BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0532.0010.p
         (63 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00183639.1| hypothetical protein Exigu096401 [Exiguobacte...   105   4e-22
ref|NP_831330.1| Transposase [Bacillus cereus ATCC 14579] >gi|30...   103   2e-21
ref|NP_830417.1| Transposase [Bacillus cereus ATCC 14579] >gi|29...   103   2e-21
ref|NP_832108.1| Transposase [Bacillus cereus ATCC 14579] >gi|29...    94   1e-18
ref|NP_783745.1| transposase [Clostridium tetani] >gi|28208751|g...    80   2e-14

>ref|ZP_00183639.1| hypothetical protein Exigu096401 [Exiguobacterium sp. 255-15]
          Length = 248

 Score =  105 bits (261), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/63 (74%), Positives = 50/63 (79%)

Query: 1   MAGIKVEYVNPAYTSQKCPSCSTLNKAIDRKYSCPCGFHTHRDKVGAMNIIHAPVIGGNS 60
           + GIKVEYVNPAYTSQ CPSC   NKA DR Y CPCGF  HRD VGAMNI +APV+ GNS
Sbjct: 186 LEGIKVEYVNPAYTSQTCPSCGKRNKAKDRTYFCPCGFKKHRDLVGAMNIRYAPVVDGNS 245

Query: 61  QSA 63
           QSA
Sbjct: 246 QSA 248


>ref|NP_831330.1| Transposase [Bacillus cereus ATCC 14579]
 ref|NP_832373.1| Transposase [Bacillus cereus ATCC 14579]
 ref|NP_834858.1| Transposase [Bacillus cereus ATCC 14579]
 gb|AAP08531.1| Transposase [Bacillus cereus ATCC 14579]
 gb|AAP09574.1| Transposase [Bacillus cereus ATCC 14579]
 gb|AAP12059.1| Transposase [Bacillus cereus ATCC 14579]
          Length = 359

 Score =  103 bits (256), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/63 (74%), Positives = 49/63 (77%)

Query: 1   MAGIKVEYVNPAYTSQKCPSCSTLNKAIDRKYSCPCGFHTHRDKVGAMNIIHAPVIGGNS 60
           + GIKVEYVNPAYTSQ CP CS  NKA DRKY C CGF  HRD VGAMNI +A VI GNS
Sbjct: 297 LVGIKVEYVNPAYTSQTCPKCSEKNKAPDRKYKCRCGFEKHRDIVGAMNIRYATVIDGNS 356

Query: 61  QSA 63
           QSA
Sbjct: 357 QSA 359


>ref|NP_830417.1| Transposase [Bacillus cereus ATCC 14579]
 gb|AAP07618.1| Transposase [Bacillus cereus ATCC 14579]
          Length = 359

 Score =  103 bits (256), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/63 (74%), Positives = 49/63 (77%)

Query: 1   MAGIKVEYVNPAYTSQKCPSCSTLNKAIDRKYSCPCGFHTHRDKVGAMNIIHAPVIGGNS 60
           + GIKVEYVNPAYTSQ CP CS  NKA DRKY C CGF  HRD VGAMNI +A VI GNS
Sbjct: 297 LVGIKVEYVNPAYTSQTCPKCSEKNKAPDRKYKCRCGFEKHRDIVGAMNIRYATVIDGNS 356

Query: 61  QSA 63
           QSA
Sbjct: 357 QSA 359


>ref|NP_832108.1| Transposase [Bacillus cereus ATCC 14579]
 gb|AAP09309.1| Transposase [Bacillus cereus ATCC 14579]
          Length = 359

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/63 (69%), Positives = 45/63 (71%)

Query: 1   MAGIKVEYVNPAYTSQKCPSCSTLNKAIDRKYSCPCGFHTHRDKVGAMNIIHAPVIGGNS 60
           + GIKVEYVNPAYTSQ CP CS  NKA  RK  C CGF  HRD VGAMNI  A VI G S
Sbjct: 297 LVGIKVEYVNPAYTSQTCPKCSEKNKAPARKSKCRCGFEKHRDSVGAMNIRTATVINGTS 356

Query: 61  QSA 63
           QSA
Sbjct: 357 QSA 359


>ref|NP_783745.1| transposase [Clostridium tetani]
 gb|AAO37433.1| transposase [Clostridium tetani]
          Length = 379

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/63 (55%), Positives = 43/63 (68%)

Query: 1   MAGIKVEYVNPAYTSQKCPSCSTLNKAIDRKYSCPCGFHTHRDKVGAMNIIHAPVIGGNS 60
           + GIK+EYVNP  TS++CP C  LN A DRKY C CG+  HRD    +NII+A V+ GNS
Sbjct: 317 LEGIKIEYVNPCNTSKQCPICGKLNTAKDRKYQCSCGYKAHRDLNACINIINATVVDGNS 376

Query: 61  QSA 63
             A
Sbjct: 377 LQA 379


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.132    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 93,238,487
Number of extensions: 2642001
Number of successful extensions: 5579
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 5625
Number of HSP's successfully gapped: 12
Length of query: 63
Length of database: 757,237,578
Length adjustment: 35
Effective length of query: 28
Effective length of database: 662,209,113
Effective search space: 18541855164
Effective search space used: 18541855164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)