BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0051.p (314 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_977671.1| membrane protein, putative [Bacillus cereus ATC... 229 7e-59 ref|NP_655138.1| DUF6, Integral membrane protein DUF6 [Bacillus ... 227 4e-58 ref|NP_243613.1| BH2747~unknown conserved protein in others [Bac... 226 6e-58 ref|NP_831011.1| Transporter, Drug/Metabolite Exporter family [B... 220 3e-56 ref|NP_954430.1| membrane protein, putative [Geobacter sulfurred... 168 2e-40 >ref|NP_977671.1| membrane protein, putative [Bacillus cereus ATCC 10987] gb|AAS40279.1| membrane protein, putative [Bacillus cereus ATCC 10987] Length = 309 Score = 229 bits (584), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 118/251 (47%), Positives = 162/251 (64%), Gaps = 1/251 (0%) Query: 28 IVAISFSAIFIKWSAAPASVQGMYRLLFTSLLMLPFARPYSGAAFALRRKDWXXXXXXXX 87 I+AISF+A+F+K S+AP+S+ MYRL LLMLP ++ KDW Sbjct: 21 IIAISFAAVFVKMSSAPSSILSMYRLWIIVLLMLPIVWKKREEFSKIQIKDWGFLIGSGF 80 Query: 88 XXXXHFLLWMGSLKYTSVASSTMIMALEPVFIMLGAYILYKDRSTXXXXXXXXXXXFGVV 147 HFLLW SLK+T+VASST+I+AL+P+ ++G + L+K+R+T GVV Sbjct: 81 FLALHFLLWFESLKHTTVASSTIILALQPIVSLVGGFFLFKERTTYSAIATMGIAILGVV 140 Query: 148 LIGWGDIGLSSDNLKGDLLSVGGTVTVAGHLLIGQKLVARMPSYLYSLIVFITAAVVFAI 207 IGWGD+GLS + GD+LS + V G+L IGQ V ++ ++YS VF A + I Sbjct: 141 CIGWGDLGLSEQAIYGDILSFLSVIAVVGYLFIGQTTVKKVSHWIYSFTVFAFAGIFMGI 200 Query: 208 YNLLAGIPFLDYPPREWGIFVLLAVVPTVFGHILFNWLLQFTSATTVSMNILGEPVGASI 267 YN++ +PF Y +W +F+LLAVVPTV H++ NWLL + +ATT+SM+ILGEPVGASI Sbjct: 201 YNIVLQVPFTGYTKWDWTVFLLLAVVPTV-SHVINNWLLNYVNATTISMSILGEPVGASI 259 Query: 268 LAFLLLGEQLT 278 LAF LLGE+L Sbjct: 260 LAFFLLGERLN 270 >ref|NP_655138.1| DUF6, Integral membrane protein DUF6 [Bacillus anthracis A2012] ref|NP_843715.1| membrane protein, putative [Bacillus anthracis str. Ames] gb|AAP25201.1| membrane protein, putative [Bacillus anthracis str. Ames] Length = 303 Score = 227 bits (578), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 116/251 (46%), Positives = 162/251 (64%), Gaps = 1/251 (0%) Query: 28 IVAISFSAIFIKWSAAPASVQGMYRLLFTSLLMLPFARPYSGAAFALRRKDWXXXXXXXX 87 I+AISF+A+F+K S+AP+S+ MYRL L+MLP ++ KDW Sbjct: 15 IIAISFAAVFVKMSSAPSSILSMYRLWIIVLIMLPIVWKKREEFSKIQIKDWGFLIGSGF 74 Query: 88 XXXXHFLLWMGSLKYTSVASSTMIMALEPVFIMLGAYILYKDRSTXXXXXXXXXXXFGVV 147 HFLLW SLK+T+VASST+I+AL+P+ ++G + L+K+R+T GVV Sbjct: 75 FLALHFLLWFESLKHTTVASSTIILALQPIVSLVGGFFLFKERTTYSAIATMGIAILGVV 134 Query: 148 LIGWGDIGLSSDNLKGDLLSVGGTVTVAGHLLIGQKLVARMPSYLYSLIVFITAAVVFAI 207 IGWGD+GLS + GD+LS + V G+L IGQ V ++ ++YS VF A + + Sbjct: 135 CIGWGDLGLSEQAIYGDILSFLSVIAVVGYLFIGQTTVKKVSHWIYSFTVFAFAGIFMGM 194 Query: 208 YNLLAGIPFLDYPPREWGIFVLLAVVPTVFGHILFNWLLQFTSATTVSMNILGEPVGASI 267 YN++ +PF Y +W +F+LLAVVPTV H++ NWLL + +ATT+SM+ILGEPVGASI Sbjct: 195 YNIVLQVPFTGYTKWDWTVFLLLAVVPTV-SHVINNWLLNYVNATTISMSILGEPVGASI 253 Query: 268 LAFLLLGEQLT 278 LAF LLGE+L Sbjct: 254 LAFFLLGERLN 264 >ref|NP_243613.1| BH2747~unknown conserved protein in others [Bacillus halodurans] pir||C83993 hypothetical protein BH2747 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06466.1| BH2747~unknown conserved protein in others [Bacillus halodurans] Length = 302 Score = 226 bits (576), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 112/251 (44%), Positives = 160/251 (63%), Gaps = 1/251 (0%) Query: 28 IVAISFSAIFIKWSAAPASVQGMYRLLFTSLLMLPFARPYSGAAFALRRKDWXXXXXXXX 87 I+AISF+AIF+KWS APA++ MYR+ F L++P L + DW Sbjct: 18 IIAISFAAIFVKWSEAPATILSMYRMYFACFLLVPIVWGKRDEFKRLTKNDWLLFFGAGL 77 Query: 88 XXXXHFLLWMGSLKYTSVASSTMIMALEPVFIMLGAYILYKDRSTXXXXXXXXXXXFGVV 147 HF LW GSLK T+VASST+I+AL+P+ + +I +K+R++ G + Sbjct: 78 FLALHFALWFGSLKLTTVASSTIILALQPIVALSLGFIFFKERASRHILVTMAVAVLGAI 137 Query: 148 LIGWGDIGLSSDNLKGDLLSVGGTVTVAGHLLIGQKLVARMPSYLYSLIVFITAAVVFAI 207 ++GWGDIGLS + GDLLS + V +L+IGQ +V ++ ++YS VF AA++ I Sbjct: 138 MVGWGDIGLSQQAIIGDLLSFLSVIAVVCYLIIGQSVVKKVSHWIYSFSVFAFAALLLTI 197 Query: 208 YNLLAGIPFLDYPPREWGIFVLLAVVPTVFGHILFNWLLQFTSATTVSMNILGEPVGASI 267 YNL+ +PF Y +EWGIF+LLA+VPT+ H++ NWLL + +ATT+SM+ILGEPVGA+ Sbjct: 198 YNLITSVPFTGYDLQEWGIFLLLAIVPTI-AHVIHNWLLNYVNATTISMSILGEPVGATA 256 Query: 268 LAFLLLGEQLT 278 LA + LGE L Sbjct: 257 LAIVFLGESLN 267 >ref|NP_831011.1| Transporter, Drug/Metabolite Exporter family [Bacillus cereus ATCC 14579] gb|AAP08212.1| Transporter, Drug/Metabolite Exporter family [Bacillus cereus ATCC 14579] Length = 303 Score = 220 bits (560), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 113/251 (45%), Positives = 160/251 (63%), Gaps = 1/251 (0%) Query: 28 IVAISFSAIFIKWSAAPASVQGMYRLLFTSLLMLPFARPYSGAAFALRRKDWXXXXXXXX 87 I+AISF+A+F+K S+AP+S+ MYRL L+MLP ++ KDW Sbjct: 15 IIAISFAAVFVKMSSAPSSILSMYRLWIIVLIMLPIVWKKREEFNRIQMKDWGFLIGSGF 74 Query: 88 XXXXHFLLWMGSLKYTSVASSTMIMALEPVFIMLGAYILYKDRSTXXXXXXXXXXXFGVV 147 HFLLW SLK+T+VASST+I+AL+P+ ++G + L+K+R+T GV+ Sbjct: 75 FLALHFLLWFESLKHTTVASSTIILALQPIVSLVGGFFLFKERTTYSAIATMGIAILGVM 134 Query: 148 LIGWGDIGLSSDNLKGDLLSVGGTVTVAGHLLIGQKLVARMPSYLYSLIVFITAAVVFAI 207 IGWGD+GLS + GD+LS + V G+L IGQ V ++ ++YS VF A + I Sbjct: 135 CIGWGDLGLSKQAIYGDILSFLSVIAVVGYLFIGQTTVKKVSHWIYSFTVFAFAGLFMGI 194 Query: 208 YNLLAGIPFLDYPPREWGIFVLLAVVPTVFGHILFNWLLQFTSATTVSMNILGEPVGASI 267 YN++ +PF Y +W +F+LLA+VPTV H++ WLL + +AT +SM+ILGEPVGASI Sbjct: 195 YNVILQVPFTGYTRWDWTVFLLLAIVPTV-SHVINTWLLNYVNATPISMSILGEPVGASI 253 Query: 268 LAFLLLGEQLT 278 LAF LLGE+L Sbjct: 254 LAFCLLGEKLN 264 >ref|NP_954430.1| membrane protein, putative [Geobacter sulfurreducens PCA] gb|AAR36780.1| membrane protein, putative [Geobacter sulfurreducens PCA] Length = 302 Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 95/254 (37%), Positives = 149/254 (58%), Gaps = 3/254 (1%) Query: 27 GIVAISFSAIFIKWSAAPASVQGMYRLLFTSLLMLPF--ARPYSGAAFALRRKDWXXXXX 84 G+ A+SFSA+F++ + AP + YRLLFT LL+ P A +SG ++ R++ Sbjct: 20 GVFAVSFSALFVRLTTAPPLIIATYRLLFTFLLLAPATAASRFSGVR-SMSRREIALSAA 78 Query: 85 XXXXXXXHFLLWMGSLKYTSVASSTMIMALEPVFIMLGAYILYKDRSTXXXXXXXXXXXF 144 HF+ W SL YTSVASS +I+ ++PVF+++GA++ ++++ Sbjct: 79 SGVFLALHFVTWFTSLFYTSVASSVVIVTMQPVFVVVGAWLFFREKVPRLALLGGVVALC 138 Query: 145 GVVLIGWGDIGLSSDNLKGDLLSVGGTVTVAGHLLIGQKLVARMPSYLYSLIVFITAAVV 204 G ++IG GD L GDLL++ V V+G+LLIG+KL + Y+ + + +++V Sbjct: 139 GSIVIGAGDFQLGMRAFVGDLLALAAAVFVSGYLLIGRKLRGNVELSGYTFVTYGASSLV 198 Query: 205 FAIYNLLAGIPFLDYPPREWGIFVLLAVVPTVFGHILFNWLLQFTSATTVSMNILGEPVG 264 + L+ P YPP +W +F LA V TV GH +FNW+L++ A+ VS++ILGEP+G Sbjct: 199 LVSASFLSRTPCHPYPPLDWLLFFALAAVCTVLGHTVFNWVLRYVQASVVSVSILGEPIG 258 Query: 265 ASILAFLLLGEQLT 278 A + A L LGE T Sbjct: 259 AIVWASLFLGESPT 272 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.325 0.139 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 331,887,435 Number of extensions: 11383547 Number of successful extensions: 39879 Number of sequences better than 1.0e-05: 88 Number of HSP's gapped: 39904 Number of HSP's successfully gapped: 89 Length of query: 314 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 189 Effective length of database: 417,850,203 Effective search space: 78973688367 Effective search space used: 78973688367 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 126 (53.1 bits)