BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0530.0028.p (326 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_240894.1| oligopeptide ABC transporter (ATP-binding prote... 412 e-114 ref|NP_693991.1| oligopeptide ABC transporter ATP-binding protei... 395 e-109 ref|NP_658524.1| ABC_tran, ABC transporter [Bacillus anthracis A... 394 e-108 ref|ZP_00018216.1| hypothetical protein [Chloroflexus aurantiacus] 392 e-108 ref|NP_228311.1| oligopeptide ABC transporter, ATP-binding prote... 387 e-106 >ref|NP_240894.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||D83653 oligopeptide ABC transporter (ATP-binding protein) BH0028 [imported] - Bacillus halodurans (strain C-125) dbj|BAB03747.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 347 Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust. Identities = 204/323 (63%), Positives = 254/323 (78%), Gaps = 5/323 (1%) Query: 2 SDYLLEVKGLKTYFNHFNKQVPAVNGVDFVVRKGETLGIVGESGCGKSVTAMSILKLLAP 61 ++ +LEV+ L+T F +V AV+GV F V KG+TLGIVGESG GKS+T++SILKL+ Sbjct: 9 AETILEVRDLRTSFFTEAFEVKAVDGVTFSVPKGKTLGIVGESGSGKSITSLSILKLIQE 68 Query: 62 EAKIVDGQVLFKGKDLVGLNDRQMTRIRGNEISIIFQEPMTSLNPAYTVGYQIGEAIRTH 121 K+V G++ FKG++LV N+ M +IRGNEIS+IFQEPMTSLNP YTVG QI E+ R H Sbjct: 69 PGKVVGGEINFKGENLVTKNEAYMRKIRGNEISMIFQEPMTSLNPVYTVGQQISESFRIH 128 Query: 122 QKLDKKTTRSRAVEMLKLVGIPDPDKRVDEYPHELSGGMRQRVMIAMALSCNPELLIADE 181 +KL KK R+V+MLKLVGIP P+KRV +YPHELSGGMRQRVMIAMAL+CNPELLIADE Sbjct: 129 EKLGKKEALKRSVDMLKLVGIPSPEKRVHQYPHELSGGMRQRVMIAMALACNPELLIADE 188 Query: 182 PTTALDVTVQAQILELMKSLKDKFHTSIMMITHDLGVVAEMADYVIVMYAGTVVEYSDVK 241 PTTALDVT+QAQILELMK L+D+ SI+MITHDLGVVAE DYV VMY G VVEY+DVK Sbjct: 189 PTTALDVTIQAQILELMKDLQDRLGMSIIMITHDLGVVAETCDYVAVMYCGKVVEYADVK 248 Query: 242 SLYNKPLHPYTEGLMNSLPK--IDDPKDKLEAIPGSVPSLYDLPKGCSFWPRCPYAQEIC 299 +L+ P HPYT GL+NSLP+ ID ++L I G+VPS D+P+GC F PRCP+A +IC Sbjct: 249 TLFKNPRHPYTVGLLNSLPRHDIDLEDEELSVIKGNVPSPADMPEGCRFAPRCPFASDIC 308 Query: 300 KQEKPELYEVDQ--RKVRCFLYS 320 K+ P+L E D+ ++RC++YS Sbjct: 309 KERLPDL-ETDENGNQIRCWVYS 330 >ref|NP_693991.1| oligopeptide ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC15025.1| oligopeptide ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] Length = 347 Score = 395 bits (1015), Expect = e-109, Method: Compositional matrix adjust. Identities = 189/321 (58%), Positives = 251/321 (78%), Gaps = 4/321 (1%) Query: 3 DYLLEVKGLKTYFNHFNKQVPAVNGVDFVVRKGETLGIVGESGCGKSVTAMSILKLLAPE 62 D +LE+ L+T F + +V AV+GV F + +G+ LG+VGESG GKS+T++SIL+L+ Sbjct: 9 DNILEINELQTSFFTKDLEVKAVDGVSFSIPRGKVLGVVGESGSGKSITSLSILRLIEEP 68 Query: 63 AKIVDGQVLFKGKDLVGLNDRQMTRIRGNEISIIFQEPMTSLNPAYTVGYQIGEAIRTHQ 122 KI G++ FKG++L+ ++ QM +IRGNEIS+IFQEPMTSLNP +TVG QIGEA + HQ Sbjct: 69 GKIKGGEIKFKGENLLNKSESQMRKIRGNEISMIFQEPMTSLNPTFTVGQQIGEAYKIHQ 128 Query: 123 KLDKKTTRSRAVEMLKLVGIPDPDKRVDEYPHELSGGMRQRVMIAMALSCNPELLIADEP 182 L+KK + R++EMLKLVGIP P+KRVD+YPHELSGGMRQRVMIAMAL+CNP+LLIADEP Sbjct: 129 GLNKKEAKQRSIEMLKLVGIPSPEKRVDQYPHELSGGMRQRVMIAMALACNPDLLIADEP 188 Query: 183 TTALDVTVQAQILELMKSLKDKFHTSIMMITHDLGVVAEMADYVIVMYAGTVVEYSDVKS 242 TTALDVT+QAQIL+L+K L+++ +++ITHDLGVVAE DYV VMY G VVE++D KS Sbjct: 189 TTALDVTIQAQILDLIKDLQEQLDMGVLLITHDLGVVAETCDYVAVMYCGKVVEFTDKKS 248 Query: 243 LYNKPLHPYTEGLMNSLPKID-DPKDKLEAIPGSVPSLYDLPKGCSFWPRCPYAQEICKQ 301 L++ P HPYT GLM S+P+ D D + L I GSVPS ++PKGC F PRCP+A ++C + Sbjct: 249 LFSSPKHPYTVGLMQSIPQHDKDVEGDLSVIKGSVPSPAEMPKGCRFAPRCPFATDLCHE 308 Query: 302 EKPELYEVDQ--RKVRCFLYS 320 + P L E D+ ++RC++YS Sbjct: 309 KLPNL-ETDENGNQIRCWIYS 328 >ref|NP_658524.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_846943.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP28429.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 338 Score = 394 bits (1011), Expect = e-108, Method: Compositional matrix adjust. Identities = 189/318 (59%), Positives = 245/318 (77%), Gaps = 2/318 (0%) Query: 5 LLEVKGLKTYFNHFNKQVPAVNGVDFVVRKGETLGIVGESGCGKSVTAMSILKLLAPEA- 63 +L+VK LKT+F AV+G++F + KGETLGIVGESGCGKS+T++SI++L+ E+ Sbjct: 7 VLQVKDLKTHFFTDEGVSKAVDGLNFSISKGETLGIVGESGCGKSITSLSIMRLIDRESG 66 Query: 64 KIVDGQVLFKGKDLVGLNDRQMTRIRGNEISIIFQEPMTSLNPAYTVGYQIGEAIRTHQK 123 V+G +LFKGKDL+ N+ +M IRGN+IS+IFQEPMTSLNP Y+VG QI EAIR HQK Sbjct: 67 SKVEGNILFKGKDLLQQNESEMRAIRGNQISMIFQEPMTSLNPVYSVGEQIAEAIRIHQK 126 Query: 124 LDKKTTRSRAVEMLKLVGIPDPDKRVDEYPHELSGGMRQRVMIAMALSCNPELLIADEPT 183 L KK ++AV+MLKLVGIP P+KR + PHELSGGMRQR+MIAMAL+CNP+LLIADEPT Sbjct: 127 LSKKEAWNKAVDMLKLVGIPSPEKRAKQEPHELSGGMRQRIMIAMALACNPDLLIADEPT 186 Query: 184 TALDVTVQAQILELMKSLKDKFHTSIMMITHDLGVVAEMADYVIVMYAGTVVEYSDVKSL 243 TALDVT+QAQIL LMKSL+ + I+MITHDLGVV+E D V VMYAG +VEY+D++ + Sbjct: 187 TALDVTIQAQILSLMKSLQKQLGMGIIMITHDLGVVSETCDRVAVMYAGKIVEYADIEHI 246 Query: 244 YNKPLHPYTEGLMNSLPKIDDPKDKLEAIPGSVPSLYDLPKGCSFWPRCPYAQEICKQEK 303 + P HPYT GL+ SLP +D +++L+ IPGSVPS Y +P GC F R +A+E+C Sbjct: 247 FTSPKHPYTIGLLQSLPSLDTDQEELQTIPGSVPSPYHMPSGCRFADRYTHAKELCHNTL 306 Query: 304 PEL-YEVDQRKVRCFLYS 320 PEL D +VRC++++ Sbjct: 307 PELQLTQDGSEVRCWMFT 324 >ref|ZP_00018216.1| hypothetical protein [Chloroflexus aurantiacus] Length = 337 Score = 392 bits (1008), Expect = e-108, Method: Compositional matrix adjust. Identities = 183/315 (58%), Positives = 243/315 (77%) Query: 5 LLEVKGLKTYFNHFNKQVPAVNGVDFVVRKGETLGIVGESGCGKSVTAMSILKLLAPEAK 64 LL V+GLKTYF V AV+GVDF +R+GETLGIVGESG GKSVT++SIL+L++P + Sbjct: 22 LLRVEGLKTYFFTEEGVVQAVDGVDFTLRRGETLGIVGESGSGKSVTSLSILRLVSPPGR 81 Query: 65 IVDGQVLFKGKDLVGLNDRQMTRIRGNEISIIFQEPMTSLNPAYTVGYQIGEAIRTHQKL 124 IV+G+++F G DL+ L+ M +IRG+ I++IFQ+P T+LNP + +G QI E + HQ L Sbjct: 82 IVEGKIIFDGTDLLTLDAEAMRKIRGDRIAMIFQQPTTALNPVFRIGDQIIETLEIHQGL 141 Query: 125 DKKTTRSRAVEMLKLVGIPDPDKRVDEYPHELSGGMRQRVMIAMALSCNPELLIADEPTT 184 + R +E+L +VG+PDP +R+ +YPHELSGG QRVMIAMAL+CNPELLIADEPTT Sbjct: 142 KGEEAAKRCIELLSMVGLPDPQRRMRQYPHELSGGQCQRVMIAMALACNPELLIADEPTT 201 Query: 185 ALDVTVQAQILELMKSLKDKFHTSIMMITHDLGVVAEMADYVIVMYAGTVVEYSDVKSLY 244 ALDVT+QAQIL+LM+ L++K T+IM+ITHD+GV+AEMAD V+VMYAG VVEY+DV+SL+ Sbjct: 202 ALDVTIQAQILDLMRELREKIETAIMLITHDMGVIAEMADSVVVMYAGQVVEYADVQSLF 261 Query: 245 NKPLHPYTEGLMNSLPKIDDPKDKLEAIPGSVPSLYDLPKGCSFWPRCPYAQEICKQEKP 304 + P HPYT GL+NS+P + D +++LE IPG+VPSL + PKGC F RC + C Q P Sbjct: 262 SDPKHPYTRGLLNSMPVLGDTREELEVIPGTVPSLINPPKGCRFASRCSKRFDKCDQPPP 321 Query: 305 ELYEVDQRKVRCFLY 319 + R+VRC+LY Sbjct: 322 MVELGANRRVRCWLY 336 >ref|NP_228311.1| oligopeptide ABC transporter, ATP-binding protein [Thermotoga maritima] pir||D72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga maritima (strain MSB8) gb|AAD35586.1| oligopeptide ABC transporter, ATP-binding protein [Thermotoga maritima] Length = 327 Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust. Identities = 186/321 (57%), Positives = 249/321 (77%), Gaps = 2/321 (0%) Query: 8 VKGLKTYFNHFNKQVPAVNGVDFVVRKGETLGIVGESGCGKSVTAMSILKLLAPEAKIVD 67 ++ LKTYF + V AV+GV F VR+GETLGIVGESG GKSVT++SI++LL KIVD Sbjct: 1 MENLKTYFYTEDGVVKAVDGVSFEVREGETLGIVGESGSGKSVTSLSIMRLLDQNGKIVD 60 Query: 68 GQVLFKGKDLVGLNDRQMTRIRGNEISIIFQEPMTSLNPAYTVGYQIGEAIRTHQKLDKK 127 G+++FKG++L+ L++ +M +IRG EI++IFQEPM +LNP +T+G QI EAI HQ + +K Sbjct: 61 GKIIFKGRNLLELSENEMRKIRGKEIAMIFQEPMVALNPVFTIGDQIMEAIILHQNVSEK 120 Query: 128 TTRSRAVEMLKLVGIPDPDKRVDEYPHELSGGMRQRVMIAMALSCNPELLIADEPTTALD 187 R A+++L+ VGIP+P+KRVDEYPH+LSGGMRQR MIAMALSC P LLIADEPTTALD Sbjct: 121 EARKMAIDLLRKVGIPEPEKRVDEYPHQLSGGMRQRAMIAMALSCRPSLLIADEPTTALD 180 Query: 188 VTVQAQILELMKSLKDKFHTSIMMITHDLGVVAEMADYVIVMYAGTVVEYSDVKSLYNKP 247 VT+QAQILELMK L+ ++ +I++ITHD+GVVAEM+D V VMYAG VVEY DVK+++ +P Sbjct: 181 VTIQAQILELMKELQKEYGMAIILITHDMGVVAEMSDKVAVMYAGKVVEYGDVKTIFTEP 240 Query: 248 LHPYTEGLMNSLPKIDDPKDKLEAIPGSVPSLYDLPKGCSFWPRCPYAQE-ICKQEKPEL 306 HPYT L+ S+P+ID +++L++IPG+VP + P GC F PRC + ++ C E+PEL Sbjct: 241 KHPYTYALLESIPRIDVEQERLKSIPGNVPDPLNFPPGCKFHPRCEFFEKGKCDVEEPEL 300 Query: 307 YEVD-QRKVRCFLYSGKIERR 326 ++D KVRCF + E R Sbjct: 301 EDLDGNHKVRCFFWQKLDEMR 321 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 483,101,355 Number of extensions: 19909223 Number of successful extensions: 114276 Number of sequences better than 1.0e-05: 18385 Number of HSP's gapped: 96858 Number of HSP's successfully gapped: 19557 Length of query: 326 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 200 Effective length of database: 415,135,104 Effective search space: 83027020800 Effective search space used: 83027020800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)