BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0529.0005.p (2572 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAC45001.1| xylanase 5 [Paenibacillus sp. W-61] 105 1e-20 ref|ZP_00060097.1| hypothetical protein [Clostridium thermocellu... 103 4e-20 ref|NP_624131.1| Subtilisin-like serine proteases [Thermoanaerob... 103 5e-20 ref|ZP_00060727.1| hypothetical protein [Clostridium thermocellu... 102 2e-19 ref|ZP_00181616.1| hypothetical protein Mther037501 [Moorella th... 101 2e-19 >dbj|BAC45001.1| xylanase 5 [Paenibacillus sp. W-61] Length = 1326 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 97/183 (53%), Gaps = 6/183 (3%) Query: 2383 KAFKDIAKGFWAGPDISSASGKLFVLGTSADTFAPQAKITRAELPTILLRVAGLMNNTAA 2442 K+F D+ WA I + + + + G S ++FAP A ITRA+ T+L+R L Sbjct: 1147 KSFADVQHVLWAKEAIEAMAARDIIKGISDESFAPAASITRADFITLLVRALELKGKDTN 1206 Query: 2443 KQGFKDVAESSWYFRSVSIAADLGIVTGLSEGTYAPKSTLTRMEAMTMVGRLLNVVSSGG 2502 F DV +++Y ++V+IA +LGI +G + T+ P S+++R + M + + L ++G Sbjct: 1207 AAAFSDVQSTAYYAQAVAIAKELGIASGFEDNTFKPGSSISRQDMMVLTAKALK--AAGK 1264 Query: 2503 ESMGDAEAAQILNAFADKGEIPAWAKSPIALSIKYGIIRGVNGKINPAGVLTRAEAAAMA 2562 S G L ++D I +A + + GI+ G GKI P LTRAEAA + Sbjct: 1265 PSTGSGN----LAPYSDAASISTYAVDSVTSLVGSGIVNGKGGKIAPTESLTRAEAAVIL 1320 Query: 2563 NRL 2565 +R+ Sbjct: 1321 SRI 1323 >ref|ZP_00060097.1| hypothetical protein [Clostridium thermocellum ATCC 27405] pir||JC6031 scaffoldin dockerin binding protein precursor - Clostridium thermocellum gb|AAB07763.1| SdbA Length = 631 Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 66/186 (35%), Positives = 97/186 (52%), Gaps = 12/186 (6%) Query: 2383 KAFKDIAKGFWAGPDISSASGKLFVLGTSADTFAPQAKITRAELPTILLRVAGLMNNTAA 2442 K F DI WA I + K + GTS TF PQA ITRA+ +L++ GL + Sbjct: 452 KTFADIGSYAWAKKQIEVLASKGVINGTSDTTFTPQADITRADFMILLVKALGLTAEVTS 511 Query: 2443 KQGFKDVAESSWYFRSVSIAADLGIVTGLSEGTYAPKSTLTRMEAMTMVGRLLNV---VS 2499 F DV+E +Y+ V IA +LGI TG+ + PK+ +TR + M + L + +S Sbjct: 512 --NFDDVSEKDYYYEYVGIAKELGITTGVGNNKFNPKAKITRQDMMVLTTNALRIAGKIS 569 Query: 2500 SGGESMGDAEAAQILNAFADKGEIPAWAKSPIALSIKYGIIRGVNGKINPAGVLTRAEAA 2559 S G + D E F+DK +I ++A +A +K GI+ G INP G +RAE A Sbjct: 570 STG-TRADVE------RFSDKDQIASYAVEGVATLVKEGIVVGSGDIINPRGNASRAELA 622 Query: 2560 AMANRL 2565 A+ ++ Sbjct: 623 AIIYKI 628 >ref|NP_624131.1| Subtilisin-like serine proteases [Thermoanaerobacter tengcongensis] gb|AAM25735.1| Subtilisin-like serine proteases [Thermoanaerobacter tengcongensis] Length = 1999 Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 112/233 (48%), Gaps = 14/233 (6%) Query: 2338 KDITAV---VLKNAAGQWTTIPWKPDSSGTAVDVQLTGEGSLFFINNAKAFKDIAKGFWA 2394 KDI V L G+W + K D + + + + K FKD+ K FW Sbjct: 1769 KDIRKVGIYYLNEVTGKWEYVGGKIDKNANTITFEAKHFSTYGAFEYDKQFKDVEKDFWG 1828 Query: 2395 GPDISSASGKLFVLGTSADTFAPQAKITRAELPTILLRVAGLMNNTAAKQGFKDVAESSW 2454 I+ + + + G + DTFAP AKITRAE +++R G+ K F+DV E W Sbjct: 1829 YDVINVLASRHIIKGMTEDTFAPNAKITRAEFAALMIRALGIPEE-PYKGEFEDVKEGMW 1887 Query: 2455 YFRSVSIAADLGIVTGLSEGTYAPKSTLTRMEAMTMVGRLLNVVSS-GGESMGDAEAAQI 2513 Y ++ A GI+ G + P +TR E ++ R+ + ++ E++G+ Sbjct: 1888 YANAIEAAYQEGIMLGDGK-KMRPDDPITREEMAAVIMRVYSKLAGYKEENIGNT----- 1941 Query: 2514 LNAFADKGEIPAWAKSPIALSIKYGIIRGV-NGKINPAGVLTRAEAAAMANRL 2565 FAD +I WA++ +A ++K GI+RG + P TRAEAAAM R+ Sbjct: 1942 --TFADNNKISEWARNVVANAVKLGIVRGYDDNTFKPKDNATRAEAAAMLYRI 1992 >ref|ZP_00060727.1| hypothetical protein [Clostridium thermocellum ATCC 27405] Length = 2547 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 12/221 (5%) Query: 2349 AGQWTTIP---WKPDSSGTAVDVQLTGEGSLFFINNAKAFKDIAKGFWAGPDISSASGKL 2405 +G+ + IP +K D+ VQ +G+ ++ + K+F D+ WA I + K Sbjct: 2326 SGKLSAIPMAVYKEDAGKVIFSVQQSGKYAVAY--RYKSFDDLKGYDWAKEQIEILASKG 2383 Query: 2406 FVLGTSADTFAPQAKITRAELPTILLRVAGLMNNTAAKQGFKDVAESSWYFRSVSIAADL 2465 + GTS+ ++P ITRA+ ++++ GL + F DV+ +Y+ +V IA Sbjct: 2384 IINGTSSTKYSPGLNITRADAVILIVKALGL--EAEFTENFDDVSADKYYYEAVGIARSF 2441 Query: 2466 GIVTGLSEGTYAPKSTLTRMEAMTMVGRLLNVVSSGGESMGDAEAAQILNAFADKGEIPA 2525 GIVTG+ + P++ +TR E M +V R L VV G ++ + ++ L AF D EI Sbjct: 2442 GIVTGVGNNKFNPETPITRQELMVIVNRALKVV---GINLDTGDVSE-LEAFKDFSEISP 2497 Query: 2526 WAKSPIALSIKYGIIRGVNGK-INPAGVLTRAEAAAMANRL 2565 +A +A +K GII+G + K I P +TRAE A + +L Sbjct: 2498 YAVESVAALVKAGIIKGDDNKLIAPLRNITRAETAVIIYKL 2538 >ref|ZP_00181616.1| hypothetical protein Mther037501 [Moorella thermoacetica ATCC 39073] Length = 308 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 104/223 (46%), Gaps = 4/223 (1%) Query: 2348 AAGQWTTIPWKPDSSGTAVDVQLTGEGSLFFINNAKAFKDIAKGFWAGPDISSASGKLFV 2407 AAG W + D + ++ L + K F DI +G WA DI + + Sbjct: 89 AAGTWEYKGGRVDKATNSISAVLNSFSKYTVLAYDKTFSDI-QGHWAQRDIEIMAARHVA 147 Query: 2408 LGTSADTFAPQAKITRAELPTILLRVAGLMNNTAAKQGFKDVAESSWYFRSVSIAADLGI 2467 G SA F P+ ++TRAE LLR G+ + +A F D+ WY+ +V A+ G+ Sbjct: 148 AGISASEFKPEGQVTRAEFTAFLLRTLGISEDRSAANRFADIQPGDWYYGAVVTASRTGL 207 Query: 2468 VTGLSEGTYAPKSTLTRMEAMTMVGRLLNVVSSGGESMGDAEAAQILNAFADKGEIPAWA 2527 V G +G++ P ++R E M+ R L + G + IL+ F+D G + +WA Sbjct: 208 VAGYEDGSFRPDKAISRQEMAAMLARALAYAGQKVDVAGRVD--DILSKFSDNGSLASWA 265 Query: 2528 KSPIALSIKYGIIRGVNG-KINPAGVLTRAEAAAMANRLDQFI 2569 + A++++ G+I G P G TRAE M RL I Sbjct: 266 RESAAVAVESGLIVGRTATTFVPLGNATRAETVVMLKRLQDRI 308 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.313 0.133 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 3,659,071,941 Number of extensions: 158256788 Number of successful extensions: 284791 Number of sequences better than 1.0e-05: 97 Number of HSP's gapped: 284714 Number of HSP's successfully gapped: 103 Length of query: 2572 Length of database: 757,237,578 Length adjustment: 143 Effective length of query: 2429 Effective length of database: 368,978,421 Effective search space: 896248584609 Effective search space used: 896248584609 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 135 (56.6 bits)