BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0526.0001.p (476 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAQ23689.1| unknown [Geobacillus stearothermophilus] 161 4e-38 ref|NP_349900.1| Glycosyltransferase fused to TPR-repeat domain ... 159 2e-37 ref|ZP_00071100.1| COG0457: FOG: TPR repeat [Trichodesmium eryth... 154 4e-36 ref|NP_464215.1| similar to unknown protein [Listeria monocytoge... 146 9e-34 ref|NP_470039.1| similar to unknown protein [Listeria innocua] >... 144 5e-33 >gb|AAQ23689.1| unknown [Geobacillus stearothermophilus] Length = 355 Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 106/320 (33%), Positives = 168/320 (52%), Gaps = 19/320 (5%) Query: 1 MTQLSVCMIVKDEEALLSRCLESVKGIADEIIIVDTGSTDRTKQIAENFGAKIYDYVWSN 60 MT L++ MIVK+EE LSRCL+SVKGI DE++IVDTGSTDRTK+IA FGAK++D+ W N Sbjct: 1 MTTLALVMIVKNEERHLSRCLQSVKGIVDEMVIVDTGSTDRTKEIAYAFGAKVFDFEWVN 60 Query: 61 DFAAARNESLRHAAGKWILVLDADEYLGSNDHSKWIEFLQKEKPQAQLAYTLPVINFTGE 120 DF+ ARN +L + W VLDADEY+ ++ S F++K + GE Sbjct: 61 DFSTARNYALEKSTSDWNFVLDADEYIMNDCGSVIRNFIEKNDKVIGRIKRIDEFIQDGE 120 Query: 121 KDYQEEMTTAPVTRLFPNFKGIHFERPIHEQLTRGGKEKLLHKKISLEIYHTGYQIQRVT 180 K Y + + ++RL P KG+ + +HEQ+ L + + +E+YH GY Sbjct: 121 KRYAQ----SYLSRLLP--KGVKYVGRVHEQVN----SDLPRENLDIEVYHDGY-----V 165 Query: 181 EKSKHERNMSIFNEMKKANKLSAYDWFTLGNQYRFGKEDEEALQCYERAAKGATAKEAWY 240 K +RN+ + + + L+ Y + +G QY+ ++ ++A +E++ A ++WY Sbjct: 166 YTDKTDRNLKLLLLELERDPLNDYVLYQVGKQYKLRQQLQQAESYFEKSY-NLVALKSWY 224 Query: 241 SHCL-MGLISLYFKNGRLDSSWRWTEKELYKYKDFSEYHTIKGVHFETLGFFDDAIASYL 299 H L + + N + + E E ++ D ++H G+ + L F + + Y+ Sbjct: 225 RHSLIIDYLYTIIGNKSFEKGLKLIETERDRFADSPDFHFACGLFYMDLIFSN--VNKYI 282 Query: 300 QAINTAEQRAKRNQEIWLVD 319 EQ R EI D Sbjct: 283 HLFPLIEQSFLRCLEIGDTD 302 >ref|NP_349900.1| Glycosyltransferase fused to TPR-repeat domain [Clostridium acetobutylicum] pir||E97306 glycosyltransferase fused to TPR-repeat domain [imported] - Clostridium acetobutylicum gb|AAK81240.1| Glycosyltransferase fused to TPR-repeat domain [Clostridium acetobutylicum] Length = 593 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 109/343 (31%), Positives = 179/343 (52%), Gaps = 7/343 (2%) Query: 2 TQLSVCMIVKDEEALLSRCLESVKGIADEIIIVDTGSTDRTKQIAENFGAKIYDYVWSND 61 ++S+CMIVK+EE L +CL+SVK I DEIIIVDTGSTD+T +IA+ FGA+I+ ++W+N Sbjct: 3 NEISLCMIVKNEEKYLFQCLDSVKDIVDEIIIVDTGSTDKTVEIAKKFGAEIHYFMWNNS 62 Query: 62 FAAARNESLRHAAGKWILVLDADEYLGSNDHSKWIEFLQKEKPQAQLAYTLPVINFTGEK 121 F+ ARNESL++A WI ++D D+ +D K+ E L K + Y +++ GE Sbjct: 63 FSDARNESLKYATKDWIFIMDGDDEFSKDDKEKFKE-LVKNNLKEDCLYYFETLSYCGEF 121 Query: 122 DYQEEMTTAPVTRLFPNFKGIHFERPIHEQLTRGGKEKLLHKKISLEIYHTGYQIQRVTE 181 ++ RLF N G +E +H QL KE + + ++ IYH GY + Sbjct: 122 VDSSNISVNLNPRLFKNNYGYKYEGIVHNQLINTEKE-IKNVIYNIRIYHYGYLEDVSKK 180 Query: 182 KSKHERNMSIFNEMKKANKLSAYDWFTLGNQYRFGKEDEEALQCYERAAKGATAKEAWYS 241 K+K RN+ + + K N + F +GN+Y + ++AL Y A K + Sbjct: 181 KNKRGRNIPLLKKQLKENPDDRFAHFNIGNEYYAIGDLQKALTHYCEAYKDFNPSSGFGF 240 Query: 242 HCLMGLISLYFKNGRLDSSWRWTEKELYKYKDFSEYHTIKGVHFETLGFFDDAIASYLQA 301 + LI F G+ + + + + L Y + ++ + +K + +E AI + + Sbjct: 241 VLITRLIVTNFGIGKHEKAIEFADIGLEYYPNATDIYFLKALIYEATRRPTLAIKALKRC 300 Query: 302 INTAEQRAKRNQEIWLVDPMYSFETPVQQLVDIYFRLNDNQQA 344 I E + + L +SF+ + +LV+IY L D ++A Sbjct: 301 IEMGEPPSN----LKLYYGTWSFKA-LYELVNIYMGLKDYEEA 338 >ref|ZP_00071100.1| COG0457: FOG: TPR repeat [Trichodesmium erythraeum IMS101] Length = 396 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 122/361 (33%), Positives = 177/361 (49%), Gaps = 56/361 (15%) Query: 4 LSVCMIVKDEEALLSRCLESVKGIADEIIIVDTGSTDRTKQIAENFGAKIYDYVWSNDFA 63 L+ C+IVK+EE L RCL SVK + DEI+++DTGSTDRT +IA+ FGAK++ + W NDFA Sbjct: 3 LTFCIIVKNEEKNLPRCLASVKNVVDEIVVLDTGSTDRTPEIAQEFGAKVHYFEWCNDFA 62 Query: 64 AARNESLRHAAGKWILVLDADEYLGSNDHSKWIEFLQKEKPQAQLAYTLPVINFTGEKDY 123 AARNESL++ G W+LVLDADEYL + +Q ++ Y L IN E+ Sbjct: 63 AARNESLKYVTGDWVLVLDADEYLSPKIAPHIRQAIQSDR------YIL--INLIREEIG 114 Query: 124 QEEMTTAPVTRLFPNFKGIHFERPIHEQLTRGGKEKLLHKK-------ISLEIYHTGYQI 176 ++ + V+RLF N GI F RP H + E L + + I H GYQ Sbjct: 115 AQQSPYSLVSRLFRNHPGIKFSRPYHAIVDDSISEILAKESNWQIGSLSEIAILHEGYQK 174 Query: 177 QRVTEKSKHER---NMSIF-----NEMKKANKLSA------------------------- 203 +T K+K ER M F N+ +KL A Sbjct: 175 GEITSKNKLERAKAAMESFIIDYPNDAYVCSKLGALYLEVDEREKAMELLFRGLQDSEVD 234 Query: 204 ----YDW-FTLGNQYRFGKEDEEALQCYERAAK-GATAKEAWYSHCLMGLISLYFKNGRL 257 Y+ + LG YR +E E A + Y+ A + K ++ +G SL + G L Sbjct: 235 KTVLYELHYHLGIAYRQKQEKEMAKRHYQIATELNILPKLKLGAYNNLG--SLLKEEGNL 292 Query: 258 DSSWRWTEKELYKYKDFSEYHTIKGVHFETLGFFDDAIASYLQAINTAEQRAKRNQEIWL 317 + + E L +F+ H +G+ + +G+F +AIASY +AI A+ Q + + Sbjct: 293 EQAKTNYEIALQIDSNFTVGHYNRGMVLKEMGWFTEAIASYQKAIQLDANYAEAYQNLGV 352 Query: 318 V 318 V Sbjct: 353 V 353 >ref|NP_464215.1| similar to unknown protein [Listeria monocytogenes EGD-e] pir||AH1160 hypothetical protein lmo0688 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98766.1| lmo0688 [Listeria monocytogenes] Length = 637 Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 128/226 (56%), Gaps = 5/226 (2%) Query: 4 LSVCMIVKDEEALLSRCLESVKGIADEIIIVDTGSTDRTKQIAENFGAKIYDYVWSNDFA 63 +S+CMIVK+E +L + L S + +EIIIVDTGSTD TK+IA+ F +YD+ W+ +F+ Sbjct: 5 ISICMIVKNEAHILRQSLASFRKFTEEIIIVDTGSTDETKEIAQEFTDFVYDFEWTGNFS 64 Query: 64 AARNESLRHAAGKWILVLDADEYLGSNDHSKWIEFLQKEKPQAQLAYTLPVINFTGEKDY 123 ARN + +HA GKWIL +DADE L + K + L+ Q+A +I+FTGEK Sbjct: 65 DARNFAAKHATGKWILAIDADECLEEESYRKLEKQLKSPTEPIQMA---QIISFTGEKG- 120 Query: 124 QEEMTTAPVTRLFPNFKGIHFERPIHEQLTRGGKEKLLHKKISLEIYHTGYQIQRVTEKS 183 TT + R++ N I F IHEQL K + ++IYH GY + V ++ Sbjct: 121 -RVTTTNQMARVYKNDGTICFRGVIHEQLEAIDKRPIAAGVAEVKIYHYGYMSEIVEKQD 179 Query: 184 KHERNMSIFNEMKKANKLSAYDWFTLGNQYRFGKEDEEALQCYERA 229 K +RN+ + + K NK S + F +G + +EAL+ + A Sbjct: 180 KSDRNLRLLEKEVKNNKNSGFVHFNIGQEMNRLGNKKEALKEFSEA 225 >ref|NP_470039.1| similar to unknown protein [Listeria innocua] pir||AH1519 hypothetical protein homolog lin0696 [imported] - Listeria innocua (strain Clip11262) emb|CAC95928.1| lin0696 [Listeria innocua] Length = 637 Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 128/226 (56%), Gaps = 5/226 (2%) Query: 4 LSVCMIVKDEEALLSRCLESVKGIADEIIIVDTGSTDRTKQIAENFGAKIYDYVWSNDFA 63 +S+CMIVK+E +L + L S + +EIIIVDTGSTD TK+IA+ F +YD+ W+ +F+ Sbjct: 5 ISICMIVKNEAHILRQSLASFRKFTEEIIIVDTGSTDDTKEIAKEFTDFVYDFEWTGNFS 64 Query: 64 AARNESLRHAAGKWILVLDADEYLGSNDHSKWIEFLQKEKPQAQLAYTLPVINFTGEKDY 123 ARN + +HA GKWIL +DADE L + K + L+ Q+A +I+FTGEK Sbjct: 65 DARNFAAKHATGKWILAIDADECLEEESYRKLEKQLKSPIEPIQMA---QIISFTGEKG- 120 Query: 124 QEEMTTAPVTRLFPNFKGIHFERPIHEQLTRGGKEKLLHKKISLEIYHTGYQIQRVTEKS 183 TT + R++ N I F IHEQL K + ++IYH GY + V ++ Sbjct: 121 -RVTTTNQMARVYKNDGTICFRGVIHEQLEAVDKHAIEAGLAEVKIYHYGYMSEIVEKQD 179 Query: 184 KHERNMSIFNEMKKANKLSAYDWFTLGNQYRFGKEDEEALQCYERA 229 K +RN+ + + K NK S + F +G + +EAL+ + A Sbjct: 180 KSDRNLRLLEKEVKNNKNSGFVHFNIGQEMNRLGNKKEALKEFSEA 225 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.134 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 660,345,737 Number of extensions: 25919084 Number of successful extensions: 62624 Number of sequences better than 1.0e-05: 158 Number of HSP's gapped: 62851 Number of HSP's successfully gapped: 158 Length of query: 476 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 347 Effective length of database: 406,989,807 Effective search space: 141225463029 Effective search space used: 141225463029 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)