BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0530.0015.p
         (69 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_816837.1| conserved hypothetical protein [Enterococcus fa...   110   8e-24
ref|NP_266871.1| hypothetical protein L121994 [Lactococcus lacti...   103   2e-21
gb|EAC71004.1| unknown [environmental sequence]                        72   4e-12
gb|EAI69666.1| unknown [environmental sequence]                        70   1e-11
gb|EAK40681.1| unknown [environmental sequence]                        68   8e-11

>ref|NP_816837.1| conserved hypothetical protein [Enterococcus faecalis V583]
 gb|AAO82907.1| conserved hypothetical protein [Enterococcus faecalis V583]
          Length = 71

 Score =  110 bits (276), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 58/68 (85%)

Query: 1  MAKKQFICSKCGCKEYAVDQFQATGGNFAKLFDVQNKKFITISCRECGYTELYKSNTASG 60
          M K+Q++C KCG   Y  DQFQATGGNFAK+FDVQNKKFITISC +CGYTELY+S T+ G
Sbjct: 1  MEKQQYVCEKCGNMHYVSDQFQATGGNFAKIFDVQNKKFITISCTQCGYTELYRSQTSGG 60

Query: 61 MNILDFLM 68
          MN+LDFL+
Sbjct: 61 MNVLDFLL 68


>ref|NP_266871.1| hypothetical protein L121994 [Lactococcus lactis subsp. lactis]
 pir||C86714 hypothetical protein yhcC [imported] - Lactococcus lactis subsp.
          lactis (strain IL1403)
 gb|AAK04813.1| HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis]
          Length = 72

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/67 (68%), Positives = 57/67 (85%)

Query: 3  KKQFICSKCGCKEYAVDQFQATGGNFAKLFDVQNKKFITISCRECGYTELYKSNTASGMN 62
          ++Q+ C KCG   +  DQ QATGGNF+K+FDVQNKKFITISC +CGYTELYK+ T++GMN
Sbjct: 5  QQQYTCIKCGNHNFEEDQLQATGGNFSKIFDVQNKKFITISCSQCGYTELYKAQTSTGMN 64

Query: 63 ILDFLMN 69
          ILDFL+N
Sbjct: 65 ILDFLLN 71


>gb|EAC71004.1| unknown [environmental sequence]
          Length = 69

 Score = 72.0 bits (175), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 46/69 (66%)

Query: 1  MAKKQFICSKCGCKEYAVDQFQATGGNFAKLFDVQNKKFITISCRECGYTELYKSNTASG 60
          M  K + C KC  ++Y  DQ  ATGG  ++ F++QNKK+ TI+C+ C +TELYK+ T + 
Sbjct: 1  MNVKNWECPKCYHQDYDTDQLAATGGGMSRFFNIQNKKYTTITCKMCRFTELYKAETTTL 60

Query: 61 MNILDFLMN 69
           N+LDF  N
Sbjct: 61 SNVLDFFGN 69


>gb|EAI69666.1| unknown [environmental sequence]
          Length = 69

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 43/69 (62%)

Query: 1  MAKKQFICSKCGCKEYAVDQFQATGGNFAKLFDVQNKKFITISCRECGYTELYKSNTASG 60
          M KK + CSKC   +Y  D+   TG  F++  +VQN+KF+T+SC  C YTELYK    + 
Sbjct: 1  MEKKTWYCSKCNSMKYDEDRVTMTGTGFSRFLNVQNRKFLTVSCTNCKYTELYKGEMKAW 60

Query: 61 MNILDFLMN 69
           N+LDF  N
Sbjct: 61 ENVLDFFGN 69


>gb|EAK40681.1| unknown [environmental sequence]
          Length = 69

 Score = 67.8 bits (164), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%)

Query: 1  MAKKQFICSKCGCKEYAVDQFQATGGNFAKLFDVQNKKFITISCRECGYTELYKSNTASG 60
          M KK + CSKC   +Y  D+   TG  F++  +VQN+KF+T++C  C YTEL+K    + 
Sbjct: 1  MEKKTWYCSKCNSMKYEEDRITMTGTGFSRFLNVQNRKFLTVTCINCKYTELFKGEMKAW 60

Query: 61 MNILDFLMN 69
           N+LDF  N
Sbjct: 61 ENVLDFFGN 69


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.324    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 98,664,804
Number of extensions: 3127750
Number of successful extensions: 9539
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 9539
Number of HSP's successfully gapped: 15
Length of query: 69
Length of database: 757,237,578
Length adjustment: 40
Effective length of query: 29
Effective length of database: 648,633,618
Effective search space: 18810374922
Effective search space used: 18810374922
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 120 (50.8 bits)