BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0530.0027.p (473 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00186969.1| hypothetical protein Rxyl210001 [Rubrobacter ... 206 1e-51 ref|ZP_00017859.1| hypothetical protein [Chloroflexus aurantiacus] 205 2e-51 ref|NP_344058.1| Deacetylase, putative [Sulfolobus solfataricus]... 205 2e-51 gb|EAK20500.1| unknown [environmental sequence] 195 2e-48 ref|ZP_00063945.1| COG0624: Acetylornithine deacetylase/Succinyl... 193 7e-48 >ref|ZP_00186969.1| hypothetical protein Rxyl210001 [Rubrobacter xylanophilus DSM 9941] Length = 450 Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 144/440 (32%), Positives = 211/440 (47%), Gaps = 24/440 (5%) Query: 29 RLKSISATGEG---IRETAQVVKAMIEEVGGASEIIETPGHPIVYGKLDEGAQYTLLIYS 85 R+ S+SA +G RE A+ V +EE G + ++ET GHP+VY + EG + LL Y Sbjct: 23 RMPSVSAREDGGGAFRECAEWVLGKLEEAGARARLLETGGHPVVYAEAGEG-EGALLSYG 81 Query: 86 MYDVLPAEEPD-WISDPWAAEIHDFQDYGKCIIGRGAVNTKGPTAAFFNTIKAYKKIKGK 144 YDV P E + W SDP+ I G + RG + KG A ++ Y + G+ Sbjct: 82 HYDVQPPEPLELWESDPFEPAIR-----GDRLYARGVADDKGDVLARIQALRIYLREHGE 136 Query: 145 LPVNLVFLIEGEEELSSKSLQQFLVDNKDKFAECDAMFFPSFGEENRVASIFMGVKGIVS 204 LP L FLIEGEEE+ S SL F+ +N + ++ S +E IF G KG+ Sbjct: 137 LPFRLRFLIEGEEEVGSPSLGPFVRENAGLLSADACLWEGSIKDEAGRPVIFCGTKGLAY 196 Query: 205 FELKAKGGSWGGPKERGIHGAFAAWVGNPAWRLVKALSTMVGEDEKEILVEGFYDGILPL 264 EL+A+G S +H + NPAWRLV+AL T+ E EI ++GF + P Sbjct: 197 VELRARGPS------HDLHSMYGGIAPNPAWRLVQALRTIKNE-RGEITLDGFAELAEPP 249 Query: 265 AKEGXXXXXXXXXXXXXXQWKKAYAIDRFKWDLEGLDLWKKMLTVPTLNIDGIKGGYIGE 324 + E + A+ ++ L G + ++ML PT NI G+ GY G Sbjct: 250 SPE--DLEAISRIPFDDAALRTAWGVEELDRGLSGREALEEMLLRPTANIAGMHSGYTGP 307 Query: 325 GSKTLLPHETTVKMDIRLVPGMDPEKMLGKIRNHLDKHGYSDIEITEYGKAXXXXXXXXX 384 GSKT++P E VKMD RLV G P +++ +R HL + G DIE+ + Sbjct: 308 GSKTIVPSEAFVKMDFRLVAGQSPSRVVQLLREHLRRRGMEDIEVVDLHGLEPAKTPVNA 367 Query: 385 XXXXQTLKRMYELMGARPQIWPWNPGSAPYFLFGKILGLPYVTGG--MGHGSRQHSSNEY 442 + +L ++P GS P L LG+P + G SR HS NE Sbjct: 368 PIVRLAKETWSDLGRDDALVYPTIGGSGPTSLIATGLGIPTIMAGNVADSESRIHSPNES 427 Query: 443 CTVKGVLDFEKSMVYYLNLF 462 V+ D+ +++ Y++ LF Sbjct: 428 VRVE---DYLETVAYFVRLF 444 >ref|ZP_00017859.1| hypothetical protein [Chloroflexus aurantiacus] Length = 367 Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 195/371 (52%), Gaps = 19/371 (5%) Query: 6 MKDVFDYLEQHFEEDLKSTQEFMRLKSISATGEGIRETAQVVKAMIEEVGGASEIIETPG 65 M+ Y+E L + +R+ S++A GI ETA V+ + +G + +++ G Sbjct: 1 MERFAAYVESQRSRFLAELADIVRIPSVAAQNRGIDETASFVEQRLRRLGAETRLLQADG 60 Query: 66 -HPIVYGKLDEGAQYTLLIYSMYDVLPAEEPD-WISDPWAAEIHDFQDYGKCIIGRGAVN 123 +P+VY + G++ TLLIY YDV PAE + W S P+ D + YG RG + Sbjct: 61 GNPMVYATIGNGSR-TLLIYDHYDVQPAEPFELWQSPPFELTERDGKLYG-----RGVAD 114 Query: 124 TKGPTAAFFNTIKAYKKIKGKLPVNLVFLIEGEEELSSKSLQQFLVDNKDKFAECDAMFF 183 KG I+A+ +G+LP+ ++F +EGEEE+SS++L + D D + Sbjct: 115 NKGNLMLRIQAIEAWLATEGELPIRIIFAVEGEEEVSSRTLPAVCREYAD-LLRADGCLW 173 Query: 184 PSFGEE-NRVASIFMGVKGIVSFELKAKGGSWGGPKERGIHGAFAAWVGNPAWRLVKALS 242 + G + N + G KGI EL A+G S+ +H ++A +V NPAWRL AL+ Sbjct: 174 ETGGVDINERPVVTCGAKGIQYVELVARGASYD------LHSSYATFVPNPAWRLTWALN 227 Query: 243 TMVGEDEKEILVEGFYDGILPLAKEGXXXXXXXXXXXXXXQWKKAYAIDRFKWDLEGLDL 302 T+ G D + + + GFYD + P + + +D F L GLD Sbjct: 228 TLKGPDGR-VRIPGFYDRVRP--PSAADLAALTTIPTNDEELLADFGLDEFLDGLRGLDR 284 Query: 303 WKKMLTVPTLNIDGIKGGYIGEGSKTLLPHETTVKMDIRLVPGMDPEKMLGKIRNHLDKH 362 ++ L PT I G+ GY GEGSKT+LP+E K+D RLVP M+P ++L ++R HLD Sbjct: 285 LRRHLFEPTCTICGLVSGYTGEGSKTVLPNEARAKIDFRLVPDMEPAEVLHQLRRHLDAE 344 Query: 363 GYSDIEITEYG 373 G++DIEI + G Sbjct: 345 GFADIEIIDLG 355 >ref|NP_344058.1| Deacetylase, putative [Sulfolobus solfataricus] pir||A90449 deacetylase, probable [imported] - Sulfolobus solfataricus gb|AAK42848.1| Deacetylase, putative [Sulfolobus solfataricus] Length = 437 Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 146/453 (32%), Positives = 226/453 (49%), Gaps = 24/453 (5%) Query: 17 FEEDLKSTQEFMRLKSISATGEGIRETAQVVKAMIEEVGGASEIIE-TPGHPIVYGKLDE 75 +E+L + EF++ SISATGEGI ETA +K +E++ G +E T GHP+VY +++ Sbjct: 1 MDEELYTLIEFLKKPSISATGEGIDETANYLKETVEKLLGVKANLEKTKGHPVVYAEINV 60 Query: 76 GAQYTLLIYSMYDVLPAEE-PDWISDPWAAEIHDFQDYGKCIIGRGAVNTKGPTAAFFNT 134 A+ TLLIY+ YDV P + +W P++A I + + Y RGA + KG A Sbjct: 61 NAKKTLLIYNHYDVQPVDPISEWKRAPFSATIENDRIYA-----RGASDNKGTLMARLFA 115 Query: 135 IKAYKKIKGKLPVNLVFLIEGEEELSSKSLQQFLVDNKDKFAECDAMFFPSFGEENR-VA 193 IK K +L VN+ L EGEEE+ S +L+ ++ N +K + D++ G + + Sbjct: 116 IKHLLD-KNELNVNVKLLYEGEEEIGSVNLEDYIEKNTNKL-KADSVIMEGAGLDPKGRP 173 Query: 194 SIFMGVKGIVSFELKAKGGSWGGPKERGIHGAFAAWVGNPAWRLVKALSTMVGEDEKEIL 253 I +GVKG++ EL G+ + +H + A V NP L K +ST+V + +L Sbjct: 174 QIVLGVKGLLYVELVLDYGT------KDLHSSNAPLVRNPCIDLAKIISTLVDMGGR-VL 226 Query: 254 VEGFYDGILPLAKEGXXXXXXXXXXXXXXQWKKAYAIDRFKWDLEGLDLWKKMLTVPTLN 313 +EGFYD + + KKA K++ E + + +LT PT N Sbjct: 227 IEGFYDDVR--ELTEEERELIKKYDIDVEELKKALGFKELKYN-EKEKIAEALLTYPTCN 283 Query: 314 IDGIKGGYIGEGSKTLLPHETTVKMDIRLVPGMDPEKMLGKIRNHLDKHGYSDIEITEYG 373 +DG + GY G+GSKT++PH K+D RLVP DP K+ ++ HL K G++ EI +G Sbjct: 284 VDGFECGYTGKGSKTIVPHRAFAKLDFRLVPNQDPYKVFELLKKHLQKAGFNG-EILAHG 342 Query: 374 KAXXXXXXXXXXXXXQTLKRMYELMGARPQIWPWNPGSAPYFLFGKILGLPYVTGGMGHG 433 ++ ++ G PQ+ P + G+ P LF LG+ +G G Sbjct: 343 FEYPVRTSVNSTVVKAMIESAKKVYGTEPQVIPNSAGTQPMGLFVYKLGIRDAVSAIGAG 402 Query: 434 ---SRQHSSNEYCTVKGVLDFEKSMVYYLNLFP 463 S H+ NE + K +L L+P Sbjct: 403 GYYSNAHAPNENIKIDDYYKAIKHTEEFLKLYP 435 >gb|EAK20500.1| unknown [environmental sequence] Length = 427 Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 146/435 (33%), Positives = 219/435 (50%), Gaps = 25/435 (5%) Query: 12 YLEQHFEEDLKSTQEFMRLKSISATGEGIRETAQVVKAMIEEVGGASEIIE--TPGHPIV 69 +++++ LK Q + SISA EGI+E + +V ++++ G SEI+ P+V Sbjct: 9 FIDKNKNSLLKDLQTLIHQPSISAKNEGIKECSVLVSKILKKSGIKSEILRLGKNAAPLV 68 Query: 70 YG--KLDEGAQYTLLIYSMYDVLPAEEPD-WISDPWAAEIHDFQDYGKCIIGRGAVNTKG 126 YG K TLL Y+ YDV P E + W P++ +I G I GRGA + KG Sbjct: 69 YGEVKSKNNPNTTLLFYNHYDVQPVEPLELWDDPPFSGKI-----IGNKIFGRGASDDKG 123 Query: 127 PTAAFFNTIKAYKKIKGKLPVNLVFLIEGEEELSSKSLQQFLVDNKDKFAECDAMF--FP 184 +++Y K G +P N+ F+IEGEEE S+++ +L K KF+ CD + F Sbjct: 124 ELITRIKAVESYLKTYGDVPCNVKFVIEGEEENGSENIGTYLKKYKKKFS-CDGVVWEFG 182 Query: 185 SFGEENRVASIFMGVKGIVSFELKAKGGSWGGPKERGIHGAFAAWVGNPAWRLVKALSTM 244 ++NR I +G+KG++ EL AK R +H +FA + NPAWRLV+AL+TM Sbjct: 183 YVDQKNR-PIIGLGMKGLLYVELTAKESV------RDVHSSFAVIIKNPAWRLVQALNTM 235 Query: 245 VGEDEKEILVEGFYDGILPLAKEGXXXXXXXXXXXXXXQWKKAYAIDRFKWDLEGLDLWK 304 E+ K IL++G+YD I PL K +KK Y + F + LD K Sbjct: 236 RDENGK-ILIKGWYDDIKPLTKNDIKLIQKEPFDADG--FKKEYGVKNFVGNKNSLDAKK 292 Query: 305 KMLTVPTLNIDGIKGGYIGEGSKTLLPHETTVKMDIRLVPGMDPEKMLGKIRNHLDKHGY 364 +++ T NI GI GY G+G+KT+LP VK+D RLVP MDP+K++ + HL +G+ Sbjct: 293 ALVSGVTCNIAGIDSGYTGDGAKTVLPGSAKVKIDFRLVPNMDPKKLIKLLEKHLRVNGF 352 Query: 365 SDIEITEYGKAXXXXXXXXXXXXXQTLKRMYELMGARPQIWPWNPGSAPYFLFGKILGLP 424 DI I + ++ G + N G+ P F IL +P Sbjct: 353 GDITINVLNAEAAARTNPNEKIVNTVCESTKKIFGDY-VLNISNAGTGPMHAFTNILSVP 411 Query: 425 YVTGGMGH-GSRQHS 438 ++ G + R HS Sbjct: 412 CISVGASYIFCRMHS 426 >ref|ZP_00063945.1| COG0624: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 445 Score = 193 bits (491), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 137/428 (32%), Positives = 208/428 (48%), Gaps = 22/428 (5%) Query: 21 LKSTQEFMRLKSISATGEGIRETAQVVKAMIEEVGGASEIIETPGHPIVYGKLDEGA--Q 78 L ++ + L S+SAT + E AQ++ E+G +T P V + Sbjct: 10 LNLLRDLVALPSVSATHRCLPEAAQLLTTTFRELGAQVTYDDTYFAPFVLAQFRSSVPDA 69 Query: 79 YTLLIYSMYDVLPAEEPD-WISDPWAAEIHDFQDYGKCIIGRGAVNTKGPTAAFFNTIKA 137 TL+IY+ YDV P E W +DPW HD GK + GRG + KG A I+ Sbjct: 70 QTLVIYNHYDVQPVEPISLWQTDPWTLSEHD----GK-LYGRGTDDDKGNITARLTAIED 124 Query: 138 Y-KKIKGKLPVNLVFLIEGEEELSSKSLQQFLVDNKDKFAECDAMFFPSFGEE-NRVASI 195 Y + +G LPVN+ F+IEG EE SS+ L ++L +D+ D + + S G+ + V I Sbjct: 125 YLTEHEGHLPVNITFIIEGSEESSSQHLDEYLSKYQDQLF-ADLVIWESGGKNVHDVVEI 183 Query: 196 FMGVKGIVSFELKAKGGSWGGPKERGIHGAFAAWVGNPAWRLVKALSTMVGEDEKEILVE 255 F G KGIV+F + K + +H + A V + AWRL +AL+T+ + E I V Sbjct: 184 FGGNKGIVTFNVDVKTA------KTDLHSSLAGVVDSAAWRLTQALATLF-DREGHIAVP 236 Query: 256 GFYDGI-LPLAKEGXXXXXXXXXXXXXXQWKKAYAIDRFKWDLEGLDLWKKMLTVPTLNI 314 GFYD + +P +E Q + D G DL + + PTLNI Sbjct: 237 GFYDDVAIPNQREKELVRNLPTTRDTLIQQHGLTS--PLLSDKTGDDLKETLYFQPTLNI 294 Query: 315 DGIKGGYIGEGSKTLLPHETTVKMDIRLVPGMDPEKMLGKIRNHLDKHGYSDIEITEYGK 374 +GI+ GY+G+G KT+LP + K++ RLVP MDP+K L +I+ H G+SDI +T+ Sbjct: 295 EGIQSGYLGDGVKTVLPAVASAKLEARLVPNMDPDKTLQQIKQHFQNEGFSDIVVTKTLG 354 Query: 375 AXXXXXXXXXXXXXQTLKRMYELMGARPQIWPWNPGSAPYFLFGKILGLPYVTGGMGHG- 433 + + + P I P +PG+ P + + L P + G+G+ Sbjct: 355 QPGYRSDMSDPEILRVIDITEKYYHQHPVIMPTSPGTGPMYYIHEALNAPIASLGVGYAH 414 Query: 434 SRQHSSNE 441 + H+ NE Sbjct: 415 TLDHAPNE 422 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.138 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 717,959,383 Number of extensions: 30348722 Number of successful extensions: 64944 Number of sequences better than 1.0e-05: 198 Number of HSP's gapped: 64682 Number of HSP's successfully gapped: 206 Length of query: 473 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 344 Effective length of database: 406,989,807 Effective search space: 140004493608 Effective search space used: 140004493608 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)