHIASIRAMLAVSKHQADPIAAESRRALEYLHPDNLAVRAAAAWTLGYAYQLQGE 541 RDL+ ++ ++A + D A R AL+ L + R TL +G+ Sbjct: 467 QRDLLAQWQALSGVIARGRGDIDKAEAHCREALQDLAGERYGTRLQCLSTLSNLAVTRGD 526 Query: 542 QGLAGAAYNEALSVSKRIGHVMISIMATLGRGNIQEAENRLPAAAGSYLQVLE 594 A +AL ++R G+ + + R + +A + A Q LE Sbjct: 527 FWQARNYNRDALEFAQRYGNPLFEALVHYDRARVLQARGEVARAEEEVRQGLE 579 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 39/63 (61%), Positives = 52/63 (82%) Query: 852 EKLSRRELEILQLIAQGLSNREIGDRMFLALSTVKGYNRNIFDKLQVSRRTEAIARARML 911 E LS REL +L+LIAQGLSN+EI +R+F++L TVK + R+I DKL V RRT+A+ARA+ + Sbjct: 843 EVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSHARHINDKLGVERRTQAVARAKHM 902 Query: 912 GLL 914 GLL Sbjct: 903 GLL 905 >ref|ZP_00125504.1| COG2909: ATP-dependent transcriptional regulator [Pseudomonas syringae pv. syringae B728a] Length = 920 Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 167/572 (29%), Positives = 263/572 (45%), Gaps = 29/572 (5%) Query: 21 ITIVSAKLFIPPARSKSVVRPRLLERLNGSLQGKLTVLSAAAGYGKTTLASEWLAVC--G 78 I + + F PP V R RL +RL+ L G+L ++ A AG+GK++LA E+ Sbjct: 26 IPALEGRFFRPPLPEGYVPRARLCQRLDAGLGGRLLLVCAPAGFGKSSLAVEFCQGLPDN 85 Query: 79 RRATWLSLDAGDNDPARFLTYLFAACRSIGVNIGEGVFAVL---QSPQPPPAESLLTALL 135 + WL L A D+DP RFL L A+ + +G A+L Q QP E L LL Sbjct: 86 WQNVWLGLSARDSDPGRFLERLLASLQQFFPQLGTQAMALLKMRQRHQPFAFEEWLDGLL 145 Query: 136 NEISSD---SEPSILVLDDYHVITAEPVNQAVAFLLEHLPPQMHLVIATREDXXXXXXXX 192 +E++ S+P +LVLDDYH+ +++ + FLL HLP + +++ +R+ Sbjct: 146 DELAMHLMLSKPLLLVLDDYHLAQGPVLDRCLQFLLNHLPAGLVVMVTSRQRPDWHLARL 205 Query: 193 XXXHQLTELRAADLRFNAAEAAEFLGGVMGLTLSAKDVMLLESRTEGWIAGLQLAALSMQ 252 QL E+ DLR AE+ L G +L ++ + L R+EGW+AGL+ L+ Sbjct: 206 RLTRQLLEINEQDLRLTHAESMAVLERHSG-SLDSEALQSLIQRSEGWVAGLRFWLLAAS 264 Query: 253 GRNDTTGFIQSFTGSHKFVLDYLIEEVLQQQPASIQAFLQFTSVLDKMCGPLCDAVL-GK 311 D + Q+ GS + +YL+EEV+ PA +QAFL T+ L++ C LCDA G Sbjct: 265 EAGDESALPQTLRGSEVLIREYLLEEVIDCLPADVQAFLYDTACLERFCAELCDAARDGH 324 Query: 312 DSEGASRSTGQRTLEYLEHANLFLIPLDNERRWYRYHHLFADLLRERLNQGFFPSEGGKE 371 DS G L YL+ +FL+PLD + W+RYHHLF+DLLR R G P Sbjct: 325 DSAG--------MLGYLQAHQVFLVPLDEQGHWFRYHHLFSDLLRARQAAGAPP------ 370 Query: 372 KTVSELHLRASQWYEDNXXXXXXXXXXXXXXXXXXXXXLTEG-EGMPLLFRGAVTPVLNW 430 + LHL A +W+ L + LL V +L W Sbjct: 371 ---TRLHLNACRWFSAQGQLDEAVEQALRAGHLDVAANLVQNLSEEQLLAEQNVGMLLRW 427 Query: 431 LQSLPEEELDAIPSLRVMYASALLMTGRLSSVEQKLQAAEQALHGAVLDEKTRDLIGHIA 490 LP++ L + P L V+YA AL + +L + E+ + L + + ++ Sbjct: 428 KMDLPDDLLTSTPRLIVLYAWALGLACQLDAAEELANQLSRFLPAPSATAQ-KSMLAQWL 486 Query: 491 SIRAMLAVSKHQADPIAAESRRALEYLHPDNLAVRAAAAWTLGYAYQLQGEQGLAGAAYN 550 ++ ++A + ++ AL L R TL G+ A Sbjct: 487 ALSGIIARGRGDSEKTQHYCTEALLSLPEKRYGQRLVCLSTLANLAVANGDLWRARVLNR 546 Query: 551 EALSVSKRIGHVMISIMATLGRGNIQEAENRL 582 +AL +++R+ + + +A R + +A + Sbjct: 547 DALELAQRVANPLFEALAHYDRARVLQARGEI 578 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/63 (57%), Positives = 49/63 (77%) Query: 852 EKLSRRELEILQLIAQGLSNREIGDRMFLALSTVKGYNRNIFDKLQVSRRTEAIARARML 911 + LS REL +LQLIAQG SN+EI +++F++L TVK + +I KL V RRT+A+ARA+ L Sbjct: 857 DCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKTL 916 Query: 912 GLL 914 GLL Sbjct: 917 GLL 919 >ref|NP_742928.1| transcriptional regulator, LuxR family [Pseudomonas putida KT2440] gb|AAN66392.1| transcriptional regulator, LuxR family [Pseudomonas putida KT2440] Length = 905 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 168/574 (29%), Positives = 258/574 (44%), Gaps = 32/574 (5%) Query: 18 AMTITIVSAKLFIPPARSKSVVRPRLLERLNGSLQGKLTVLSAAAGYGKTTLASEWLAVC 77 + + + + F PP V R RL +RL L G+L +++A AG+GK++LA E+ Sbjct: 12 SQALGLRDGRFFRPPLPDGHVPRLRLCQRLEAGLGGRLLLVNAPAGFGKSSLAIEFCETL 71 Query: 78 GR--RATWLSLDAGDNDPARFLTYLFAA----CRSIGVNIGEGVFAVLQSPQPPPAESLL 131 R+ WL L D DP RFL L C ++G G+ + Q QP E L Sbjct: 72 PEHWRSLWLGLSQRDADPGRFLERLLEGLQQYCPALG-GQAMGLLKMRQRHQPFAFEEWL 130 Query: 132 TALLNEIS---SDSEPSILVLDDYHVITAEPVNQAVAFLLEHLPPQMHLVIATREDXXXX 188 LL+E++ P +LVLDDYH+ +++ + F L HLPP + L++ +R+ Sbjct: 131 DGLLDELALYLQADTPLLLVLDDYHLAQGPVLDRCLQFFLNHLPPGLVLLVTSRQRPGWH 190 Query: 189 XXXXXXXHQLTELRAADLRFNAAEAAEFLG-GVMGLTLSAKDVMLLESRTEGWIAGLQLA 247 QL EL DLR A E+ +G GL A D ++ R++GW+AGL+ Sbjct: 191 LARLRLSRQLVELNEQDLRLTADESLAVIGRQPTGLRGQALDNLI--QRSDGWVAGLRFW 248 Query: 248 ALSMQGRNDTTGFIQSFTGSHKFVLDYLIEEVLQQQPASIQAFLQFTSVLDKMCGPLCDA 307 L+ D Q+ G + DYL+EEV+ + PA +QAFL T+ ++ C PLCDA Sbjct: 249 QLAASDSADEQALPQALHGGEGLIRDYLLEEVIDRLPADVQAFLDETACQERFCAPLCDA 308 Query: 308 VLGKDSEGASRSTGQRTLEYLEHANLFLIPLDNERRWYRYHHLFADLLRERLNQGFFPSE 367 + G+ A L +L+ +FL+PLD W+RYHHLF+DLLR R Sbjct: 309 MRGRHDSAA-------VLSFLQAHQVFLVPLDEHGHWFRYHHLFSDLLRSR--------- 352 Query: 368 GGKEKTVSELHLRASQWYEDNXXXXXXXXXXXXXXXXXXXXXLTEG-EGMPLLFRGAVTP 426 E V+ LHLRA +W+E L + LL V Sbjct: 353 QASESQVA-LHLRACRWFEAQDLLDEAVEQALRAGHLDVAADLVQSLSEEQLLAEQNVGM 411 Query: 427 VLNWLQSLPEEELDAIPSLRVMYASALLMTGRLSSVEQKLQAAEQALHGAVLDEKTRDLI 486 +L W LP+ L + P L V+Y+ AL + +L + E+ L A + ++ Sbjct: 412 LLRWKMDLPDSLLISTPRLIVLYSWALGLACQLDAAEE-LAGYLSRFLPAPSATAQKSML 470 Query: 487 GHIASIRAMLAVSKHQADPIAAESRRALEYLHPDNLAVRAAAAWTLGYAYQLQGEQGLAG 546 ++ ++A + + A AL+ L R TL G+ A Sbjct: 471 AQWLALSGVIARGRGDRERTLAYCGEALQSLPSKRYGQRLVCLSTLSNLAIADGDFWRAR 530 Query: 547 AAYNEALSVSKRIGHVMISIMATLGRGNIQEAEN 580 EAL +++R+G+ + +A R + A Sbjct: 531 GWNREALELAQRVGNPLFEALAHYDRARVLHARG 564 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 34/63 (53%), Positives = 49/63 (77%) Query: 852 EKLSRRELEILQLIAQGLSNREIGDRMFLALSTVKGYNRNIFDKLQVSRRTEAIARARML 911 E LS RE+ +L+LIAQG SN++I +R+F++L TVK + +I KL V RRT+A+A+A+ L Sbjct: 842 EALSGREMAVLELIAQGCSNQQISERLFISLHTVKTHASHINSKLGVERRTQAVAKAKSL 901 Query: 912 GLL 914 GLL Sbjct: 902 GLL 904 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.133 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,145,358,352 Number of extensions: 42265558 Number of successful extensions: 106122 Number of sequences better than 1.0e-05: 166 Number of HSP's gapped: 105858 Number of HSP's successfully gapped: 203 Length of query: 914 Length of database: 757,237,578 Length adjustment: 135 Effective length of query: 779 Effective length of database: 390,699,213 Effective search space: 304354686927 Effective search space used: 304354686927 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)