BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0529.0006.p
         (1587 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00088699.1| COG3210: Large exoproteins involved in heme u...    68   2e-09
ref|NP_901141.1| probable adhesin [Chromobacterium violaceum ATC...    64   2e-08

>ref|ZP_00088699.1| COG3210: Large exoproteins involved in heme utilization or adhesion
            [Azotobacter vinelandii]
          Length = 2716

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 99/193 (51%), Gaps = 38/193 (19%)

Query: 1309 WTPIGDEEEHAFQGTLDGGGHLIDGLTM-RSAVFSHSGLFGVIGAGGTVKNINLEPLTIA 1367
            + PIGD     F GT DG GH+I  LT+ RS   ++ GLFG +G+ G++ N+ LE  +++
Sbjct: 1589 FNPIGDIGT-TFTGTFDGNGHIISDLTLNRSDSENYIGLFGYVGSSGSIANVGLEDGSVS 1647

Query: 1368 GS-QFAGAVAGRNLGTVS----NIDLKLLNGSKISGGTVGSIIGENTGSVSALHLTLD-- 1420
            G   + G++AG N GT+S    ++++ +   S   GG    ++G N GS+S  H T D  
Sbjct: 1648 GGYYYIGSLAGYNAGTISGSHADVNVSVSGASWYGGG----LVGYNAGSISDSHATGDVQ 1703

Query: 1421 --GGSRIETVYTGGIAGGIIGDNTSELVYTADSDSTKALAASTYLLTAIDGSIGSSADQA 1478
              G SR    Y     GG++G+NT  + Y+                     + G  + + 
Sbjct: 1704 AVGVSR---EYGSQYLGGLVGNNTGSIQYSY--------------------ATGDVSGEY 1740

Query: 1479 VIGGIVGRQSGNV 1491
            ++GG+VG  SG++
Sbjct: 1741 IVGGLVGSNSGSI 1753


>ref|NP_901141.1| probable adhesin [Chromobacterium violaceum ATCC 12472]
 gb|AAQ59146.1| probable adhesin [Chromobacterium violaceum ATCC 12472]
          Length = 1043

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 159/352 (45%), Gaps = 74/352 (21%)

Query: 832  VENLLISSGTEGADAYIGGLVGYNDQSRLERLAGKTLNLTLNGPNVKTGGIAGYHLGTNT 891
            V+NL +++ +    A +G LVG N+   ++ +   T++ T++G N + GG+AGY+ G+  
Sbjct: 566  VQNLSLANASVTGHATVGALVG-NNAGTIKNV---TVSGTVSGTNTEIGGVAGYNTGSLD 621

Query: 892  AVIANNYITALSLKTNATAANSVIGGIVGLNAAQAGDPVPNPGTAVSTIQNSRILGSINA 951
             V ++  +      T  + A+  +GG+VG +                +I N+ + G++N 
Sbjct: 622  RVTSSATVNG----TGISGASDYVGGLVGYSTG-------------GSISNASVSGAVNV 664

Query: 952  VSPSSVIGGMVGENRSLIANNSITDKLPVSSKGDNAIFGGLAGR---NTAAGTLYYTYSN 1008
             + +  IGG++G + S I+N++ T  +       NA+FGG  G      A GT+  +Y+ 
Sbjct: 665  AAHNYYIGGLIGYSNSTISNSAATGNV-------NAVFGGYTGGFIGYAAGGTVSASYAT 717

Query: 1009 ANMT----------------------------IXXXXXXXXXXXXXXXXQVIG-SYVDID 1039
             ++T                            +                  IG SY   +
Sbjct: 718  GSVTAGDYGYDDNAGFIGVNYAPITNSYSTGTVTLAQSWYSGGLVGQNHANIGNSYSSSN 777

Query: 1040 IT---GKAAG---SASQSVFLGGLIGRNSAGSVEQSYSSSKVT-----ANGKYT---VVG 1085
            IT   G AAG   SA+ +  +GGL+G N AG++   Y++  V      ANG Y     +G
Sbjct: 778  ITVSSGPAAGGDGSATYTNSVGGLVGYNVAGNLSNVYATGNVISTGQGANGTYYGSYYIG 837

Query: 1086 GLVGEHTGGSIKNSYVAKSVNALGEQSYAGGFIGRITNGKVTNAYSAAEVTA 1137
            GLVG    G+I +SY   +V A      AGG +G    G  TN Y++  VTA
Sbjct: 838  GLVGYVGSGNITHSYATGNVTATALIQGAGGLVGEAVAGTYTNDYASGNVTA 889


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.311    0.131    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 2,337,290,819
Number of extensions: 106144865
Number of successful extensions: 287964
Number of sequences better than 1.0e-05: 151
Number of HSP's gapped: 285184
Number of HSP's successfully gapped: 447
Length of query: 1587
Length of database: 757,237,578
Length adjustment: 139
Effective length of query: 1448
Effective length of database: 379,838,817
Effective search space: 550006607016
Effective search space used: 550006607016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 133 (55.8 bits)