BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0526.0012.p
         (129 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00060865.1| COG1334: Uncharacterized flagellar protein Fl...    77   1e-13
ref|NP_622179.1| uncharacterized flagellar protein FlaG [Thermoa...    70   2e-11
ref|ZP_00169998.1| hypothetical protein Raeut123101 [Ralstonia e...    57   2e-07
ref|NP_693423.1| hypothetical protein OB2502 [Oceanobacillus ihe...    52   3e-06

>ref|ZP_00060865.1| COG1334: Uncharacterized flagellar protein FlaG [Clostridium
           thermocellum ATCC 27405]
          Length = 140

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 53/70 (75%)

Query: 60  LIQQLEKAIRAVQGPEKTFKISIHEQTHSIMVKVFDKQTGDLIREIPPEKLLDVAANMME 119
           +I+ +EKA +A+ G     + SIHE++  IMVKV D +T ++IREIPPEK+LD+ A M+E
Sbjct: 71  IIKAIEKANKAINGIHTELEFSIHEKSKEIMVKVIDSETKEVIREIPPEKILDMVAAMLE 130

Query: 120 LSGLIVDEKA 129
           ++G+IV+E+ 
Sbjct: 131 MAGIIVNERG 140


>ref|NP_622179.1| uncharacterized flagellar protein FlaG [Thermoanaerobacter
           tengcongensis]
 gb|AAM23783.1| uncharacterized flagellar protein FlaG [Thermoanaerobacter
           tengcongensis]
          Length = 113

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 53/77 (68%)

Query: 52  SLPVERDQLIQQLEKAIRAVQGPEKTFKISIHEQTHSIMVKVFDKQTGDLIREIPPEKLL 111
           S PV+ D+L ++L K  R +      F+ S+H+ T++I+VK+ D +T ++I EIPPEK+L
Sbjct: 36  SKPVDEDKLNRELNKENRRITIDRTYFEFSVHKPTNTIVVKIVDSETNEVIDEIPPEKIL 95

Query: 112 DVAANMMELSGLIVDEK 128
           D+ A + +++GL VD K
Sbjct: 96  DLVAGLWKIAGLFVDRK 112


>ref|ZP_00169998.1| hypothetical protein Raeut123101 [Ralstonia eutropha JMP134]
          Length = 112

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 16/118 (13%)

Query: 16  VPSNTPA------AVQGVVFPTKGGSENDTSLKSSELAIETASLPVERDQLIQQLEKAIR 69
           +PS+ PA      A  GV FP  G  ++D+    +  +++T++           + + + 
Sbjct: 3   LPSDVPASTIGVQAPTGVSFPVVGNGQDDSGKTGAAGSVDTSA----------AVGELVE 52

Query: 70  AVQGPEKTFKISIHEQTHSIMVKVFDKQTGDLIREIPPEKLLDVAANMMELSGLIVDE 127
           A++    + +  I E TH ++ KV DK+TG+LIR++P  ++L +A+ + +L GL V +
Sbjct: 53  ALKSTSISLRFEIDESTHRVITKVVDKETGELIRQMPTVEVLRIASAIDKLQGLFVSQ 110


>ref|NP_693423.1| hypothetical protein OB2502 [Oceanobacillus iheyensis HTE831]
 dbj|BAC14458.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 120

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)

Query: 12  SNKIVPSNTPAAVQGVVFPTKGGSENDTSLKSSELAIETASLPVERDQLIQQLEKAIRAV 71
           +NK+  S T +        T+GG         +E  +    L    D +  +L K IR  
Sbjct: 18  TNKVALSQTKSITNENSHQTQGGY--------AEKIVNKVDLEDAVDHM-NELLKPIR-- 66

Query: 72  QGPEKTFKISIHEQTHSIMVKVFDKQTGDLIREIPPEKLLDVAANMMELSGLIVDEK 128
               +  K  +HE+     V V D +T ++I+EIPP+K+LD+ A + E  G ++DEK
Sbjct: 67  ----RNLKFEMHEKLERYYVTVVDSETSEVIKEIPPKKMLDMYAELAEFMGFLIDEK 119


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.312    0.129    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 175,709,108
Number of extensions: 5903658
Number of successful extensions: 15177
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 15180
Number of HSP's successfully gapped: 5
Length of query: 129
Length of database: 757,237,578
Length adjustment: 92
Effective length of query: 37
Effective length of database: 507,448,470
Effective search space: 18775593390
Effective search space used: 18775593390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 120 (50.8 bits)