BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0533.0011.p (378 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAI15466.1| unknown [environmental sequence] 195 1e-48 gb|EAJ36977.1| unknown [environmental sequence] 188 2e-46 gb|EAH87391.1| unknown [environmental sequence] 187 5e-46 gb|EAI29505.1| unknown [environmental sequence] 185 1e-45 ref|NP_421984.1| conserved hypothetical protein [Caulobacter cre... 184 3e-45 >gb|EAI15466.1| unknown [environmental sequence] Length = 409 Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 188/368 (51%), Gaps = 15/368 (4%) Query: 24 VLVMHRNEPVYRYRNGYASLEEKTPIDDGRIINLYSLTKIMTCTAALQLLEKGAFLLNDR 83 LV + E Y G+ E K P+ + I ++YS+TK +T A +QL EK F L+D Sbjct: 41 TLVARKGEVAYLEGLGFMDRENKKPMQEDAIFSIYSMTKSITSIALMQLYEKSLFRLDDP 100 Query: 84 LSDYLPEYTEMNVKKRLPGGELAFERAVNPITVRDLFTMSAGFSYDLELPS-IKEAVSRT 142 + ++P + + V + R P+T+RDL + +G +YD S + A +T Sbjct: 101 VHWHIPSWKNLRVYESGVYPNFITSRPKRPMTIRDLLSHMSGLTYDFMYKSNVDAAYRKT 160 Query: 143 GGKM--PTRAIAEALAKEPLQFEPGTRWNYSLCHDVLAALVEAVDGRRFGTYIREEITGP 200 +M E L++ PL+F PG +WNYS+ DV LVE G + Y ++ I P Sbjct: 161 KVQMNGDLNTFIETLSELPLEFSPGDQWNYSVSTDVCGYLVEHFSGMKLDEYFQKNIFEP 220 Query: 201 LGMTDTGFDLPDGKRSRLAPQYEYSDELGKPVRKDGNGFRLGTEYE----SGGAGLLSTV 256 LGM DTGF P K RLA YE++ G P D +G G E SGG GLLST+ Sbjct: 221 LGMIDTGFYCPKDKADRLACLYEHNPSDG-PKLLDPSGKEAGRTKERVMLSGGGGLLSTM 279 Query: 257 TDYAQFLNTLTNLGTSPDGVRILSPASVELMRTEQ------LTESMRGDFSWEQLKGYSY 310 DY QF + L + G +G RI+ ++E+M T LTE + FS +G + Sbjct: 280 HDYYQFCSMLYHQG-ELNGNRIIGRKTIEMMSTNHLPDNKDLTEMSQSAFSETPYQGVGF 338 Query: 311 GLGVRTHISQARSGSLSPLGEFGWSGAAGCLAVIDPASQLTVMYAQHMLNNQEPFVHPRL 370 GLG T + +S SL+ +GE+GW GAA I+P ++ V++ +L + V L Sbjct: 339 GLGFSTVLDPNKSQSLTDIGEYGWGGAASTTFWINPKEEMVVIFLTQLLPSSTYQVRREL 398 Query: 371 RNIVYACL 378 R++VY+ L Sbjct: 399 RSLVYSAL 406 >gb|EAJ36977.1| unknown [environmental sequence] Length = 332 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 118/334 (35%), Positives = 175/334 (52%), Gaps = 13/334 (3%) Query: 54 IINLYSLTKIMTCTAALQLLEKGAFLLNDRLSDYLPEYTEMNVKKRLPGGELAFERAVNP 113 I +YS+TK +T A +QLLEK F L+D + Y+PE+ + V + + P Sbjct: 2 IFRIYSMTKSITSVAVMQLLEKSRFRLDDPVYWYIPEFKNVGVFQAGVYPNFLTSKPERP 61 Query: 114 ITVRDLFTMSAGFSYDLELPSIKEAVSRTGGKM---PTRAIAEALAKEPLQFEPGTRWNY 170 IT++DL T +G +Y + +A R+ + E+L++ PL+F PG +WNY Sbjct: 62 ITIKDLLTHMSGLTYGFMYRTNVDAAYRSSDTTRPDNLQQFIESLSELPLEFSPGDKWNY 121 Query: 171 SLCHDVLAALVEAVDGRRFGTYIREEITGPLGMTDTGFDLPDGKRSRLAPQYEYSDELGK 230 S+ DVL LVE V G + Y ++ I PLGM DT F P+ K +RLA YE++ G+ Sbjct: 122 SVSTDVLGHLVEVVSGLKLDEYFKQNIFEPLGMADTDFSCPEEKLNRLASLYEHNPS-GE 180 Query: 231 PVRKDGNGFRLGTEYESGGAGLLSTVTDYAQFLNTLTNLGTSPDGVRILSPASVELMRT- 289 P + L ++ SGG GL ST++DY QF + L N G +G RIL +VE M Sbjct: 181 PKLMEVPA--LDVKFLSGGGGLYSTMSDYYQFASMLLNKGKL-NGKRILGRKTVEYMTMN 237 Query: 290 -----EQLTESMRGDFSWEQLKGYSYGLGVRTHISQARSGSLSPLGEFGWSGAAGCLAVI 344 + LTE FS G +GLG I A+S +LS +GEFGW G A + I Sbjct: 238 HLPDGKDLTEMSESAFSETPYAGVGFGLGFSVMIDPAKSQTLSDVGEFGWGGMASTVFFI 297 Query: 345 DPASQLTVMYAQHMLNNQEPFVHPRLRNIVYACL 378 +P + V++ ++ + V LR++VY+ L Sbjct: 298 NPKEDMLVIFLTQLVPSSTYQVRRELRSLVYSAL 331 >gb|EAH87391.1| unknown [environmental sequence] Length = 403 Score = 187 bits (474), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 128/380 (33%), Positives = 184/380 (48%), Gaps = 22/380 (5%) Query: 5 EPLSSFIDRITSWRIPWAEVLVMHRNEPVYRYRNGYASLEEKTPIDDGRIINLYSLTKIM 64 E + S+IDR + L+M +E V G+ LE+K P+ I +YS TKI+ Sbjct: 18 ERMQSYIDRGI---LSCCSTLLMKGSEVVDYRTFGFMDLEDKHPLRKDAIYRMYSNTKIV 74 Query: 65 TCTAALQLLEKGAFLLNDRLSDYLPEYTEMNVKKRLPGGELAFERAVNPITVRDLFTMSA 124 T A + L ++GAF L D LS ++ +++M V K E + +PI + L + SA Sbjct: 75 TSVALMSLYDEGAFELTDPLSKFISSFSDMTVLKPDAQSAKDIEMSSSPIRMNHLLSHSA 134 Query: 125 GFSYDLELP-SIKEAVSRTGG-------KMPTRAIAEALAKEPLQFEPGTRWNYSLCHDV 176 G SY P SI + + T G M + L+++PL +EPG+ W YS DV Sbjct: 135 GLSYGFIEPNSIIDRIYNTSGIDALGQSSMDLEELCGLLSQQPLAYEPGSSWRYSFATDV 194 Query: 177 LAALVEAVDGRRFGTYIREEITGPLGMTDTGFDLPDGKRSRLAPQYEYSDELGKPVRKD- 235 A LVE + G+ F ++RE I PL M DTGF +P+ K RL Y D L P++ Sbjct: 195 CARLVEVISGKPFDVFLRERIFDPLNMKDTGFWVPEAKMDRLISIYAPVD-LFDPMKPGL 253 Query: 236 -------GNGFRLGTEYESGGAGLLSTVTDYAQFLNTLTNLGTSPDGVRILSPASVELMR 288 + ++ SGG GL+STV DY FL + + G + +GVRIL P ++ELMR Sbjct: 254 VKAEDLLSGPYSSKPKFLSGGGGLVSTVADYLSFLKMIVS-GGAHNGVRILMPETLELMR 312 Query: 289 TEQLTESMRGDFSWEQLKGYSYGLGVRTHISQARSGSLSPLGEFGWSGAAGCLAVIDPAS 348 T QL + + F + G +GLG S L E+ W G AG + + P Sbjct: 313 TNQLAQDVGVSFPMWSMPGTVFGLGFALKQSLGEDEPGGALNEYHWGGMAGTHSWMSPTQ 372 Query: 349 QLT-VMYAQHMLNNQEPFVH 367 +T Q M PF H Sbjct: 373 NITGFCLTQRMPGFWHPFSH 392 >gb|EAI29505.1| unknown [environmental sequence] Length = 400 Score = 185 bits (470), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 180/363 (49%), Gaps = 13/363 (3%) Query: 25 LVMHRNEPVYRYRNGYASLEEKTPIDDGRIINLYSLTKIMTCTAALQLLEKGAFLLNDRL 84 LV + E Y G E K P+ + I +YS++K +T A +QLLEK F L+D + Sbjct: 39 LVSRKGEVAYLDSLGMMDRENKKPMQEDTIFRIYSMSKAITSIAIMQLLEKSKFRLDDPV 98 Query: 85 SDYLPEYTEMNVKKRLPGGELAFERAVNPITVRDLFTMSAGFSYDLELPSIKEAVSRTGG 144 Y+P + + V + + +T+RDL + +G +YD + +A R Sbjct: 99 YWYIPSWKNLRVYESGIYPNFLTSKPKRHMTIRDLLSHMSGLTYDFMYRTNVDAAYRKTK 158 Query: 145 KMPTRAIAE---ALAKEPLQFEPGTRWNYSLCHDVLAALVEAVDGRRFGTYIREEITGPL 201 + + E L+ PL+F PG +WNYS+ DVL LVE G Y E I PL Sbjct: 159 VQQSETLQEFVDTLSTIPLEFSPGDKWNYSVSTDVLGHLVEVFSGMNLEDYFMEYIFKPL 218 Query: 202 GMTDTGFDLPDGKRSRLAPQYEYSDELGKPVRKDGNGFRLGTEYESGGAGLLSTVTDYAQ 261 M+DT F P+ K RLA YE++ + G P R F L T+ SGG GL ST++DY Sbjct: 219 EMSDTSFSCPEDKIDRLASLYEHNPK-GHP-RLLEIPF-LNTKMASGGGGLFSTMSDYHN 275 Query: 262 FLNTLTNLGTSPDGVRILSPASVELM------RTEQLTESMRGDFSWEQLKGYSYGLGVR 315 F + L + G G R++ ++ELM + LTE FS G +GLG Sbjct: 276 FCHMLLHQGEY-KGKRLIGRKTLELMTANHLPNNQDLTEMSESAFSETPYAGVGFGLGFS 334 Query: 316 THISQARSGSLSPLGEFGWSGAAGCLAVIDPASQLTVMYAQHMLNNQEPFVHPRLRNIVY 375 + A+S SLS +GEFGW GAA + I+P + V++ +L + V LR+++Y Sbjct: 335 VMLDPAKSQSLSDIGEFGWGGAASTVFFINPKEDMFVIFLTQLLPSSTYQVRRELRSLIY 394 Query: 376 ACL 378 + L Sbjct: 395 SAL 397 >ref|NP_421984.1| conserved hypothetical protein [Caulobacter crescentus CB15] pir||D87644 conserved hypothetical protein CC3190 [imported] - Caulobacter crescentus gb|AAK25152.1| conserved hypothetical protein [Caulobacter crescentus CB15] Length = 490 Score = 184 bits (468), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 121/392 (30%), Positives = 190/392 (48%), Gaps = 25/392 (6%) Query: 7 LSSFIDR--ITSWRIPWAEVLVMHRNEPVYRYRNGYASLEEKTPIDDGRIINLYSLTKIM 64 + SFI I + ++P A V R + + G A +E P+ + +YS+TK + Sbjct: 99 IDSFIQAKYIDTGKLPCALTQVWRRGQLAHTSVLGSADVERGKPLKADSLFRIYSMTKPI 158 Query: 65 TCTAALQLLEKGAFLLNDRLSDYLPEYTEMNVKKRLPGGELAFERAVNPITVRDLFTMSA 124 T A + L+E+G L+D + ++P + ++ V + G R P+ DL ++ Sbjct: 159 TSVAFMMLVEEGLASLDDPVHRFIPAWRDIGVFQAGVAGAFQTTRTKEPMRTIDLLRHTS 218 Query: 125 GFSYDLELPSIKEAVSRT---------GGKMPTRAIAEALAKEPLQFEPGTRWNYSLCHD 175 G +Y + + +A R GG + E L PL+F PG WNYS+ D Sbjct: 219 GLTYGFQQRTNVDAAYRKLKLDGVDSEGG---LKTFVETLGTVPLEFSPGEAWNYSVATD 275 Query: 176 VLAALVEAVDGRRFGTYIREEITGPLGMTDTGFDLPDGKRSRLAPQYEYSDELGKPVRKD 235 VL LVE + G F +++ I PL M DTGF +P+G+R R Y + GK V +D Sbjct: 276 VLGYLVEVISGMPFDVFLKTRIFDPLKMVDTGFFVPEGQRERFTACYALTPS-GKVVLQD 334 Query: 236 G---NGFRLGTEYESGGAGLLSTVTDYAQFLNTLTNLGTSPDGVRILSPASVELMRT--- 289 + + +SGG GL+ST DY +F L N G DGVR+LSP +++LM Sbjct: 335 DPEKSRYLSDPSVKSGGGGLVSTADDYMRFCRMLLN-GGELDGVRLLSPKTIKLMTMNHI 393 Query: 290 ---EQLTESMRGDFSWEQLKGYSYGLGVRTHISQARSGSLSPLGEFGWSGAAGCLAVIDP 346 ++L ++ + FS +G +GLG I QAR+ +L LGE+ W G A IDP Sbjct: 394 PGGQELVQASKSLFSEAVFEGLGFGLGFAMTIDQARTKNLGSLGEYFWGGMASTAFWIDP 453 Query: 347 ASQLTVMYAQHMLNNQEPFVHPRLRNIVYACL 378 L V++ ++ + + LR +VY+ Sbjct: 454 VEDLAVVFMTQLMPSTSYPIRRELRTLVYSSF 485 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 583,608,443 Number of extensions: 24969375 Number of successful extensions: 56596 Number of sequences better than 1.0e-05: 390 Number of HSP's gapped: 56032 Number of HSP's successfully gapped: 394 Length of query: 378 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 251 Effective length of database: 412,420,005 Effective search space: 103517421255 Effective search space used: 103517421255 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)