BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0531.0017.p (143 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_693859.1| hypothetical protein OB2937 [Oceanobacillus ihe... 146 1e-34 ref|NP_469929.1| lin0586 [Listeria innocua] >gi|16802620|ref|NP_... 123 1e-27 ref|NP_814929.1| membrane protein, putative [Enterococcus faecal... 112 4e-24 ref|NP_371268.1| conserved hypothetical protein [Staphylococcus ... 108 5e-23 ref|NP_764081.1| conserved hypothetical protein [Staphylococcus ... 102 2e-21 >ref|NP_693859.1| hypothetical protein OB2937 [Oceanobacillus iheyensis HTE831] dbj|BAC14893.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 145 Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 73/138 (52%), Positives = 94/138 (68%), Gaps = 1/138 (0%) Query: 1 MILQLITSFIAAATFCILFNAPVRALVQCGFAGMVGWMLYLQLDEK-WDXXXXXXXXXXX 59 MI Q++ SFIAAA F ILFNAP AL+QCG GM+GW+LY L ++ D Sbjct: 1 MITQIVMSFIAAAGFGILFNAPRNALIQCGTVGMLGWILYYSLVQQGMDVVPATTFAAML 60 Query: 60 XXXISQFFARSFKMPVIIFSVGGIIPLVPGGLAYDAMRKFVENDNNLAIQFAVQALLLSG 119 +S AR F+ P+I+F+V GIIPLVPGG+AY+AMR FVEND N AIQ + Q +LL+G Sbjct: 61 VAILSHLCARFFQKPIIVFTVSGIIPLVPGGIAYNAMRHFVENDYNTAIQLSTQVMLLAG 120 Query: 120 AIATGLVLSEVLGQMFRR 137 IA GL+ SEVL Q+ ++ Sbjct: 121 GIAIGLMFSEVLNQILKK 138 >ref|NP_469929.1| lin0586 [Listeria innocua] ref|NP_464105.1| lmo0577 [Listeria monocytogenes EGD-e] pir||AB1147 hypothetical protein lmo0577 [imported] - Listeria monocytogenes (strain EGD-e) pir||AB1506 hypothetical protein lin0586 [imported] - Listeria innocua (strain Clip11262) emb|CAC98656.1| lmo0577 [Listeria monocytogenes] emb|CAC95818.1| lin0586 [Listeria innocua] Length = 152 Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 66/145 (45%), Positives = 85/145 (58%), Gaps = 5/145 (3%) Query: 1 MILQLITSFIAAATFCILFNAPVRALVQCGFAGMVGWMLY---LQLDEKWDXXXXXXXXX 57 +I+QL+ S++A TF I+ N P RAL CG G GWM Y +Q+D Sbjct: 7 IIIQLVLSYVATVTFAIITNVPKRALNACGITGTFGWMAYWTLMQMDS--GTGASSLAGA 64 Query: 58 XXXXXISQFFARSFKMPVIIFSVGGIIPLVPGGLAYDAMRKFVENDNNLAIQFAVQALLL 117 +S FFA+ KMP+ IF+V GI+PLVPGGLAY A+R FV D AI F+VQ ++ Sbjct: 65 FVVAILSHFFAKHKKMPITIFNVPGIVPLVPGGLAYQAVRNFVLGDYTEAIGFSVQVTVV 124 Query: 118 SGAIATGLVLSEVLGQMFRRKNGRS 142 +GAIA GL+LSEV R GR Sbjct: 125 AGAIAAGLMLSEVFNHSIRAFRGRK 149 >ref|NP_814929.1| membrane protein, putative [Enterococcus faecalis V583] gb|AAO80999.1| membrane protein, putative [Enterococcus faecalis V583] Length = 163 Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 60/138 (43%), Positives = 82/138 (59%), Gaps = 2/138 (1%) Query: 1 MILQLITSFIAAATFCILFNAPVRALVQCGFAGMVGWMLYLQLDEKW--DXXXXXXXXXX 58 +++Q I SF+A+A F I+ N P R+LV CG G V WMLY + E + + Sbjct: 5 VLVQFIFSFLASAAFAIIINVPRRSLVACGLTGSVSWMLYWVIVEVFSGNAALGSLIGAV 64 Query: 59 XXXXISQFFARSFKMPVIIFSVGGIIPLVPGGLAYDAMRKFVENDNNLAIQFAVQALLLS 118 +S F++ KMPV IF++ GI+PLVPGGLAY A+R V + F VQA++++ Sbjct: 65 GVAAVSYLFSKILKMPVTIFNIPGIVPLVPGGLAYQAVRNIVIGNYEKGAYFTVQAVMIA 124 Query: 119 GAIATGLVLSEVLGQMFR 136 GAIA GLV SEV Q R Sbjct: 125 GAIALGLVASEVFNQNIR 142 >ref|NP_371268.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] ref|NP_373954.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] ref|NP_645523.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] pir||A89847 conserved hypothetical protein SA0699 [imported] - Staphylococcus aureus (strain N315) dbj|BAB41932.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] dbj|BAB56906.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] dbj|BAB94571.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] Length = 164 Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 57/137 (41%), Positives = 78/137 (56%), Gaps = 1/137 (0%) Query: 2 ILQLITSFIAAATFCILFNAPVRALVQCGFAGMVGWMLY-LQLDEKWDXXXXXXXXXXXX 60 + SFI+ F I+FNAP R LV CGF G + W +Y L +D ++ Sbjct: 5 LFHFTISFISTVLFSIIFNAPKRLLVACGFVGAIAWTIYQLTVDLEFGKVGASFLGSLIL 64 Query: 61 XXISQFFARSFKMPVIIFSVGGIIPLVPGGLAYDAMRKFVENDNNLAIQFAVQALLLSGA 120 +S +R +K PVIIF V GIIPLVPGG AY A R V ND A+ ++ L+SGA Sbjct: 65 GLMSHTMSRRYKRPVIIFIVPGIIPLVPGGAAYQATRFLVSNDYTSAVNTFLEVTLISGA 124 Query: 121 IATGLVLSEVLGQMFRR 137 IA G+++SE+L ++ R Sbjct: 125 IAFGILVSEILYYLYTR 141 >ref|NP_764081.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gb|AAO04123.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] Length = 164 Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 57/138 (41%), Positives = 78/138 (56%), Gaps = 3/138 (2%) Query: 2 ILQLITSFIAAATFCILFNAPVRALVQCGFAGMVGWMLYLQLDEKWDXXXXXXXXXXXXX 61 + I SFIA F I+FNAP + L+ CGF G V W +Y Q+ D Sbjct: 5 LFHFIISFIATVLFSIIFNAPKKLLLACGFVGAVAWTIY-QMTVGMDLGKVGASFLGSLI 63 Query: 62 X--ISQFFARSFKMPVIIFSVGGIIPLVPGGLAYDAMRKFVENDNNLAIQFAVQALLLSG 119 +S +R +K PVIIF V GIIPLVPGG AY+A R V ND A+ ++ L+SG Sbjct: 64 LGLMSHTMSRRYKQPVIIFIVPGIIPLVPGGAAYEATRFLVSNDYTNAVNTFLEVTLISG 123 Query: 120 AIATGLVLSEVLGQMFRR 137 AIA G+++SE++ ++ R Sbjct: 124 AIAFGILVSEIVYYIYSR 141 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.331 0.143 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 172,770,586 Number of extensions: 5440133 Number of successful extensions: 17341 Number of sequences better than 1.0e-05: 23 Number of HSP's gapped: 17339 Number of HSP's successfully gapped: 23 Length of query: 143 Length of database: 757,237,578 Length adjustment: 104 Effective length of query: 39 Effective length of database: 474,867,282 Effective search space: 18519823998 Effective search space used: 18519823998 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 120 (50.8 bits)