BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0530.0006.p (207 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_831547.1| Beta-lactamase inhibitory protein II [Bacillus ... 229 3e-59 ref|NP_978244.1| hypothetical protein BCE1928 [Bacillus cereus A... 218 9e-56 ref|NP_844262.1| hypothetical protein [Bacillus anthracis str. A... 98 1e-19 ref|NP_655708.1| hypothetical protein predicted by GeneMark [Bac... 96 4e-19 gb|EAJ49394.1| unknown [environmental sequence] 92 8e-18 >ref|NP_831547.1| Beta-lactamase inhibitory protein II [Bacillus cereus ATCC 14579] gb|AAP08748.1| Beta-lactamase inhibitory protein II [Bacillus cereus ATCC 14579] Length = 295 Score = 229 bits (584), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 120/184 (65%), Positives = 140/184 (76%), Gaps = 9/184 (4%) Query: 1 VGDNKYGQCDVSGWRNIVAVAAGNVHMAKNTGNAHTIGLKSDGTVTAVGWNKHNQCDVND 60 VG NK G+C+VSGWR+I AVA GNVHMA NTGNAHTIGL D T A+GWNKH QCDVND Sbjct: 37 VGRNKEGECNVSGWRDIEAVAVGNVHMATNTGNAHTIGLTCDSTAVALGWNKHEQCDVND 96 Query: 61 WRDIVAVAAGWCRTIGLKSDGTVVAAGRNNEGECNVSGXXXXTAL---------LQSDGS 111 W +IVAVAAGW RTIGLKSDGTVVA GRN EGECNVS A+ L+ DG+ Sbjct: 97 WHNIVAVAAGWRRTIGLKSDGTVVAVGRNKEGECNVSSWQGIVAVTAGDWHTVGLKLDGT 156 Query: 112 VAAAGWNKHNQCDLSGWRGIVAIAAGSSHTIGLKSDGTVTAAGNNRYRQCDVNGWGDIVA 171 + G N++ QC++S WRGIVA+ AG HT+GLK DGTVTA GN+++ QCDV+GW DIVA Sbjct: 157 LTTVGNNRYGQCNVSSWRGIVAVKAGYLHTVGLKRDGTVTAVGNDKHNQCDVSGWRDIVA 216 Query: 172 VAAG 175 +AAG Sbjct: 217 IAAG 220 Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 94/178 (52%), Positives = 120/178 (67%), Gaps = 18/178 (10%) Query: 1 VGDNKYGQCDVSGWRNIVAVAAGNVHMAKNTGNAHTIGLKSDGTVTAVGWNKHNQCDVND 60 VG NK G+C+VS W+ IVAV AG+ HT+GLK DGT+T VG N++ QC+V+ Sbjct: 122 VGRNKEGECNVSSWQGIVAVTAGD---------WHTVGLKLDGTLTTVGNNRYGQCNVSS 172 Query: 61 WRDIVAVAAGWCRTIGLKSDGTVVAAGRNNEGECNVSGXXXXTAL---------LQSDGS 111 WR IVAV AG+ T+GLK DGTV A G + +C+VSG A+ L+S+G+ Sbjct: 173 WRGIVAVKAGYLHTVGLKRDGTVTAVGNDKHNQCDVSGWRDIVAIAAGTNHTIGLKSNGT 232 Query: 112 VAAAGWNKHNQCDLSGWRGIVAIAAGSSHTIGLKSDGTVTAAGNNRYRQCDVNGWGDI 169 V A GWN++ QC++S WR IVAIAAG +HT+GLKSDGTV A GNN + QCDV W DI Sbjct: 233 VVAVGWNEYGQCNVSDWRDIVAIAAGCAHTVGLKSDGTVIAVGNNEFGQCDVGSWRDI 290 Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 67/127 (52%), Positives = 78/127 (61%), Gaps = 18/127 (14%) Query: 67 VAAGWCRTIGLKSDGTVVAAGRNNEGECNVSGXXXXTAL------------------LQS 108 +AAG C T+GLKSDGTVVA GRN EGECNVSG A+ L Sbjct: 18 IAAGRCHTVGLKSDGTVVAVGRNKEGECNVSGWRDIEAVAVGNVHMATNTGNAHTIGLTC 77 Query: 109 DGSVAAAGWNKHNQCDLSGWRGIVAIAAGSSHTIGLKSDGTVTAAGNNRYRQCDVNGWGD 168 D + A GWNKH QCD++ W IVA+AAG TIGLKSDGTV A G N+ +C+V+ W Sbjct: 78 DSTAVALGWNKHEQCDVNDWHNIVAVAAGWRRTIGLKSDGTVVAVGRNKEGECNVSSWQG 137 Query: 169 IVAVAAG 175 IVAV AG Sbjct: 138 IVAVTAG 144 >ref|NP_978244.1| hypothetical protein BCE1928 [Bacillus cereus ATCC 10987] gb|AAS40852.1| hypothetical protein BCE1928 [Bacillus cereus ATCC 10987] Length = 260 Score = 218 bits (554), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 118/184 (64%), Positives = 136/184 (73%), Gaps = 9/184 (4%) Query: 1 VGDNKYGQCDVSGWRNIVAVAAGNVHMAKNTGNAHTIGLKSDGTVTAVGWNKHNQCDVND 60 VG NK G+C+VS W +I AVAAGNVHMA NTGNAHTI LKS+ TV AVGWNKH QCDVND Sbjct: 40 VGRNKEGECNVSSWCDIEAVAAGNVHMATNTGNAHTIALKSNNTVEAVGWNKHGQCDVND 99 Query: 61 WRDIVAVAAGWCRTIGLKSDGTVVAAGRNNEGECNVSGXXXXTAL---------LQSDGS 111 W +IVAVAAGW RTIGLK DGTV+A GRN EGECNVS A L+ G+ Sbjct: 100 WHNIVAVAAGWRRTIGLKLDGTVMAVGRNKEGECNVSSWRNIVATAAGDWHTVGLKVGGT 159 Query: 112 VAAAGWNKHNQCDLSGWRGIVAIAAGSSHTIGLKSDGTVTAAGNNRYRQCDVNGWGDIVA 171 V G N++ QCD+S WR IVA+AAG HT+GLK DGTV A GN+++ QCDV+GW IVA Sbjct: 160 VMGVGNNRYGQCDVSSWRDIVAVAAGYLHTVGLKVDGTVIAVGNDKHNQCDVSGWRGIVA 219 Query: 172 VAAG 175 +AAG Sbjct: 220 IAAG 223 >ref|NP_844262.1| hypothetical protein [Bacillus anthracis str. Ames] gb|AAP25748.1| hypothetical protein BA1843 [Bacillus anthracis str. Ames] Length = 153 Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/100 (52%), Positives = 60/100 (60%), Gaps = 12/100 (12%) Query: 32 GNAHTIGLKSDGTVTAVGWNKHNQCDVNDWRDIVAVAAGWCRTIGLKSDGTVVAAGRNNE 91 G HT+ LK D V GWNKH+QCDVNDW +IVAVAA W RTIGLK DGTV+A G Sbjct: 61 GRGHTVALKYDNAVETTGWNKHDQCDVNDWHNIVAVAARWRRTIGLKPDGTVIAVG---- 116 Query: 92 GECNVSGXXXXTALLQSDGSVAAAGWNKHNQCDLSGWRGI 131 T L+SDG+V A N + QCD+ WR I Sbjct: 117 --------CVHTVGLKSDGTVVAECDNTYGQCDVCSWRNI 148 Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 38/84 (45%), Positives = 47/84 (55%), Gaps = 17/84 (20%) Query: 103 TALLQSDGSVAAAGWNKHNQCDLSGWRGIVAIAA-----------------GSSHTIGLK 145 T L+ D +V GWNKH+QCD++ W IVA+AA G HT+GLK Sbjct: 65 TVALKYDNAVETTGWNKHDQCDVNDWHNIVAVAARWRRTIGLKPDGTVIAVGCVHTVGLK 124 Query: 146 SDGTVTAAGNNRYRQCDVNGWGDI 169 SDGTV A +N Y QCDV W +I Sbjct: 125 SDGTVVAECDNTYGQCDVCSWRNI 148 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 42/69 (60%), Gaps = 8/69 (11%) Query: 4 NKYGQCDVSGWRNIVAVAA---GNVHMAKN-----TGNAHTIGLKSDGTVTAVGWNKHNQ 55 NK+ QCDV+ W NIVAVAA + + + G HT+GLKSDGTV A N + Q Sbjct: 80 NKHDQCDVNDWHNIVAVAARWRRTIGLKPDGTVIAVGCVHTVGLKSDGTVVAECDNTYGQ 139 Query: 56 CDVNDWRDI 64 CDV WR+I Sbjct: 140 CDVCSWRNI 148 >ref|NP_655708.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] Length = 116 Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 52/100 (52%), Positives = 60/100 (60%), Gaps = 12/100 (12%) Query: 32 GNAHTIGLKSDGTVTAVGWNKHNQCDVNDWRDIVAVAAGWCRTIGLKSDGTVVAAGRNNE 91 G HT+ LK D V GWNKH+QCDVNDW +IVAVAA W RTIGLK DGTV+A G Sbjct: 24 GRGHTVALKYDNAVETTGWNKHDQCDVNDWHNIVAVAARWRRTIGLKPDGTVIAVG---- 79 Query: 92 GECNVSGXXXXTALLQSDGSVAAAGWNKHNQCDLSGWRGI 131 T L+SDG+V A N + QCD+ WR I Sbjct: 80 --------CVHTVGLKSDGTVVAECDNTYGQCDVCSWRNI 111 Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/84 (45%), Positives = 47/84 (55%), Gaps = 17/84 (20%) Query: 103 TALLQSDGSVAAAGWNKHNQCDLSGWRGIVAIAA-----------------GSSHTIGLK 145 T L+ D +V GWNKH+QCD++ W IVA+AA G HT+GLK Sbjct: 28 TVALKYDNAVETTGWNKHDQCDVNDWHNIVAVAARWRRTIGLKPDGTVIAVGCVHTVGLK 87 Query: 146 SDGTVTAAGNNRYRQCDVNGWGDI 169 SDGTV A +N Y QCDV W +I Sbjct: 88 SDGTVVAECDNTYGQCDVCSWRNI 111 Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 42/69 (60%), Gaps = 8/69 (11%) Query: 4 NKYGQCDVSGWRNIVAVAA---GNVHMAKN-----TGNAHTIGLKSDGTVTAVGWNKHNQ 55 NK+ QCDV+ W NIVAVAA + + + G HT+GLKSDGTV A N + Q Sbjct: 43 NKHDQCDVNDWHNIVAVAARWRRTIGLKPDGTVIAVGCVHTVGLKSDGTVVAECDNTYGQ 102 Query: 56 CDVNDWRDI 64 CDV WR+I Sbjct: 103 CDVCSWRNI 111 >gb|EAJ49394.1| unknown [environmental sequence] Length = 308 Score = 92.0 bits (227), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 73/191 (38%), Positives = 100/191 (52%), Gaps = 25/191 (13%) Query: 2 GDNKYGQCDVS-GWRNIVAVAAGNVHMAKNTGNAHTIGLKSDGTVTAVGWNKHNQCDVND 60 G + GQ D G ++VAV+AG HT+ L D TV A G+N + Q DV D Sbjct: 68 GQSADGQADPPAGLDSVVAVSAGW---------RHTLALLEDSTVVAWGYNFNGQTDVPD 118 Query: 61 -WRDIVAVAAGWCRTIGLKSDGTVVAAGRNNEGECNVSGXXXXTAL------------LQ 107 +D+VAV+AG+ ++ L SDGT++ G + GE S T++ L+ Sbjct: 119 TLKDVVAVSAGYVHSLVLLSDGTIMEWGASGWGEEQDSIGNSLTSIIAISAGRDHNLALK 178 Query: 108 SDGSVAAAGWN--KHNQCDLSGWRGIVAIAAGSSHTIGLKSDGTVTAAGNNRYRQCDVNG 165 SDG+VA G N +N G G+V IAAG H + LKSDGTV A G N Y Q D Sbjct: 179 SDGTVAVWGLNLSAYNLEPPEGLSGVVDIAAGYYHNLALKSDGTVVAWGQNNYGQTDSQN 238 Query: 166 WGDIVAVAAGY 176 + D+V + AG+ Sbjct: 239 FDDVVQIDAGW 249 Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 88/176 (50%), Gaps = 29/176 (16%) Query: 17 IVAVAAGNVHMAKNTGNAHTIGLKSDGTVT---AVGWNKHNQCDVNDWRDIVAVAAGWCR 73 I VAAG H+A L SD TV+ GW + ++N D+V VAAG Sbjct: 7 IRGVAAGEQHLAY---------LHSDSTVSIWPEGGWLQPGP-EIN--HDVVQVAAGLNF 54 Query: 74 TIGLKSDGTVVAAGRNNEGECN----------VSGXXXXTALLQSDGSVAAAGWNKHNQC 123 TIGL++DGT+ G++ +G+ + VS T L D +V A G+N + Q Sbjct: 55 TIGLRADGTLFGYGQSADGQADPPAGLDSVVAVSAGWRHTLALLEDSTVVAWGYNFNGQT 114 Query: 124 DLSG-WRGIVAIAAGSSHTIGLKSDGTVT---AAGNNRYRQCDVNGWGDIVAVAAG 175 D+ + +VA++AG H++ L SDGT+ A+G + N I+A++AG Sbjct: 115 DVPDTLKDVVAVSAGYVHSLVLLSDGTIMEWGASGWGEEQDSIGNSLTSIIAISAG 170 Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 77/161 (47%), Gaps = 24/161 (14%) Query: 2 GDNKYGQCDVSG-WRNIVAVAAGNVHMAKNTGNAHTIGLKSDGTVT---AVGWNKHNQCD 57 G N GQ DV +++VAV+AG VH ++ L SDGT+ A GW + Sbjct: 107 GYNFNGQTDVPDTLKDVVAVSAGYVH---------SLVLLSDGTIMEWGASGWGEEQDSI 157 Query: 58 VNDWRDIVAVAAGWCRTIGLKSDGTVVAAG-----RNNEGECNVSGXXXXTA------LL 106 N I+A++AG + LKSDGTV G N E +SG A L Sbjct: 158 GNSLTSIIAISAGRDHNLALKSDGTVAVWGLNLSAYNLEPPEGLSGVVDIAAGYYHNLAL 217 Query: 107 QSDGSVAAAGWNKHNQCDLSGWRGIVAIAAGSSHTIGLKSD 147 +SDG+V A G N + Q D + +V I AG + + L++D Sbjct: 218 KSDGTVVAWGQNNYGQTDSQNFDDVVQIDAGWNFNLALRAD 258 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.131 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 292,735,253 Number of extensions: 11177193 Number of successful extensions: 23204 Number of sequences better than 1.0e-05: 20 Number of HSP's gapped: 23146 Number of HSP's successfully gapped: 50 Length of query: 207 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 87 Effective length of database: 431,425,698 Effective search space: 37534035726 Effective search space used: 37534035726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)