BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0531.0008.p
         (87 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA25846.1| cellobiose phosphorylase [Clostridium thermocellum]   134   7e-31
gb|AAL67138.1| cellobiose phosphorylase [Clostridium thermocellum]    134   7e-31
gb|AAC45510.1| cellobiose-phosphorylase [Clostridium stercorarium]    131   4e-30
ref|ZP_00067911.1| COG3459: Cellobiose phosphorylase [Microbulbi...   127   8e-29
dbj|BAA28631.1| Cellobiose Phosphorylase [Cellvibrio gilvus]          126   1e-28

>dbj|BAA25846.1| cellobiose phosphorylase [Clostridium thermocellum]
          Length = 807

 Score =  134 bits (337), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 59/76 (77%), Positives = 66/76 (86%)

Query: 1  MKFGTFDDTRKEYVINTPKTPYPWINYLGNEQFFGLISNTAGGYTFYRDARMRRLTRYRY 60
          MKFG FDD  KEYVI  P+TPYPWINYLG E FF LISNTAGGY FYRDAR+RR+TRYRY
Sbjct: 1  MKFGFFDDANKEYVITVPRTPYPWINYLGTENFFSLISNTAGGYCFYRDARLRRITRYRY 60

Query: 61 NNIPLDTGGRYYYLYD 76
          NN+P+D GGRY+Y+YD
Sbjct: 61 NNVPIDMGGRYFYIYD 76


>gb|AAL67138.1| cellobiose phosphorylase [Clostridium thermocellum]
          Length = 811

 Score =  134 bits (337), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 59/76 (77%), Positives = 66/76 (86%)

Query: 1  MKFGTFDDTRKEYVINTPKTPYPWINYLGNEQFFGLISNTAGGYTFYRDARMRRLTRYRY 60
          MKFG FDD  KEYVI  P+TPYPWINYLG E FF LISNTAGGY FYRDAR+RR+TRYRY
Sbjct: 1  MKFGFFDDANKEYVITVPRTPYPWINYLGTENFFSLISNTAGGYCFYRDARLRRITRYRY 60

Query: 61 NNIPLDTGGRYYYLYD 76
          NN+P+D GGRY+Y+YD
Sbjct: 61 NNVPIDMGGRYFYIYD 76


>gb|AAC45510.1| cellobiose-phosphorylase [Clostridium stercorarium]
          Length = 811

 Score =  131 bits (330), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 57/76 (75%), Positives = 67/76 (88%)

Query: 1  MKFGTFDDTRKEYVINTPKTPYPWINYLGNEQFFGLISNTAGGYTFYRDARMRRLTRYRY 60
          MKFG FDD  +EYVI TP TPYPWINYLG + FF LISNT+GGY FYRDAR+RR+TRYRY
Sbjct: 1  MKFGYFDDVNREYVITTPATPYPWINYLGCQDFFSLISNTSGGYCFYRDARLRRITRYRY 60

Query: 61 NNIPLDTGGRYYYLYD 76
          NN+P+D+GGRY+Y+YD
Sbjct: 61 NNVPIDSGGRYFYIYD 76


>ref|ZP_00067911.1| COG3459: Cellobiose phosphorylase [Microbulbifer degradans 2-40]
          Length = 811

 Score =  127 bits (319), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 55/76 (72%), Positives = 65/76 (85%)

Query: 1  MKFGTFDDTRKEYVINTPKTPYPWINYLGNEQFFGLISNTAGGYTFYRDARMRRLTRYRY 60
          MKFG FDD  +EYVI  PKTPYPWINYLGNE FF L+SNT GGY+FY+DA+ RRLTRYRY
Sbjct: 1  MKFGHFDDKAREYVITDPKTPYPWINYLGNEDFFSLVSNTGGGYSFYKDAKFRRLTRYRY 60

Query: 61 NNIPLDTGGRYYYLYD 76
          NN+P+D GG+Y+Y+ D
Sbjct: 61 NNVPVDNGGKYFYIND 76


>dbj|BAA28631.1| Cellobiose Phosphorylase [Cellvibrio gilvus]
          Length = 822

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/76 (73%), Positives = 65/76 (85%)

Query: 1  MKFGTFDDTRKEYVINTPKTPYPWINYLGNEQFFGLISNTAGGYTFYRDARMRRLTRYRY 60
          M++G FDD  +EYVI TP TPYPWINYLG+EQFF L+S+ AGGY+FYRDA+MRRLTRYRY
Sbjct: 1  MRYGHFDDAAREYVITTPHTPYPWINYLGSEQFFSLLSHQAGGYSFYRDAKMRRLTRYRY 60

Query: 61 NNIPLDTGGRYYYLYD 76
          NNIP D GGRY Y+ D
Sbjct: 61 NNIPADAGGRYLYVND 76


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.323    0.146    0.470 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 160,215,022
Number of extensions: 6132301
Number of successful extensions: 9136
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 9143
Number of HSP's successfully gapped: 20
Length of query: 87
Length of database: 757,237,578
Length adjustment: 56
Effective length of query: 31
Effective length of database: 605,192,034
Effective search space: 18760953054
Effective search space used: 18760953054
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)