BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0530.0008.p (181 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244542.1| transcriptional regulator (MerR family) [Bacill... 96 3e-19 ref|NP_628643.1| putative merR-family transcriptional regulatory... 65 7e-10 ref|NP_738811.1| putative transcription regulator [Corynebacteri... 60 2e-08 ref|NP_697255.1| transcriptional regulator, MerR family [Brucell... 56 3e-07 gb|EAH21923.1| unknown [environmental sequence] 56 4e-07 >ref|NP_244542.1| transcriptional regulator (MerR family) [Bacillus halodurans] pir||C84109 transcription regulator (MerR family) BH3675 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07394.1| transcriptional regulator (MerR family) [Bacillus halodurans] Length = 131 Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 44/110 (40%), Positives = 77/110 (70%), Gaps = 3/110 (2%) Query: 67 MKIGEVAAITGVNPSAIRHWEKEGLIRAKRNPENGYRVFTSRELKKIIVLSSLRKTVFFI 126 M IGE A +T V SAIRHWEKEGL+ +RN ENGYR++T +++I+++ +LRKTV+F+ Sbjct: 1 MTIGEAAELTNVQTSAIRHWEKEGLLSPERNLENGYRLYTPVHIRQILLIRTLRKTVYFL 60 Query: 127 ESMKQLLEALEIHDLTTIERSFKVALQKLNEQLEKQMNGIAELMRYIQFC 176 + MK++++A+E + ++ + AL ++++ +Q NG+ ++ I+ C Sbjct: 61 DKMKEVVDAVEHQSIEKAKKITEEALVSIHQRNRQQFNGVHQM---IELC 107 >ref|NP_628643.1| putative merR-family transcriptional regulatory protein [Streptomyces coelicolor A3(2)] emb|CAC08384.1| putative merR-family transcriptional regulatory protein [Streptomyces coelicolor A3(2)] Length = 238 Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 5/179 (2%) Query: 1 LIQGFGIPVSYDVMSLLKKGHVEQALWKINSHQYNIQMEK---QRVEEVMSLIQKTDFSK 57 L G+G + VM + G V AL +++ + E+ + E + + D + Sbjct: 60 LQPGYGAVTATRVMRAVHAGDVAGALALVDAAHAALHEERVALRAAGEALEALSGRDAAP 119 Query: 58 Y-KNVQVTEEMKIGEVAAITGVNPSAIRHWEKEGLIRAKRNPENGYRVFTSRELKKIIVL 116 ++ ++IGEVAA+ GV SA+R WE GL+ R GYRV+ +++ V+ Sbjct: 120 PPRSGDGPHGLRIGEVAALVGVRTSALRVWEAAGLLVPGREHGTGYRVYGPADVRDARVV 179 Query: 117 SSLRKTVFFIESMKQLLEAL-EIHDLTTIERSFKVALQKLNEQLEKQMNGIAELMRYIQ 174 +LR++ E ++ +LE L + + + + L + + G A L Y++ Sbjct: 180 RTLRRSHHLFEQIRPVLEDLRRAGSGAALRAAVEARGRALTVRTRSMLAGAAALHAYLE 238 >ref|NP_738811.1| putative transcription regulator [Corynebacterium efficiens YS-314] dbj|BAC19011.1| putative transcription regulator [Corynebacterium efficiens YS-314] Length = 129 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 52/84 (61%), Gaps = 4/84 (4%) Query: 67 MKIGEVAAITGVNPSAIRHWEKEGLIRAKRNPENGYRVFTSRELKKIIVLSSLRKTVFFI 126 +KIGEV +TG++ + +RH++ GLI + G+R+++ +L++I+++ ++ F + Sbjct: 6 LKIGEVTELTGLSATTLRHYDSHGLITSSARSPGGFRLYSQDDLRRILLVRRMKPLGFTL 65 Query: 127 ESMKQLLEALEI----HDLTTIER 146 + M++ L+A EI D+ ER Sbjct: 66 DQMREFLDAAEIIQNPDDIPAAER 89 >ref|NP_697255.1| transcriptional regulator, MerR family [Brucella suis 1330] gb|AAN29170.1| transcriptional regulator, MerR family [Brucella suis 1330] Length = 149 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 63/110 (57%), Gaps = 5/110 (4%) Query: 67 MKIGEVAAITGVNPSAIRHWEKEGLIRAKRNPENGYRVFTSRELKKIIVLSSLRKTVFFI 126 M IG+ AA +G++ IRH+E GLI A +GYR++T ++++ + + R F + Sbjct: 1 MNIGQAAAASGISAKMIRHYETIGLIEAADRTSSGYRIYTQKDVETLRFIRRSRDLGFQV 60 Query: 127 ESMKQLLEALEIHDLTTIERSFKVALQKLNEQLE---KQMNGIAELMRYI 173 E +K+LL + + + KVAL + E+LE +Q+ +A+ +RY+ Sbjct: 61 EQIKELLALWRDRNRASADVK-KVALGHI-EELEAKMRQLQEMADTLRYL 108 >gb|EAH21923.1| unknown [environmental sequence] Length = 159 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 62/109 (56%), Gaps = 5/109 (4%) Query: 68 KIGEVAAITGVNPSAIRHWEKEGLIRAKRNPENGYRVFTSRELKKIIVLSSLRKTVFFIE 127 KIGE+AA GV IR++E+ GL+R GYR++ + +L+++ + S ++ F +E Sbjct: 5 KIGELAAAAGVGRDTIRYYERMGLLREPARTAAGYRLYDATDLERVNFIRSAQELGFTLE 64 Query: 128 SMKQLLEALEIHDLTTIERSFKVALQKLNE---QLEKQMNGIAELMRYI 173 +QLL AL D + + L K+ + +LE+ ++ I +++R + Sbjct: 65 QARQLL-ALRASDTAHAQAVLDITLAKIADAEARLER-LSDIRDMLRML 111 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 232,589,301 Number of extensions: 7989656 Number of successful extensions: 32119 Number of sequences better than 1.0e-05: 39 Number of HSP's gapped: 32237 Number of HSP's successfully gapped: 39 Length of query: 181 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 63 Effective length of database: 436,855,896 Effective search space: 27521921448 Effective search space used: 27521921448 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 122 (51.6 bits)