BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0526.0003.p (206 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_295112.1| competence protein ComF, putative [Deinococcus ... 81 2e-14 ref|NP_904499.1| competence protein F-related protein [Porphyrom... 72 7e-12 ref|NP_622166.1| predicted amidophosphoribosyltransferases [Ther... 70 4e-11 ref|NP_244492.1| late competence protein required for DNA uptake... 68 1e-10 ref|NP_951186.1| competence protein F, putative [Geobacter sulfu... 67 2e-10 >ref|NP_295112.1| competence protein ComF, putative [Deinococcus radiodurans] pir||F75402 probable competence protein ComF - Deinococcus radiodurans (strain R1) gb|AAF10957.1| competence protein ComF, putative [Deinococcus radiodurans] Length = 219 Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 67/119 (56%), Gaps = 21/119 (17%) Query: 68 WQADLLVPVPVSDSRLAERGFNQAERLADVLSRRRGVPQLPLLVRTHHTGKQSFKSRAER 127 WQ +VPVP+ SR ERG+NQAE LA ++ GVP LPLL RT T +Q+ +ER Sbjct: 106 WQIAAVVPVPLHPSRQRERGYNQAELLAQAMAAELGVPCLPLLTRTRATAQQAKLHASER 165 Query: 128 LADMKHAFAVNPDPAVDSQFAHWLEVSGQGRGALPL-QIIIVDDIYTTGSTIRACAETI 185 +++ AFAV RGA+P ++I+DD+ TTGST+ AC + + Sbjct: 166 SSNLAGAFAV--------------------RGAVPPGTLLILDDVLTTGSTLLACRDAL 204 >ref|NP_904499.1| competence protein F-related protein [Porphyromonas gingivalis W83] gb|AAQ65398.1| competence protein F-related protein [Porphyromonas gingivalis W83] Length = 246 Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 46/181 (25%) Query: 6 GMREILGQYKYRGNERLGPLLGLMLDQAYTILQAERGQMPRDGGSKQRHPLIPAFKSKRT 65 G+R ++ KY G +G +LG M ++Y L + Sbjct: 84 GVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLSKD------------------------- 118 Query: 66 RLWQADLLVPVPVSDSRLAERGFNQAERLADVLSRRRGVPQLPLLVRTHHTGKQSFKSRA 125 DL+VPVP+ + +RG+NQA +A LSR G+P L R +T Q+ +S + Sbjct: 119 ----YDLIVPVPLHPRKQRKRGYNQALLIAQGLSRVTGIPVQEGLRRKVYTDSQTGQSYS 174 Query: 126 ERLADMKHAFAVNPDPAVDSQFAHWLEVSGQGRGALPLQIIIVDDIYTTGSTIRACAETI 185 ER + MK FA++P+ V +++++VDD+ TTG+T++A AE + Sbjct: 175 ERKSAMKGKFALSPNTRVAG-----------------IRVLLVDDVLTTGATVQAAAEPL 217 Query: 186 A 186 A Sbjct: 218 A 218 >ref|NP_622166.1| predicted amidophosphoribosyltransferases [Thermoanaerobacter tengcongensis] gb|AAM23770.1| predicted amidophosphoribosyltransferases [Thermoanaerobacter tengcongensis] Length = 228 Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 22/137 (16%) Query: 68 WQADLLVPVPVSDSRLAERGFNQAERLADVLSRRRGVPQLPLLVRTHHTGKQSFKSRAER 127 W +++VPVP+ RL ERG+NQ+E LA LS R + L R +T Q+ R ER Sbjct: 110 WNIEVIVPVPLHRIRLDERGYNQSELLARELSYRLNIFMSKALRRVKNTTTQTALHREER 169 Query: 128 LADMKHAFAVNPDPAVDSQFAHWLEVSGQGRGALPLQIIIVDDIYTTGSTIRACAETIAG 187 + ++K AF V ++ + +++VDD+ TTG+T+ CA+ + Sbjct: 170 MENVKGAFKVTYKDTIEGK-----------------NVLLVDDVLTTGATLDECAKALKE 212 Query: 188 LAGSFGCSAEIYSLTWA 204 + E+Y +T A Sbjct: 213 NG-----AKEVYVVTIA 224 >ref|NP_244492.1| late competence protein required for DNA uptake [Bacillus halodurans] pir||A84103 late competence protein required for DNA uptake comFC [imported] - Bacillus halodurans (strain C-125) dbj|BAB07344.1| late competence protein required for DNA uptake [Bacillus halodurans] Length = 177 Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 89/210 (42%), Gaps = 71/210 (33%) Query: 3 YTSGMREILGQYKYRGNERLGPLLGLMLDQAYTILQAERGQMPRDGGSKQRHPLIPAFKS 62 Y ++ +L Q K+RG+ +L +A+ HPL+ Sbjct: 32 YNPFLKNVLTQLKFRGDVKLA--------EAF-------------------HPLLKKLYQ 64 Query: 63 KRTRLWQADLLVPVPVSDSRLAERGFNQAERL-------ADVLSRRRGVPQLPLLVRTHH 115 K ++ D++VP+P+S RL ERGFNQ E L DVL+R+ G Sbjct: 65 KE---FKFDVIVPIPLSKDRLIERGFNQVEALLAKWCTYEDVLARKPG------------ 109 Query: 116 TGKQSFKSRAERLADMKHAFAVNPDPAVDSQFAHWLEVSGQGRGALPLQIIIVDDIYTTG 175 KQS KSR ER+ F + G+ I++VDD+YTTG Sbjct: 110 -RKQSKKSRIERIQQRTTPFMLK----------------GEAEAVEGRSIVLVDDVYTTG 152 Query: 176 STIRACAETIAGLAGSFGCSAEIYSLTWAR 205 +TIR A T+ G +A + S+T AR Sbjct: 153 ATIRQAA-TVLQAHG----AARVRSMTIAR 177 >ref|NP_951186.1| competence protein F, putative [Geobacter sulfurreducens PCA] gb|AAR33459.1| competence protein F, putative [Geobacter sulfurreducens PCA] Length = 238 Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 67/114 (58%), Gaps = 18/114 (15%) Query: 70 ADLLVPVPVSDSRLAERGFNQAERLADVLSRRRGVP-QLPLLVRTHHTGKQSFKSRAERL 128 +DL++PVP+ SRL ERGFNQA + ++L+RR +P L R T Q + A+R Sbjct: 122 SDLIIPVPLHRSRLRERGFNQAILMGELLARRWRIPLHRATLGRVRATAPQVGLTSAQRR 181 Query: 129 ADMKHAFAVNPDPAVDSQFAHWLEVSGQGRGALPLQIIIVDDIYTTGSTIRACA 182 +++ AFAV P PA V+G+ +++++DD++TTGSTI CA Sbjct: 182 ENIRGAFAV-PSPAA---------VAGR-------RVLLLDDVFTTGSTIAECA 218 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 308,999,086 Number of extensions: 12589280 Number of successful extensions: 23712 Number of sequences better than 1.0e-05: 60 Number of HSP's gapped: 23704 Number of HSP's successfully gapped: 60 Length of query: 206 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 86 Effective length of database: 431,425,698 Effective search space: 37102610028 Effective search space used: 37102610028 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)