BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0530.0029.p (328 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_693373.1| oligopeptide ABC transporter ATP-binding protei... 417 e-115 ref|NP_969032.1| oligopeptide ABC transporter, ATP-binding prote... 406 e-112 ref|NP_622281.1| ABC-type dipeptide/oligopeptide/nickel transpor... 400 e-110 ref|ZP_00021089.1| hypothetical protein [Chloroflexus aurantiacus] 400 e-110 ref|NP_244512.1| oligopeptide ABC transporter (ATP-binding prote... 397 e-109 >ref|NP_693373.1| oligopeptide ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC14408.1| oligopeptide ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] Length = 340 Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust. Identities = 196/321 (61%), Positives = 253/321 (78%) Query: 8 LLEVRELKKHYTSKSGLLSRKKPVVKAVDGISLNIRKGEILGLVGESGCGKSTLGRSILR 67 LLEVR LKK++ K G+L R VKAVD +S + GEILG+VGESGCGKST G++ILR Sbjct: 8 LLEVRSLKKYFPVKGGVLGRSVGEVKAVDDVSFEVYPGEILGIVGESGCGKSTTGKAILR 67 Query: 68 LIEPTSGNIVFEGQDILAYGKEEKRMMRKELQIIFQDSGAALNPRMTVGEIIGAPLDIYG 127 LIEPT G ++F+G+DI E+ R++RK++QIIFQD A+LNPR TV +II PL I+ Sbjct: 68 LIEPTEGEVIFQGKDITKLNAEQMRLLRKDMQIIFQDPYASLNPRHTVEKIINEPLMIHT 127 Query: 128 LAQGEAKERRINELLELVGLNKDYVNRFPHEFSGGQKQRIGIARALAVEPKLIVCDEPVS 187 A+ + +RI ELLE+VGL+ + +R+PH+FSGGQ+QRIGIARALA PKLI+CDEPVS Sbjct: 128 DAKKAERRKRIKELLEVVGLSPYHASRYPHQFSGGQRQRIGIARALANNPKLIICDEPVS 187 Query: 188 ALDVSVRAQVLNLMKELKEKLGLTYLFISHDLSVVHHLCDRVAVMYLGKIVEITDRNELY 247 ALDVSV++QVLNLM++L+++ LTY+FI+HDLSVV H+ DRV VMYLGK+VEI +++LY Sbjct: 188 ALDVSVQSQVLNLMEKLRDEFQLTYIFIAHDLSVVKHISDRVGVMYLGKMVEIAPKDQLY 247 Query: 248 GNPLHPYTKALLSAIPNPNPEISRERIVLEGDVPSPSNPPPGCSFHTRCPYRMDKCSVEV 307 N HPYT+ALLSA+P+P+P++ RERI+LEGDVPSP +PP GC FHTRCP MD C E+ Sbjct: 248 DNAKHPYTQALLSAVPDPDPDVQRERIILEGDVPSPQDPPSGCPFHTRCPMAMDICRQEL 307 Query: 308 PILLQTQGNHSVSCHLYNDEH 328 P L + NH V+CHLY+DE Sbjct: 308 PQFLPVEDNHVVACHLYSDEQ 328 >ref|NP_969032.1| oligopeptide ABC transporter, ATP-binding protein [Bdellovibrio bacteriovorus HD100] emb|CAE80025.1| oligopeptide ABC transporter, ATP-binding protein [Bdellovibrio bacteriovorus] Length = 329 Score = 406 bits (1043), Expect = e-112, Method: Compositional matrix adjust. Identities = 194/316 (61%), Positives = 247/316 (78%), Gaps = 1/316 (0%) Query: 8 LLEVRELKKHYTSKSGLLSRKKPVVKAVDGISLNIRKGEILGLVGESGCGKSTLGRSILR 67 +LE + +KKH+ K GLL R+ VKAVD +SL +RKGE LGLVGESGCGKSTLGR+++R Sbjct: 7 ILEAKNIKKHFPIKKGLLLREVASVKAVDDVSLFVRKGETLGLVGESGCGKSTLGRTLIR 66 Query: 68 LIEPTSGNIVFEGQDILAYGKEEKRMMRKELQIIFQDSGAALNPRMTVGEIIGAPLDIYG 127 L EPT+GNI F+GQD L E R RK +Q+IFQD A+L+PRMTVG+II P+DI+ Sbjct: 67 LYEPTAGNINFDGQDFLKLKGEALRKKRKNMQMIFQDPYASLDPRMTVGQIIRQPMDIHN 126 Query: 128 LAQGEAKERRINELLELVGLNKDYVNRFPHEFSGGQKQRIGIARALAVEPKLIVCDEPVS 187 + E + +R+ EL+E+VGL K +VNR+PHEFSGGQ+QRI IARA+A+ P+LI+CDEPVS Sbjct: 127 VGTQEERTQRVLELIEVVGLRKGHVNRYPHEFSGGQRQRISIARAIALNPELIICDEPVS 186 Query: 188 ALDVSVRAQVLNLMKELKEKLGLTYLFISHDLSVVHHLCDRVAVMYLGKIVEITDRNELY 247 ALDVS++AQ+LNL+K+L+EKL LTY+FISHDLSV+ H CDR+AVMYLGKIVEI R+EL+ Sbjct: 187 ALDVSIQAQILNLLKDLQEKLKLTYVFISHDLSVIEHTCDRIAVMYLGKIVEIAPRDELF 246 Query: 248 GNPLHPYTKALLSAIPNPNPEISRERIVLEGDVPSPSNPPPGCSFHTRCPYRMDKCSVEV 307 NP HPYT+AL+ AIP + + L G+VPSP NPP GCSFHTRCPY+MD CS + Sbjct: 247 KNPQHPYTQALIGAIPRVGHGKKKMKKSLGGEVPSPINPPSGCSFHTRCPYKMDICSQKT 306 Query: 308 PILLQTQGNHSVSCHL 323 P+ L+ Q NH +C L Sbjct: 307 PV-LEGQANHQKACWL 321 >ref|NP_622281.1| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Thermoanaerobacter tengcongensis] gb|AAM23885.1| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Thermoanaerobacter tengcongensis] Length = 320 Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust. Identities = 192/323 (59%), Positives = 246/323 (76%), Gaps = 9/323 (2%) Query: 5 SPYLLEVRELKKHYTSKSGLLSRKKPVVKAVDGISLNIRKGEILGLVGESGCGKSTLGRS 64 S LLEV+ LKK++ K G+L KAVD +S I+KGE LGLVGESGCGKST GR+ Sbjct: 4 SKVLLEVKNLKKYFYVKGGVL-------KAVDDVSFAIKKGETLGLVGESGCGKSTTGRT 56 Query: 65 ILRLIEPTSGNIVFEGQDILAYGKEEKRMMRKELQIIFQDSGAALNPRMTVGEIIGAPLD 124 I+ L EPT+G IVF+G+ + E ++ + +Q+IFQD A+LNPRMTVG+IIG +D Sbjct: 57 IIGLYEPTAGEIVFDGEKVDHLSYEGRKKFARRVQMIFQDPYASLNPRMTVGDIIGEGID 116 Query: 125 IYGLAQGEAKERRINELLELVGLNKDYVNRFPHEFSGGQKQRIGIARALAVEPKLIVCDE 184 I+GL G+ + RI ELLE+VGLN+++ NRFPHEFSGGQ+QRIGIARA+A+EP+ I+ DE Sbjct: 117 IHGLYTGKERMERIYELLEMVGLNREHANRFPHEFSGGQRQRIGIARAMAIEPEFIIADE 176 Query: 185 PVSALDVSVRAQVLNLMKELKEKLGLTYLFISHDLSVVHHLCDRVAVMYLGKIVEITDRN 244 P+SALDVS++AQ++NL+ L+E+ GLTYLFI+HDLS+V H+ D VAVMYLG IVE+T Sbjct: 177 PISALDVSIQAQIVNLLMNLQEEKGLTYLFIAHDLSMVRHISDNVAVMYLGTIVEMTSSA 236 Query: 245 ELYGNPLHPYTKALLSAIPNPNPEIS--RERIVLEGDVPSPSNPPPGCSFHTRCPYRMDK 302 ELY NPLHPYT+ALLSA+P P+P++ RERI+LEGDVPSP NPP GC F TRC Y MD Sbjct: 237 ELYANPLHPYTQALLSAVPIPDPKVQKKRERIILEGDVPSPINPPSGCKFRTRCKYAMDI 296 Query: 303 CSVEVPILLQTQGNHSVSCHLYN 325 C + P L + H V+CHL+N Sbjct: 297 CKEQAPPLKEVASGHFVACHLFN 319 >ref|ZP_00021089.1| hypothetical protein [Chloroflexus aurantiacus] Length = 371 Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust. Identities = 189/318 (59%), Positives = 245/318 (77%), Gaps = 3/318 (0%) Query: 7 YLLEVRELKKHYTSKSGLL-SRKKPVVKAVDGISLNIRKGEILGLVGESGCGKSTLGRSI 65 YL+E+++L+ ++ G++ R+ VKAVDG+S +I++GE LGLVGESGCGKST GR+I Sbjct: 15 YLIEIKDLRMYFPVTRGIIFQRRVGTVKAVDGVSFSIKRGETLGLVGESGCGKSTTGRAI 74 Query: 66 LRLIEPTSGNIVFEGQDILAYGKEEKRMMRKELQIIFQDSGAALNPRMTVGEIIGAPLDI 125 L+L PTSG ++FEG D+ R MR+ +Q+IFQD A+LNPRMTVG+II P+ + Sbjct: 75 LQLYRPTSGQVLFEGTDLTKLKGNALRQMRRRVQMIFQDPYASLNPRMTVGDIIAEPIRV 134 Query: 126 YGLAQGEAKERRINELLELVGLNKDYVNRFPHEFSGGQKQRIGIARALAVEPKLIVCDEP 185 + L +G A R+ ELL LVGLN + NR+PHEFSGGQ+QRIGIARALAVEP +VCDEP Sbjct: 135 HKLREGRAVRERVEELLHLVGLNPAFANRYPHEFSGGQRQRIGIARALAVEPDFVVCDEP 194 Query: 186 VSALDVSVRAQVLNLMKELKEKLGLTYLFISHDLSVVHHLCDRVAVMYLGKIVEITDRNE 245 VSALDVS++AQV+NL++EL++KLGLTYLFI+HDLSVV+H+ DRVAVMYLGK+VE+ + + Sbjct: 195 VSALDVSIQAQVVNLLEELQDKLGLTYLFIAHDLSVVNHISDRVAVMYLGKVVELAEGPK 254 Query: 246 LYGNPLHPYTKALLSAIPNPNPEI--SRERIVLEGDVPSPSNPPPGCSFHTRCPYRMDKC 303 LY PLHPYT+ALLSA+P P+P++ R RI+LEGDVPSP NPPPGC FHTRCP + KC Sbjct: 255 LYSMPLHPYTQALLSAVPIPDPKVEKQRRRIILEGDVPSPLNPPPGCHFHTRCPIAIQKC 314 Query: 304 SVEVPILLQTQGNHSVSC 321 E P + H +C Sbjct: 315 KEEEPPFVDYGNGHFAAC 332 >ref|NP_244512.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||E84105 oligopeptide ABC transporter (ATP-binding protein) BH3645 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07364.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 322 Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust. Identities = 185/324 (57%), Positives = 249/324 (76%), Gaps = 3/324 (0%) Query: 1 MGNPSPYLLEVRELKKHYTSKSGLLSRKKPVVKAVDGISLNIRKGEILGLVGESGCGKST 60 MG P LLEV+ L K + G SRK V+AVD +S ++ +GE+LG+VGESGCGKST Sbjct: 1 MGKP---LLEVKNLTKSFDINGGFFSRKVGEVRAVDNLSFSVYEGEVLGIVGESGCGKST 57 Query: 61 LGRSILRLIEPTSGNIVFEGQDILAYGKEEKRMMRKELQIIFQDSGAALNPRMTVGEIIG 120 G++ILRLIEP+SG + F G +I A + + R R+++QIIFQD A+LNPR T+ +II Sbjct: 58 TGKAILRLIEPSSGEVYFAGTEITALSEGDMRKRRRDMQIIFQDPYASLNPRHTIEKIIR 117 Query: 121 APLDIYGLAQGEAKERRINELLELVGLNKDYVNRFPHEFSGGQKQRIGIARALAVEPKLI 180 PL ++ + + + R+ ELLE VGL+ D+ R+PH+FSGGQ+QRIGIARALAV PKL+ Sbjct: 118 EPLIVHQIGTKKEQLERVEELLETVGLSSDHATRYPHQFSGGQRQRIGIARALAVHPKLV 177 Query: 181 VCDEPVSALDVSVRAQVLNLMKELKEKLGLTYLFISHDLSVVHHLCDRVAVMYLGKIVEI 240 +CDEPVSALDVSV++Q+LNLM +LKE LTY+FI+HDLSVV H+ DRVAVMYLG++VE+ Sbjct: 178 ICDEPVSALDVSVQSQILNLMADLKETFALTYIFIAHDLSVVKHISDRVAVMYLGRMVEM 237 Query: 241 TDRNELYGNPLHPYTKALLSAIPNPNPEISRERIVLEGDVPSPSNPPPGCSFHTRCPYRM 300 +++L+ NP HPYT+ALLSA+P P+P+ ++E+I+L+GDVPSPSNPP GC+FHTRCP M Sbjct: 238 ATKDQLFENPKHPYTRALLSAVPVPDPDAAKEKILLKGDVPSPSNPPEGCAFHTRCPDCM 297 Query: 301 DKCSVEVPILLQTQGNHSVSCHLY 324 D C ++ P L + + H V+CHLY Sbjct: 298 DVCKIKRPSLHEKEKGHYVACHLY 321 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 511,587,941 Number of extensions: 22500713 Number of successful extensions: 133934 Number of sequences better than 1.0e-05: 21222 Number of HSP's gapped: 109124 Number of HSP's successfully gapped: 22877 Length of query: 328 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 202 Effective length of database: 415,135,104 Effective search space: 83857291008 Effective search space used: 83857291008 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)