BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0526.0010.p
         (77 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_868213.1| probable carbon storage regulator [Pirellula sp...    75   4e-13
ref|ZP_00183367.1| hypothetical protein Exigu121801 [Exiguobacte...    74   1e-12
ref|NP_693424.1| carbon storage regulator [Oceanobacillus iheyen...    72   3e-12
gb|EAI92246.1| unknown [environmental sequence]                        72   5e-12
ref|ZP_00098301.1| COG1551: Carbon storage regulator (could also...    70   1e-11

>ref|NP_868213.1| probable carbon storage regulator [Pirellula sp. 1]
 emb|CAD78491.1| probable carbon storage regulator [Pirellula sp.]
          Length = 70

 Score = 75.1 bits (183), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 48/57 (84%)

Query: 1  MLVLSRKKGESIVIQNDIVVTVLAVEGDVVKIGISAPKDIDIYRKEIFDAIQQNNQS 57
          MLVLSRKK ESIVI NDI + V+ + GD V++G+ AP+++ ++R+E++DAIQ+NN++
Sbjct: 1  MLVLSRKKNESIVINNDIKIVVVEIRGDKVRLGVEAPREVPVHRREVYDAIQRNNEA 57


>ref|ZP_00183367.1| hypothetical protein Exigu121801 [Exiguobacterium sp. 255-15]
          Length = 75

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 45/58 (77%)

Query: 1  MLVLSRKKGESIVIQNDIVVTVLAVEGDVVKIGISAPKDIDIYRKEIFDAIQQNNQSA 58
          MLVL RK GE+I I +DI +T+LA+EGD VK+GI AP+ IDI+RKEI+ AIQ  N  A
Sbjct: 1  MLVLKRKTGEAIQIGDDIELTILAIEGDQVKLGIHAPRQIDIHRKEIYLAIQDENAEA 58


>ref|NP_693424.1| carbon storage regulator [Oceanobacillus iheyensis HTE831]
 dbj|BAC14459.1| carbon storage regulator [Oceanobacillus iheyensis HTE831]
          Length = 74

 Score = 72.4 bits (176), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 51/67 (76%), Gaps = 1/67 (1%)

Query: 1  MLVLSRKKGESIVIQNDIVVTVLAVEGDVVKIGISAPKDIDIYRKEIF-DAIQQNNQSAV 59
          MLVL+RK+ E+I I  DI + V+A+EG+ VK+GI APK +DIYRKEI+ D   QNN++A+
Sbjct: 1  MLVLTRKQSEAIQIGEDIEIEVIAIEGEQVKLGIRAPKSVDIYRKEIYVDITNQNNEAAI 60

Query: 60 LDLEAIQ 66
          +D   +Q
Sbjct: 61 IDKNLLQ 67


>gb|EAI92246.1| unknown [environmental sequence]
          Length = 60

 Score = 71.6 bits (174), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 47/56 (83%)

Query: 1  MLVLSRKKGESIVIQNDIVVTVLAVEGDVVKIGISAPKDIDIYRKEIFDAIQQNNQ 56
          ML+L+RK GES++I  DI VTVL V+G+ V+IGI+APKDI ++R+EIFD IQ++ +
Sbjct: 1  MLILTRKSGESLMIGEDISVTVLGVKGNQVRIGINAPKDIAVHREEIFDKIQEDTK 56


>ref|ZP_00098301.1| COG1551: Carbon storage regulator (could also regulate swarming
          and quorum sensing) [Desulfitobacterium hafniense]
          Length = 77

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 49/61 (80%), Gaps = 1/61 (1%)

Query: 1  MLVLSRKKGESIVIQNDIVVTVLAVEGDVVKIGISAPKDIDIYRKEIFDAI-QQNNQSAV 59
          ML L+RK GE IVI ++IVVTV+A++GD +++ I APK+I IYR EI+DAI  +N ++AV
Sbjct: 1  MLALTRKAGERIVIGDNIVVTVVAIKGDSIRLTIDAPKEIKIYRGEIYDAIAAENKEAAV 60

Query: 60 L 60
          L
Sbjct: 61 L 61


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.316    0.135    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 99,011,954
Number of extensions: 3148589
Number of successful extensions: 9595
Number of sequences better than 1.0e-05: 90
Number of HSP's gapped: 9594
Number of HSP's successfully gapped: 90
Length of query: 77
Length of database: 757,237,578
Length adjustment: 47
Effective length of query: 30
Effective length of database: 629,627,925
Effective search space: 18888837750
Effective search space used: 18888837750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)