BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0530.0004.p
         (46 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_831547.1| Beta-lactamase inhibitory protein II [Bacillus ...    75   7e-13
ref|NP_978244.1| hypothetical protein BCE1928 [Bacillus cereus A...    71   7e-12
ref|NP_844262.1| hypothetical protein [Bacillus anthracis str. A...    67   1e-10
ref|NP_655708.1| hypothetical protein predicted by GeneMark [Bac...    66   2e-10

>ref|NP_831547.1| Beta-lactamase inhibitory protein II [Bacillus cereus ATCC 14579]
 gb|AAP08748.1| Beta-lactamase inhibitory protein II [Bacillus cereus ATCC 14579]
          Length = 295

 Score = 74.7 bits (182), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 33/40 (82%), Positives = 38/40 (95%)

Query: 7   AAGCAHTVGLKADGTVVAVGDNEYGQCDVSAWRGIRLPGK 46
           AAGCAHTVGLK+DGTV+AVG+NE+GQCDV +WR IRLPGK
Sbjct: 256 AAGCAHTVGLKSDGTVIAVGNNEFGQCDVGSWRDIRLPGK 295



 Score = 54.7 bits (130), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/35 (74%), Positives = 30/35 (85%)

Query: 7   AAGCAHTVGLKADGTVVAVGDNEYGQCDVSAWRGI 41
           AAG  HT+GLK++GTVVAVG NEYGQC+VS WR I
Sbjct: 218 AAGTNHTIGLKSNGTVVAVGWNEYGQCNVSDWRDI 252



 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 28/34 (82%)

Query: 8   AGCAHTVGLKADGTVVAVGDNEYGQCDVSAWRGI 41
           AG  HTVGLK DGT+  VG+N YGQC+VS+WRGI
Sbjct: 143 AGDWHTVGLKLDGTLTTVGNNRYGQCNVSSWRGI 176


>ref|NP_978244.1| hypothetical protein BCE1928 [Bacillus cereus ATCC 10987]
 gb|AAS40852.1| hypothetical protein BCE1928 [Bacillus cereus ATCC 10987]
          Length = 260

 Score = 71.2 bits (173), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 36/40 (90%)

Query: 7   AAGCAHTVGLKADGTVVAVGDNEYGQCDVSAWRGIRLPGK 46
           AAG  HT+GLK+DGTVVAVG+N YGQCDVS+WR IRLPGK
Sbjct: 221 AAGTNHTIGLKSDGTVVAVGENTYGQCDVSSWRNIRLPGK 260



 Score = 54.7 bits (130), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/35 (71%), Positives = 30/35 (85%)

Query: 7   AAGCAHTVGLKADGTVVAVGDNEYGQCDVSAWRGI 41
           AAG  HTVGLK DGTV+AVG++++ QCDVS WRGI
Sbjct: 183 AAGYLHTVGLKVDGTVIAVGNDKHNQCDVSGWRGI 217



 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/35 (71%), Positives = 28/35 (80%)

Query: 7   AAGCAHTVGLKADGTVVAVGDNEYGQCDVSAWRGI 41
           AAG  HTVGLK  GTV+ VG+N YGQCDVS+WR I
Sbjct: 145 AAGDWHTVGLKVGGTVMGVGNNRYGQCDVSSWRDI 179


>ref|NP_844262.1| hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAP25748.1| hypothetical protein BA1843 [Bacillus anthracis str. Ames]
          Length = 153

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/40 (75%), Positives = 32/40 (80%)

Query: 7   AAGCAHTVGLKADGTVVAVGDNEYGQCDVSAWRGIRLPGK 46
           A GC HTVGLK+DGTVVA  DN YGQCDV +WR IRLP K
Sbjct: 114 AVGCVHTVGLKSDGTVVAECDNTYGQCDVCSWRNIRLPSK 153


>ref|NP_655708.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
           A2012]
          Length = 116

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/40 (75%), Positives = 32/40 (80%)

Query: 7   AAGCAHTVGLKADGTVVAVGDNEYGQCDVSAWRGIRLPGK 46
           A GC HTVGLK+DGTVVA  DN YGQCDV +WR IRLP K
Sbjct: 77  AVGCVHTVGLKSDGTVVAECDNTYGQCDVCSWRNIRLPSK 116


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.320    0.138    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 63,759,825
Number of extensions: 1318035
Number of successful extensions: 3800
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3800
Number of HSP's successfully gapped: 11
Length of query: 46
Length of database: 757,237,578
Length adjustment: 19
Effective length of query: 27
Effective length of database: 705,650,697
Effective search space: 19052568819
Effective search space used: 19052568819
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)