BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0534.0008.p (589 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00019352.1| hypothetical protein [Chloroflexus aurantiacus] 209 1e-52 ref|NP_488995.1| ATP-binding protein of ABC transporter [Nostoc ... 205 2e-51 ref|ZP_00108235.1| COG1132: ABC-type multidrug transport system,... 204 3e-51 ref|NP_925210.1| HlyB/MsbA family ABC transporter [Gloeobacter v... 202 2e-50 ref|ZP_00109766.1| COG1132: ABC-type multidrug transport system,... 201 6e-50 >ref|ZP_00019352.1| hypothetical protein [Chloroflexus aurantiacus] Length = 623 Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 142/513 (27%), Positives = 252/513 (49%), Gaps = 42/513 (8%) Query: 95 LENKVGAM-LQRSLFDAIAKADLCKLDQADYLLQIERAKDTVWFKLTNAVNDVFHFLGSV 153 L N V M +Q++L DL + A Y +++ A+ ++ VN F + + Sbjct: 127 LSNMVNVMIMQKALL-----LDLHYFEDAQYYDKLQNARRETNWRAMAMVNTAFSAIQQI 181 Query: 154 AGFCMSALIIVRLGVLYLLAFIVLGLLYNYFVKKN--TKEHIDLMKRQEHEDRKLKYLSN 211 + + L L+A I+ G F+ + ++ L+ + E R+++YL + Sbjct: 182 --LTLGSFAASLLWFSPLIALILFGATIPAFLAQTHFSQLRFRLLTWRAPEFRRMQYLEH 239 Query: 212 LMQDRSNQKEIRSFKIFDWLETKRLGKFDEIRDIDLAFSKKWTVIGCLW-----SGLMIG 266 L+ + KE++ F + L + ++ D A +++ ++I +W +G + Sbjct: 240 LLTVDTAAKEVKLFALGLPLLQRHQEQYQRFFTEDAALARRRSLISMVWGVVASAGYYVA 299 Query: 267 LENSILMVMCYGVALTMLTVDQLIVLSQGQGQIIVGINAFAEFFSQAQKNKIYINEFREL 326 I + + + +T L + Q Q + A+ + + +++ + Sbjct: 300 YGWIIWQTVAGAITIGGMTF-YLTLFRQSQSVVQTLFGNLAQLY----EGGLFLGNLFDF 354 Query: 327 ITPEEPGIPAGPN-PALARAKTVMELQHVSFSYGDHSP-ALKDINLRVGKGESIVLVGEN 384 + EP + +G N P + +E ++VSF Y D AL+ INL + GE I LVG N Sbjct: 355 LA-LEPQMRSGRNLPVPPIIRHGIEFRNVSFRYPDREDWALRSINLHIAPGEKIALVGAN 413 Query: 385 GSGKSTLAKVMAGLLKPTEGIV---------------RKNCATATAAFQDYAKFEFSVRD 429 G+GK+TL K++ L PTEG + R+ FQD+ +++ + R+ Sbjct: 414 GAGKTTLIKLLTRLYDPTEGQILLDGVDLRDYDLEQLRQRIGVI---FQDFVRYQATARE 470 Query: 430 NVGIGDVTSINDNDKIREATIKGQINHVIEQYPKRLDTILGKKFDADGIDMSEGQWQKVA 489 N+G G + + + +IR A +G + V+ P +T+LG+ F+ +G ++S GQWQK+A Sbjct: 471 NIGFGQIDDLANEPRIRSAAERGGADEVLRHLPDGYETMLGRWFE-NGAELSGGQWQKIA 529 Query: 490 ISRAFMRDADFIIFDEPSASLDALSEIQQFNNIGKYFRGKSVVLVSHRIGIAKLADRIVF 549 + RAFMRD++ ++ DEP+A+LDA E + F G+ VL+SHR ++ADRIV Sbjct: 530 LGRAFMRDSEILVLDEPTAALDAEREYEIFQRFRDLTAGRIAVLISHRFSTVRMADRIVV 589 Query: 550 MKHGEIVEEGTHAELMQLNGEYCSFFMNQAKWY 582 ++HG+I E GTH EL+ +G Y F QA+ Y Sbjct: 590 LEHGQITEMGTHQELLARDGTYARLFHMQAEGY 622 >ref|NP_488995.1| ATP-binding protein of ABC transporter [Nostoc sp. PCC 7120] pir||AC2425 ATP-binding protein of ABC transporter all4955 [imported] - Nostoc sp. (strain PCC 7120) dbj|BAB76654.1| ATP-binding protein of ABC transporter [Nostoc sp. PCC 7120] Length = 606 Score = 205 bits (522), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 131/491 (26%), Positives = 247/491 (50%), Gaps = 34/491 (6%) Query: 115 DLCKLDQADYLLQIERAKDTVWFKLTNAVNDVFHFLGSVAGFCMSALIIVRLGVLYLLAF 174 DL + +++ ++ A+ + + VN F + + ++V+ + ++ Sbjct: 126 DLTHFENSEFYDKLTNARREASVRPLSLVNRTFGLVQNALSLITFGFLLVKFSIWAVIVL 185 Query: 175 IVLGLLYNYFVKKNTKEHIDLMKRQEHEDRKLKYLSNLMQDRSNQKEIRSFKIFDWLETK 234 IV + + E L + E R+ Y+ NL+ E++ +++ D L + Sbjct: 186 IVAAMPAFIAETRFAGEAFRLFSWRAPETRQQHYIENLLAREDFATEVKLYQLGDMLLGR 245 Query: 235 RLGKFDEIRDIDLAFSKKWTVIGCLWSGLMIGLENSILMVMCYGVALTMLTVDQ------ 288 F ++ + D + T+ +W G ++GL +++ + Y + V + Sbjct: 246 YRNVFRQLYNED----RDLTIRRGMW-GYLLGLVSTVAFYIAYAWIVIEAVVGRISLGDM 300 Query: 289 ---LIVLSQGQGQIIVGINAFAEFFSQAQKNKIYINEFRELITPEEPGIPAGPNPALARA 345 L V QGQ + + + ++ +Y++ + + E+ P G Sbjct: 301 TMYLTVFRQGQSTFANALTSIGGMY----EDNLYLSNLYDFL-EEKVTQPWGKITKGIDT 355 Query: 346 KTVMELQHVSFSY-GDHSPALKDINLRVGKGESIVLVGENGSGKSTLAKVMAGLLKPTEG 404 + + ++V+F+Y G PALK+I+L + GE + +VGENGSGK+TL K++ L P G Sbjct: 356 QDGIRFENVTFTYPGSSQPALKNISLHLKPGEKLAIVGENGSGKTTLIKLLTRLYTPDSG 415 Query: 405 IVRKNCATATA------------AFQDYAKFEFSVRDNVGIGDVTSINDNDKIREATIKG 452 + + + FQ++ +++F+V +N+G+GDV S+ND + + A KG Sbjct: 416 RILLDGVDLQSWNVDALRQRIGVIFQNFVRYQFTVGENIGVGDVDSLNDTTRWQIAAQKG 475 Query: 453 QINHVIEQYPKRLDTILGKKFDADGIDMSEGQWQKVAISRAFMR-DADFIIFDEPSASLD 511 + IE+ P++ T LGK F + G ++S GQWQK+A++RAFMR AD ++ DEP++++D Sbjct: 476 NAHSFIERLPQQFQTQLGKWFKS-GQELSGGQWQKIALARAFMRTQADILVLDEPTSAID 534 Query: 512 ALSEIQQFNNIGKYFRGKSVVLVSHRIGIAKLADRIVFMKHGEIVEEGTHAELMQLNGEY 571 A +E + FN+ + + V L+SHR ++AD+I+ +++GE+ E+GTH EL+ G Y Sbjct: 535 AQAEYEIFNHFRALTQNQMVFLISHRFSTVRMADKILVIENGEVREQGTHEELLAREGLY 594 Query: 572 CSFFMNQAKWY 582 F+ QA Y Sbjct: 595 AKLFLLQAAGY 605 >ref|ZP_00108235.1| COG1132: ABC-type multidrug transport system, ATPase and permease components [Nostoc punctiforme] Length = 587 Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 139/506 (27%), Positives = 247/506 (48%), Gaps = 64/506 (12%) Query: 115 DLCKLDQADYLLQIERAKDTVWFKLTNAVNDVFHFLGSVAGFCMSALIIVRLGVLYLLAF 174 DL + + +++ ++ A+ + + VN F + + +++V V ++ Sbjct: 107 DLRQFEDSEFYDKLTNARREASVRPLSLVNRTFGLVQNALSLITYGILLVNFSVWAVVVL 166 Query: 175 IVLGLLYNYFVKKNTKEHIDLMKRQEHEDRKLKYLSNLMQDRSNQKEIRSFKIFDWLETK 234 I+ + K E L + E R+ YL NL+ E++ +++ + L + Sbjct: 167 ILAAMPVFIAETKFAGEGFRLFSWRAAETRQQHYLENLLAREDFVTEVKLYQLGEMLLGR 226 Query: 235 RLGKFDEI--RDIDLAFSKKWTVIGCLWSGLMIGLENSILMVMCYGVALTMLTVDQLIVL 292 F ++ D DL + W G ++GL ++ + Y IVL Sbjct: 227 YRNLFHQLYGEDRDLTLRR------GFW-GYLLGLVSTSAFYLAYA----------WIVL 269 Query: 293 SQGQGQIIVG-INAFAEFFSQAQ--------------KNKIYINEFRELITPEEPG---- 333 +G+I +G + + F Q Q ++ +Y++ + + E P Sbjct: 270 ETVRGKISLGDMTMYLTVFRQGQSTFSNALTSIGGMYEDNLYLSNLYDFLEEEVPKSWGK 329 Query: 334 IPAGPNPALARAKTVMELQHVSFSY-GDHSPALKDINLRVGKGESIVLVGENGSGKSTLA 392 G NP + + ++VSF+Y G PAL +I+L + E + +VGENGSGK+TL Sbjct: 330 ATIGLNP-----QDGIRFENVSFTYPGSSKPALTNISLHLKPREKLAIVGENGSGKTTLI 384 Query: 393 KVMAGLLKPTEG---------------IVRKNCATATAAFQDYAKFEFSVRDNVGIGDVT 437 K++ L P G ++R+ FQ++ +++FSV +N+G+GDV Sbjct: 385 KLLTRLYTPDSGRIFLDGLDLQEWDVDVLRRRIGVI---FQNFVRYQFSVGENIGVGDVE 441 Query: 438 SINDNDKIREATIKGQINHVIEQYPKRLDTILGKKFDADGIDMSEGQWQKVAISRAFMRD 497 + + ++ A KG I+Q P+ T LG+ F G ++S GQWQK+A+SRAFMR Sbjct: 442 HLENKNRWETAAEKGMAQSFIDQLPQSFQTQLGRWFKG-GQELSGGQWQKIALSRAFMRS 500 Query: 498 -ADFIIFDEPSASLDALSEIQQFNNIGKYFRGKSVVLVSHRIGIAKLADRIVFMKHGEIV 556 AD ++ DEP++++DA +E + FN+ + + V+L+SHR ++AD+IV +++GE++ Sbjct: 501 QADILVLDEPTSAIDAQAEFEIFNHFRAITQNQMVLLISHRFSTVRMADKIVVIENGEVI 560 Query: 557 EEGTHAELMQLNGEYCSFFMNQAKWY 582 E+GTH EL+QL G Y F+ QA Y Sbjct: 561 EQGTHEELLQLKGRYAKLFLLQAAGY 586 >ref|NP_925210.1| HlyB/MsbA family ABC transporter [Gloeobacter violaceus] dbj|BAC90205.1| HlyB/MsbA family ABC transporter [Gloeobacter violaceus PCC 7421] Length = 626 Score = 202 bits (515), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 138/493 (27%), Positives = 241/493 (48%), Gaps = 37/493 (7%) Query: 115 DLCKLDQADYLLQIERAKDTVWFKLTNAVNDVFHFLGSVAGFCMSALIIVRLGVLYLLAF 174 +L + + + ++RA+ ++ + SV +++ RLG L Sbjct: 144 ELAYFEDSKFYDALQRAQREAGYRPLGLLIQSLSITQSVVSMGALVVLLARLGAFVLPVL 203 Query: 175 IVLGLLYNYFVKKNTKEHIDLMKRQEHEDRKLKYLSNLMQDRSNQKEIRSFKIFDWLETK 234 ++ + + + L++ + E R++ Y+ LM KEI+ F + + Sbjct: 204 VLASVPLLVTTVRFVRMGYLLVRARTPEARQMSYIKTLMGTDQAAKEIKLFNLGPYFIES 263 Query: 235 RLGKFDEI--RDIDLAFSKKWTVIGCLWSGLMIGLENSILMVMCYG--------VALT-M 283 F ++ +DLA K +G +S+ +CY +AL + Sbjct: 264 FRNLFTKVHRETVDLALRKGAARVG-----------SSVFNAVCYAGLYGYLIWMALRRL 312 Query: 284 LTVDQLIVLSQGQGQIIVGINAFAEFFSQAQKNKIYINE-FRELITPEEPGIPAGPNPAL 342 LT+ L + + Q+ + + +E ++ +N ++I++ FR L + A P P Sbjct: 313 LTIGDLTLYAGAVLQLNNQLQSLSESGARVYQNALFIDDLFRFLDLEPRRAVAAAPRPVP 372 Query: 343 ARAKTVMELQHVSFSY-GDHSPALKDINLRVGKGESIVLVGENGSGKSTLAKVMAGLLKP 401 R + + ++VSF Y G L ++ + GE++ LVGENGSGK+TL K++ L +P Sbjct: 373 ERIEQGIRFENVSFRYPGSEREVLSGVSFEIRPGETVALVGENGSGKTTLVKLLTRLYEP 432 Query: 402 TEGIV---RKNCAT---------ATAAFQDYAKFEFSVRDNVGIGDVTSINDNDKIREAT 449 T G + ++ A FQD+ +F + RDN+G G V ++ D ++I A Sbjct: 433 TGGRILLEGRDLAEYEPEQLRKLVGVVFQDFVRFHATARDNIGYGRVDALTDFERIEAAA 492 Query: 450 IKGQINHVIEQYPKRLDTILGKKFDADGIDMSEGQWQKVAISRAFMRDADFIIFDEPSAS 509 +G + +I + DT+LGK F +G ++S GQWQK+A++RA+MRDA ++ DEP+A+ Sbjct: 493 GRGGADALITGLARGYDTMLGKWFR-EGQELSGGQWQKIALARAYMRDAPVLVLDEPTAA 551 Query: 510 LDALSEIQQFNNIGKYFRGKSVVLVSHRIGIAKLADRIVFMKHGEIVEEGTHAELMQLNG 569 LDA +E + F+ + +GK +L+SHR ADRIV ++ G + E+GTH EL NG Sbjct: 552 LDARAEHEVFSKFRELRQGKMALLISHRFSTVLTADRIVVLEGGRVGEQGTHRELAARNG 611 Query: 570 EYCSFFMNQAKWY 582 Y F QA+ Y Sbjct: 612 RYAELFTLQAEGY 624 >ref|ZP_00109766.1| COG1132: ABC-type multidrug transport system, ATPase and permease components [Nostoc punctiforme] Length = 630 Score = 201 bits (510), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 102/253 (40%), Positives = 164/253 (64%), Gaps = 16/253 (6%) Query: 346 KTVMELQHVSFSYGD-HSPALKDINLRVGKGESIVLVGENGSGKSTLAKVMAGLLKPTEG 404 +T ++++++SF+Y + P LK+INL++ E IVLVGENG+GK+TL K++ L P++G Sbjct: 379 QTGIDIKNLSFTYPNSERPILKNINLKIHPNEMIVLVGENGAGKTTLTKLLCRLYDPSQG 438 Query: 405 IVRKNC------------ATATAAFQDYAKFEFSVRDNVGIGDVTSINDNDKIREATIKG 452 + N + QDYA+F +VR+NV G++ + D++ I+EA + Sbjct: 439 AIIWNGEDLRSLPLEDLRSRIDVVMQDYARFPTTVRENVAFGNLPKMQDDEAIKEAIAEA 498 Query: 453 QINHVIEQYPKRLDTILGKKFDADGIDMSEGQWQKVAISRAFMR--DADFIIFDEPSASL 510 + VIE+ L+T+LGK+ + GID+S GQWQ++AI+RA +R A+ +I DEP+A+L Sbjct: 499 GLAKVIEKLDGGLETLLGKQLEG-GIDLSGGQWQRLAIARALLRLSPAELLILDEPTANL 557 Query: 511 DALSEIQQFNNIGKYFRGKSVVLVSHRIGIAKLADRIVFMKHGEIVEEGTHAELMQLNGE 570 D +E + +N + +G+ V+VSHR+ +AKLADR+V ++HG+I+E GTH EL+ L G+ Sbjct: 558 DPKTEHEIYNILRTLAKGRIAVVVSHRLALAKLADRVVVLEHGQIIEVGTHDELIALGGQ 617 Query: 571 YCSFFMNQAKWYD 583 Y F QA Y+ Sbjct: 618 YHLMFTRQASSYN 630 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.323 0.139 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 805,403,160 Number of extensions: 32142512 Number of successful extensions: 165766 Number of sequences better than 1.0e-05: 13011 Number of HSP's gapped: 156114 Number of HSP's successfully gapped: 13822 Length of query: 589 Length of database: 757,237,578 Length adjustment: 131 Effective length of query: 458 Effective length of database: 401,559,609 Effective search space: 183914300922 Effective search space used: 183914300922 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)