BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0530.0031.p
         (151 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_396302.1| AGR_pAT_535p [Agrobacterium tumefaciens] >gi|17...    72   5e-12
emb|CAE46779.1| transposase [Yersinia enterocolitica]                  71   1e-11
ref|NP_284928.1| transposase [Deinococcus radiodurans]                 70   2e-11
gb|EAG59873.1| unknown [environmental sequence]                        68   8e-11
ref|NP_638056.1| ISxac3 transposase [Xanthomonas campestris pv. ...    67   2e-10

>ref|NP_396302.1| AGR_pAT_535p [Agrobacterium tumefaciens]
 ref|NP_535742.1| transposase [Agrobacterium tumefaciens str. C58 (U. Washington)]
 pir||AD3205 transposase tnp [imported] - Agrobacterium tumefaciens  (strain
           C58, Dupont) plasmid AT
 gb|AAK90743.1| AGR_pAT_535p [Agrobacterium tumefaciens str. C58 (Cereon)]
 gb|AAL46058.1| transposase [Agrobacterium tumefaciens str. C58 (U. Washington)]
          Length = 286

 Score = 71.6 bits (174), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 49/79 (62%)

Query: 68  LKFQFIEEHRSVFRIEKMCSVLGVSRSGYYKWRATPPSERKKHRERLVQRIEYHFHDNGE 127
           +KF FI +HRS++ +  +C  LGVSRSG++ W    PSE  +H E L++RI+  F  +  
Sbjct: 1   MKFAFIAKHRSIWPVAWLCEALGVSRSGFHAWFNRSPSEHARHDEVLLERIKQSFQSSDR 60

Query: 128 IYGSPKITKKLQQEGFTVG 146
            YG+ ++   + +EG + G
Sbjct: 61  TYGARRVWHDVLEEGLSCG 79


>emb|CAE46779.1| transposase [Yersinia enterocolitica]
          Length = 236

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 55/96 (57%)

Query: 56  KKGNAHLQQRPGLKFQFIEEHRSVFRIEKMCSVLGVSRSGYYKWRATPPSERKKHRERLV 115
           +KG A L +   LK++FI EHR+V+ +  MC VL V+R+G+Y W   P S R K  +RL+
Sbjct: 75  EKGRAVLCKGARLKYRFINEHRTVWGVMTMCRVLNVARAGFYAWLHDPASARDKDSQRLL 134

Query: 116 QRIEYHFHDNGEIYGSPKITKKLQQEGFTVGEKTVG 151
             I   +  +G +YG  ++   L + G   G+  VG
Sbjct: 135 TLIRDSYSLSGGVYGYRRVHGDLNEIGKICGKNRVG 170


>ref|NP_284928.1| transposase [Deinococcus radiodurans]
          Length = 233

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 48/83 (57%)

Query: 60  AHLQQRPGLKFQFIEEHRSVFRIEKMCSVLGVSRSGYYKWRATPPSERKKHRERLVQRIE 119
           A L QR  L+F FI  H   FR++ MC +L V+ SG+  WR  P S RK H ERL   IE
Sbjct: 5   ALLCQRKSLRFAFIAAHLDEFRLDIMCRILQVTPSGFRNWRRRPYSTRKTHDERLKLLIE 64

Query: 120 YHFHDNGEIYGSPKITKKLQQEG 142
              H +   YG+P+I K+L  +G
Sbjct: 65  DIDHQHKGRYGAPRIQKQLAADG 87


>gb|EAG59873.1| unknown [environmental sequence]
          Length = 272

 Score = 67.8 bits (164), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 45/82 (54%)

Query: 69  KFQFIEEHRSVFRIEKMCSVLGVSRSGYYKWRATPPSERKKHRERLVQRIEYHFHDNGEI 128
           KF F++EHR V+ +  MC+ LG+S SGYY WR  P S R      L + I     ++   
Sbjct: 3   KFGFVDEHRHVWPVRMMCAALGLSASGYYAWRGRPESPRSVANRALTEDIRLIHAESSGC 62

Query: 129 YGSPKITKKLQQEGFTVGEKTV 150
           YGSP++   L++ G  +G   V
Sbjct: 63  YGSPRVHATLRRHGRRIGRSRV 84


>ref|NP_638056.1| ISxac3 transposase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 ref|NP_638842.1| ISxac3 transposase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gb|AAM41980.1| ISxac3 transposase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gb|AAM42766.1| ISxac3 transposase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
          Length = 284

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 44/70 (62%)

Query: 73  IEEHRSVFRIEKMCSVLGVSRSGYYKWRATPPSERKKHRERLVQRIEYHFHDNGEIYGSP 132
           ++ H   FR+  MC VL V+RSGYY W  +P SER K  +RL+  I++H+  +G +YG  
Sbjct: 1   MQAHCGEFRVCAMCRVLRVNRSGYYAWLCSPNSERAKEDDRLLGLIKHHWLASGSVYGHR 60

Query: 133 KITKKLQQEG 142
           KIT  L+  G
Sbjct: 61  KITTDLRDLG 70


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 238,859,817
Number of extensions: 9425902
Number of successful extensions: 20432
Number of sequences better than 1.0e-05: 101
Number of HSP's gapped: 20468
Number of HSP's successfully gapped: 101
Length of query: 151
Length of database: 757,237,578
Length adjustment: 110
Effective length of query: 41
Effective length of database: 458,576,688
Effective search space: 18801644208
Effective search space used: 18801644208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)