BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0529.0011.p
         (84 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD30137.1| putative class-II aminotransferase [Bacillus thu...   101   5e-21
ref|NP_810311.1| putative aminotransferase B [Bacteroides thetai...    90   1e-17
gb|EAC37734.1| unknown [environmental sequence]                        89   2e-17
ref|NP_465893.1| similar to aminotransferase [Listeria monocytog...    85   6e-16
ref|NP_471799.1| similar to aminotransferase [Listeria innocua] ...    84   8e-16

>emb|CAD30137.1| putative class-II aminotransferase [Bacillus thuringiensis
          serovar israelensis]
          Length = 387

 Score =  101 bits (252), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/76 (57%), Positives = 57/76 (75%)

Query: 1  LKYDFNRIIDRRNTRSYKWDQSEKLFGDKDILPLWVADMDFESPPAVKDAILRRVQEGIY 60
          +K DF++ IDR  T SYKWDQS+ LF  +DILP+WVADMDF SPPAV +A++ R   G+Y
Sbjct: 1  MKLDFDQQIDRLYTASYKWDQSKILFETEDILPMWVADMDFMSPPAVVNALINRATHGVY 60

Query: 61 GYSVTSDSYKSAIAGW 76
          GY++  DSY S+I  W
Sbjct: 61 GYTIIPDSYYSSIIDW 76


>ref|NP_810311.1| putative aminotransferase B [Bacteroides thetaiotaomicron
          VPI-5482]
 gb|AAO76505.1| putative aminotransferase B [Bacteroides thetaiotaomicron
          VPI-5482]
          Length = 385

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 53/76 (69%), Gaps = 4/76 (5%)

Query: 1  LKYDFNRIIDRRNTRSYKWDQSEKLFGDKDILPLWVADMDFESPPAVKDAILRRVQEGIY 60
          +KY+F+ I+ RR T SYKWD +    GD D+LP+WVADMDF + P+V +A+ RRV+ GI+
Sbjct: 1  MKYNFDEIVPRRGTNSYKWDSA----GDADVLPMWVADMDFRTAPSVVEALKRRVEHGIF 56

Query: 61 GYSVTSDSYKSAIAGW 76
          GY    D+Y  AI  W
Sbjct: 57 GYVRVPDAYYEAITRW 72


>gb|EAC37734.1| unknown [environmental sequence]
          Length = 233

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/76 (51%), Positives = 52/76 (68%)

Query: 1  LKYDFNRIIDRRNTRSYKWDQSEKLFGDKDILPLWVADMDFESPPAVKDAILRRVQEGIY 60
          +  +F+R +DRR T SYKWD +E+LFG +D+LP WVADMDF +P  + DAI  R +  + 
Sbjct: 1  MNINFDRRVDRRGTDSYKWDDNERLFGRRDLLPFWVADMDFATPTPILDAIRSRCEHPVL 60

Query: 61 GYSVTSDSYKSAIAGW 76
          GY + SDSY  AI  W
Sbjct: 61 GYGIRSDSYFEAIEDW 76


>ref|NP_465893.1| similar to aminotransferase [Listeria monocytogenes EGD-e]
 pir||AB1371 aminotransferase homolog lmo2370 [imported] - Listeria
          monocytogenes (strain EGD-e)
 emb|CAD00448.1| lmo2370 [Listeria monocytogenes]
          Length = 388

 Score = 84.7 bits (208), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/78 (47%), Positives = 50/78 (64%)

Query: 5  FNRIIDRRNTRSYKWDQSEKLFGDKDILPLWVADMDFESPPAVKDAILRRVQEGIYGYSV 64
          F+ +I R  T S KWD +E+LFG KDI+P+WVADMDF +P  V DA  R++  GI+GYS 
Sbjct: 4  FDEVIPRIGTNSEKWDGAEELFGRKDIIPMWVADMDFRAPKPVLDAFQRQIDHGIFGYST 63

Query: 65 TSDSYKSAIAGWDXXXXQ 82
           S +   A+  W+    Q
Sbjct: 64 KSKALVEAVIDWNKEQHQ 81


>ref|NP_471799.1| similar to aminotransferase [Listeria innocua]
 pir||AH1740 aminotransferase homolog lin2469 [imported] - Listeria innocua
          (strain Clip11262)
 emb|CAC97696.1| lin2469 [Listeria innocua]
          Length = 388

 Score = 84.3 bits (207), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/78 (47%), Positives = 50/78 (64%)

Query: 5  FNRIIDRRNTRSYKWDQSEKLFGDKDILPLWVADMDFESPPAVKDAILRRVQEGIYGYSV 64
          F+ +I R  T S KWD +E+LFG KDI+P+WVADMDF +P  V DA  R++  GI+GYS 
Sbjct: 4  FDEVIPRIGTNSEKWDGAEELFGRKDIIPMWVADMDFRAPKPVLDAFQRQIDHGIFGYST 63

Query: 65 TSDSYKSAIAGWDXXXXQ 82
           S +   A+  W+    Q
Sbjct: 64 KSAALVEAVIDWNKEQHQ 81


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.136    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 124,460,874
Number of extensions: 4222157
Number of successful extensions: 9460
Number of sequences better than 1.0e-05: 120
Number of HSP's gapped: 9388
Number of HSP's successfully gapped: 120
Length of query: 84
Length of database: 757,237,578
Length adjustment: 53
Effective length of query: 31
Effective length of database: 613,337,331
Effective search space: 19013457261
Effective search space used: 19013457261
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)