BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0054.p (323 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_623229.1| ABC-type phosphate transport system, periplasmi... 286 5e-76 ref|NP_466022.1| similar to phosphate ABC transporter (binding p... 260 4e-68 ref|NP_471972.1| similar to phosphate ABC transporter (binding p... 258 1e-67 ref|NP_390378.1| alternate gene name: yzmB~similar to phosphate ... 256 6e-67 ref|ZP_00037019.1| COG0226: ABC-type phosphate transport system,... 253 4e-66 >ref|NP_623229.1| ABC-type phosphate transport system, periplasmic component [Thermoanaerobacter tengcongensis] gb|AAM24833.1| ABC-type phosphate transport system, periplasmic component [Thermoanaerobacter tengcongensis] Length = 291 Score = 286 bits (732), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 143/239 (59%), Positives = 175/239 (73%), Gaps = 3/239 (1%) Query: 46 DLSGSILASGSTALQPLVEQVAEKFMETNKDVDIQVQGGGSGTGLTQVAEKQVDIGNSDV 105 +LSG+I +GSTALQPLVEQ A+ FME +V I VQGGGSGTGLTQV + +DIGNSD+ Sbjct: 43 ELSGNITIAGSTALQPLVEQAAKLFMEKYPNVSITVQGGGSGTGLTQVVQGAIDIGNSDI 102 Query: 106 FXXXXXXXXXXXXXXXXVDHQVAVVAIAAVSHPDAGVDSLTKQQLVDIFTGKVTNWKEVG 165 F VDHQVA V A V + D VD LT+QQL+DIFTGK+TNWKEVG Sbjct: 103 FAEEKLDPNIAKQL---VDHQVAKVGFAVVVNKDVTVDDLTQQQLIDIFTGKITNWKEVG 159 Query: 166 GKDQKIQIINRPSSSGTRATFEGFALGTKTEDLQGSIQEDSSGTVKKMIGETPGAIGYLA 225 G D KI IINRP+SSGTRATF+ L + E ++ EDSSG V+K + +T GAI YLA Sbjct: 160 GPDMKIVIINRPTSSGTRATFKKVVLKGQEEAQGIALTEDSSGAVRKAVADTKGAISYLA 219 Query: 226 LSYLDDSVKTLKYDGVEPSVDNVVSGKYPVWAYEHMYTNGEPNEIVKAFLDYIMTPEVQ 284 LSY+D+SVK LKY+GVEP+V N++ GKYP+W+YEHMYT GEP VKAFLD++++ EVQ Sbjct: 220 LSYVDNSVKALKYEGVEPTVQNIIDGKYPIWSYEHMYTKGEPKGAVKAFLDFMLSDEVQ 278 >ref|NP_466022.1| similar to phosphate ABC transporter (binding protein) [Listeria monocytogenes EGD-e] pir||AC1387 phosphate ABC transporter (binding protein) homolog lmo2499 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00577.1| lmo2499 [Listeria monocytogenes] Length = 302 Score = 260 bits (664), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 135/239 (56%), Positives = 167/239 (69%), Gaps = 6/239 (2%) Query: 46 DLSGSILASGSTALQPLVEQVAEKFMETNKDVDIQVQGGGSGTGLTQVAEKQVDIGNSDV 105 ++SGS+ A GSTALQPLVE +++F TN I VQGGGSGTGLTQV + V+IGNSDV Sbjct: 41 EVSGSLTAVGSTALQPLVEAASKEFTNTNPKAQINVQGGGSGTGLTQVQQGAVEIGNSDV 100 Query: 106 FXXXXXXXXXXXXXXXXVDHQVAVVAIAAVSHPDAGVDSLTKQQLVDIFTGKVTNWKEVG 165 F VDH+VAVV +A V + D GV ++TKQQL+DIFTGK TNWK+VG Sbjct: 101 FAEEKDGVDASKL----VDHRVAVVGMAPVVNKDVGVKNITKQQLIDIFTGKTTNWKDVG 156 Query: 166 GKDQKIQIINRPSSSGTRATFEGFALGTKTEDLQGSIQEDSSGTVKKMIGETPGAIGYLA 225 GKD+KI IINR SGTRATFE + L KT + ++DSSGTV+K++ ETPGAI YLA Sbjct: 157 GKDEKITIINRAEGSGTRATFEKWGLDGKTP--IKAQEQDSSGTVRKIVSETPGAISYLA 214 Query: 226 LSYLDDSVKTLKYDGVEPSVDNVVSGKYPVWAYEHMYTNGEPNEIVKAFLDYIMTPEVQ 284 SY+D SV L DGVEP+ D V + + +W+YEHMYTNGEP + K FL Y+ + EVQ Sbjct: 215 FSYIDASVVGLSLDGVEPTEDKVATNDWKIWSYEHMYTNGEPKGLTKTFLKYMTSDEVQ 273 >ref|NP_471972.1| similar to phosphate ABC transporter (binding protein) [Listeria innocua] pir||AE1762 phosphate ABC transporter (binding protein) homolog lin2642 [imported] - Listeria innocua (strain Clip11262) emb|CAC97869.1| lin2642 [Listeria innocua] Length = 302 Score = 258 bits (660), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 134/239 (56%), Positives = 167/239 (69%), Gaps = 6/239 (2%) Query: 46 DLSGSILASGSTALQPLVEQVAEKFMETNKDVDIQVQGGGSGTGLTQVAEKQVDIGNSDV 105 ++SGS+ A GSTALQPLVE +++F TN I VQGGGSGTGLTQV + V+IGNSDV Sbjct: 41 EVSGSLTAVGSTALQPLVEAASKEFTNTNPKAQINVQGGGSGTGLTQVQQGAVEIGNSDV 100 Query: 106 FXXXXXXXXXXXXXXXXVDHQVAVVAIAAVSHPDAGVDSLTKQQLVDIFTGKVTNWKEVG 165 F VDH+VAVV +A V + D GV ++TKQQL+DIFTGK TNWK+VG Sbjct: 101 FAEEKDGVDASKL----VDHRVAVVGMAPVVNKDVGVKNITKQQLIDIFTGKTTNWKDVG 156 Query: 166 GKDQKIQIINRPSSSGTRATFEGFALGTKTEDLQGSIQEDSSGTVKKMIGETPGAIGYLA 225 GKD+KI IINR SGTRATFE + L KT + ++DSSGTV+K++ ETPGAI YLA Sbjct: 157 GKDEKITIINRAEGSGTRATFEKWGLDGKTP--VKAQEQDSSGTVRKIVSETPGAISYLA 214 Query: 226 LSYLDDSVKTLKYDGVEPSVDNVVSGKYPVWAYEHMYTNGEPNEIVKAFLDYIMTPEVQ 284 SY+D SV L DGVEP+ + V + + +W+YEHMYTNGEP + K FL Y+ + EVQ Sbjct: 215 FSYIDASVVGLSLDGVEPTEEKVATNDWKIWSYEHMYTNGEPKGLTKTFLKYMTSDEVQ 273 >ref|NP_390378.1| alternate gene name: yzmB~similar to phosphate ABC transporter (binding protein) [Bacillus subtilis] sp|P46338|YQGG_BACSU Probable ABC transporter binding protein yqgG precursor pir||A69956 phosphate ABC transporter (binding protein) homolog yqgG - Bacillus subtilis dbj|BAA09581.1| ORF108 [Bacillus subtilis] dbj|BAA12510.1| YqgG [Bacillus subtilis] emb|CAB14429.1| phosphate ABC transporter (binding protein) [Bacillus subtilis subsp. subtilis str. 168] Length = 300 Score = 256 bits (653), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 139/238 (58%), Positives = 167/238 (70%), Gaps = 7/238 (2%) Query: 48 SGSILASGSTALQPLVEQVAEKFMETNKDVDIQVQGGGSGTGLTQVAEKQVDIGNSDVFX 107 SGS+ SGS+A+QPLV AEKFME N D DIQVQ GGSGTGL+QV+E V IGNSDVF Sbjct: 43 SGSLTISGSSAMQPLVLAAAEKFMEENPDADIQVQAGGSGTGLSQVSEGAVQIGNSDVFA 102 Query: 108 XXXXXXXXXXXXXXXVDHQVAVVAIAAVSHPDAGVDSLTKQQLVDIFTGKVTNWKEVGGK 167 VDHQVAVV +AA +PDAGV ++K +L IFTGK+ NWKE+GGK Sbjct: 103 EEKEGIDAKAL----VDHQVAVVGMAAAVNPDAGVKDISKDELKKIFTGKIKNWKELGGK 158 Query: 168 DQKIQIINRPSSSGTRATFEGFALGTKTEDLQGSIQEDSSGTVKKMIGETPGAIGYLALS 227 DQKI ++NRP SSGTRATF +AL E +G I EDSS TVKK+I +TPGAIGYLA S Sbjct: 159 DQKITLVNRPDSSGTRATFVKYAL-DGAEPAEG-ITEDSSNTVKKIIADTPGAIGYLAFS 216 Query: 228 YL-DDSVKTLKYDGVEPSVDNVVSGKYPVWAYEHMYTNGEPNEIVKAFLDYIMTPEVQ 284 YL DD V L DGV+P NV +G+YP+WAY+H YT GE + K FLDY+ + ++Q Sbjct: 217 YLTDDKVTALSIDGVKPEAKNVATGEYPIWAYQHSYTKGEATGLAKEFLDYLKSEDIQ 274 >ref|ZP_00037019.1| COG0226: ABC-type phosphate transport system, periplasmic component [Enterococcus faecium] Length = 296 Score = 253 bits (646), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 130/236 (55%), Positives = 166/236 (70%), Gaps = 6/236 (2%) Query: 51 ILASGSTALQPLVEQVAEKFMETNKDVDIQVQGGGSGTGLTQVAEKQVDIGNSDVFXXXX 110 I+A GSTALQPLV+ E F++ N + I VQGGGSGTGL+QV V IGNSDVF Sbjct: 43 IVAVGSTALQPLVDAAQESFVQENPNYQISVQGGGSGTGLSQVEAGAVTIGNSDVFAEER 102 Query: 111 XXXXXXXXXXXXVDHQVAVVAIAAVSHPDAGVDSLTKQQLVDIFTGKVTNWKEVGGKDQK 170 VDH+VAVV +A + + D V +TKQ+L+DIFTGK+TNWKEVGGKDQK Sbjct: 103 DGVDASKL----VDHKVAVVGMAPIVNKDTDVKDITKQELIDIFTGKITNWKEVGGKDQK 158 Query: 171 IQIINRPSSSGTRATFEGFALGTKTEDLQGSIQEDSSGTVKKMIGETPGAIGYLALSYLD 230 I ++NR + SGTRATFE + L T +Q S ++DSSGTV++++ +TPGAI YLA SYLD Sbjct: 159 INVVNRANGSGTRATFEKWGLDGATP-VQ-SQEQDSSGTVRQLVSQTPGAISYLAFSYLD 216 Query: 231 DSVKTLKYDGVEPSVDNVVSGKYPVWAYEHMYTNGEPNEIVKAFLDYIMTPEVQTG 286 DS + L DGVEP +NV + +W+YEHMYTNG+P+ V+ FLDY+MT E+Q G Sbjct: 217 DSTQALSIDGVEPKEENVADNSWGIWSYEHMYTNGKPSPEVQKFLDYMMTEEIQEG 272 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.133 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 386,652,745 Number of extensions: 15178632 Number of successful extensions: 30473 Number of sequences better than 1.0e-05: 198 Number of HSP's gapped: 30336 Number of HSP's successfully gapped: 202 Length of query: 323 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 197 Effective length of database: 415,135,104 Effective search space: 81781615488 Effective search space used: 81781615488 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 126 (53.1 bits)