BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0046.p (166 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243107.1| BH2241~unknown conserved protein [Bacillus halo... 296 1e-79 ref|NP_371252.1| conserved hypothetical protein [Staphylococcus ... 293 1e-78 ref|NP_764065.1| conserved hypothetical protein [Staphylococcus ... 292 2e-78 ref|NP_831125.1| GTP cyclohydrolase I [Bacillus cereus ATCC 1457... 292 2e-78 ref|NP_655246.1| hypothetical protein predicted by GeneMark [Bac... 291 4e-78 >ref|NP_243107.1| BH2241~unknown conserved protein [Bacillus halodurans] pir||A83930 hypothetical protein BH2241 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05960.1| BH2241~unknown conserved protein [Bacillus halodurans] Length = 165 Score = 296 bits (757), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 137/163 (84%), Positives = 151/163 (92%) Query: 4 GRLKEEMQEVTLLGNQGTTYTFGYDPDILEVFDNKHPGRDYFVKFNCPEFTSLCPVTGQP 63 GR +EE++ VTLLGNQGTTYTF Y+PDILEVF+NKH GRDYFVKFNCPEFT+LCP+TGQP Sbjct: 3 GRKEEELEGVTLLGNQGTTYTFDYNPDILEVFENKHQGRDYFVKFNCPEFTTLCPMTGQP 62 Query: 64 DFGAMYISYIPDHKMVESKSLKLYLFSFRNHGDFHEDCVNIIMNDLISLMEPRYIEVWGK 123 DF +YISYIPD KMVESKSLKLYLFSFRNHGDFHED +NIIMNDLI LM+PRYIEVWGK Sbjct: 63 DFATVYISYIPDVKMVESKSLKLYLFSFRNHGDFHEDAMNIIMNDLIKLMDPRYIEVWGK 122 Query: 124 FTPRGGISIDPYCNWGRPGTKYEAMAEHRLINHDLYPEKVDNR 166 FTPRGGISIDPY N+GRPGTKYE MAE+R++NHDLYPE VDNR Sbjct: 123 FTPRGGISIDPYTNYGRPGTKYEKMAEYRMMNHDLYPETVDNR 165 >ref|NP_371252.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] ref|NP_373938.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] ref|NP_645507.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] pir||A89845 conserved hypothetical protein SA0683 [imported] - Staphylococcus aureus (strain N315) dbj|BAB41916.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] dbj|BAB56890.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] dbj|BAB94555.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] Length = 166 Score = 293 bits (750), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 133/166 (80%), Positives = 149/166 (89%) Query: 1 MSEGRLKEEMQEVTLLGNQGTTYTFGYDPDILEVFDNKHPGRDYFVKFNCPEFTSLCPVT 60 M+ GR ++E+Q++TLLGNQ TY F Y PD+LE FDNKH GRDYFVKFNCPEFTSLCP+T Sbjct: 1 MAHGRQQDELQDITLLGNQDNTYNFDYRPDVLESFDNKHQGRDYFVKFNCPEFTSLCPIT 60 Query: 61 GQPDFGAMYISYIPDHKMVESKSLKLYLFSFRNHGDFHEDCVNIIMNDLISLMEPRYIEV 120 GQPDF +YISYIP+ KMVESKSLKLYLFSFRNHGDFHEDC+NIIMNDLI LM+P YIEV Sbjct: 61 GQPDFATIYISYIPNVKMVESKSLKLYLFSFRNHGDFHEDCMNIIMNDLIELMDPHYIEV 120 Query: 121 WGKFTPRGGISIDPYCNWGRPGTKYEAMAEHRLINHDLYPEKVDNR 166 WGKFTPRGGISIDPY N+GRP +KYE MAEHRL+NHDLYPEK+DNR Sbjct: 121 WGKFTPRGGISIDPYTNYGRPNSKYEKMAEHRLMNHDLYPEKIDNR 166 >ref|NP_764065.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gb|AAO04107.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] Length = 166 Score = 292 bits (748), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 132/166 (79%), Positives = 151/166 (90%) Query: 1 MSEGRLKEEMQEVTLLGNQGTTYTFGYDPDILEVFDNKHPGRDYFVKFNCPEFTSLCPVT 60 M++GR K+E++++TLLGNQ TY F Y P++LE FDNKH GRDYFVKFNCPEFTSLCP+T Sbjct: 1 MTQGRQKDELKDITLLGNQNNTYEFDYRPEVLETFDNKHQGRDYFVKFNCPEFTSLCPIT 60 Query: 61 GQPDFGAMYISYIPDHKMVESKSLKLYLFSFRNHGDFHEDCVNIIMNDLISLMEPRYIEV 120 GQPDF +YISYIP+ KMVESKSLKLYLFSFRNHGDFHEDC+NIIMNDLI+LM+P YIEV Sbjct: 61 GQPDFATIYISYIPNIKMVESKSLKLYLFSFRNHGDFHEDCMNIIMNDLINLMDPHYIEV 120 Query: 121 WGKFTPRGGISIDPYCNWGRPGTKYEAMAEHRLINHDLYPEKVDNR 166 WGKFTPRGGISIDPY N+GRP TKYE MAEHRL+NHD+YPEK+DNR Sbjct: 121 WGKFTPRGGISIDPYTNYGRPDTKYEKMAEHRLMNHDMYPEKIDNR 166 >ref|NP_831125.1| GTP cyclohydrolase I [Bacillus cereus ATCC 14579] gb|AAP08326.1| GTP cyclohydrolase I [Bacillus cereus ATCC 14579] Length = 165 Score = 292 bits (747), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 132/163 (80%), Positives = 148/163 (90%) Query: 4 GRLKEEMQEVTLLGNQGTTYTFGYDPDILEVFDNKHPGRDYFVKFNCPEFTSLCPVTGQP 63 GRL E++++VTLLGNQ T Y F Y P+ILEVFDN HP RDYFVKFNCPEFTSLCP TGQP Sbjct: 3 GRLDEDLKDVTLLGNQNTKYLFEYSPEILEVFDNNHPNRDYFVKFNCPEFTSLCPKTGQP 62 Query: 64 DFGAMYISYIPDHKMVESKSLKLYLFSFRNHGDFHEDCVNIIMNDLISLMEPRYIEVWGK 123 DF +YISYIP+ KMVESKSLKLYLFSFRNHGDFHEDC+N+IMNDLI LM+PRYIEVWGK Sbjct: 63 DFATIYISYIPEQKMVESKSLKLYLFSFRNHGDFHEDCMNVIMNDLIKLMDPRYIEVWGK 122 Query: 124 FTPRGGISIDPYCNWGRPGTKYEAMAEHRLINHDLYPEKVDNR 166 FTPRGGISIDPYCN+GRPGTKYE MA++R++NHDLYPE +DNR Sbjct: 123 FTPRGGISIDPYCNYGRPGTKYEQMADYRMMNHDLYPETIDNR 165 >ref|NP_655246.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_843820.1| conserved hypothetical protein [Bacillus anthracis str. Ames] ref|NP_977782.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAP25306.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAS40390.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 165 Score = 291 bits (744), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 131/163 (80%), Positives = 148/163 (90%) Query: 4 GRLKEEMQEVTLLGNQGTTYTFGYDPDILEVFDNKHPGRDYFVKFNCPEFTSLCPVTGQP 63 GRL E++++VTLLGNQ T Y F Y P+ILEVFDN HP RDYFVKFNCPEFTSLCP TGQP Sbjct: 3 GRLDEDLKDVTLLGNQNTKYLFEYSPEILEVFDNNHPNRDYFVKFNCPEFTSLCPKTGQP 62 Query: 64 DFGAMYISYIPDHKMVESKSLKLYLFSFRNHGDFHEDCVNIIMNDLISLMEPRYIEVWGK 123 DF +YISYIP+ +MVESKSLKLYLFSFRNHGDFHEDC+N+IMNDLI LM+PRYIEVWGK Sbjct: 63 DFATIYISYIPEQRMVESKSLKLYLFSFRNHGDFHEDCMNVIMNDLIKLMDPRYIEVWGK 122 Query: 124 FTPRGGISIDPYCNWGRPGTKYEAMAEHRLINHDLYPEKVDNR 166 FTPRGGISIDPYCN+GRPGTKYE MA++R++NHDLYPE +DNR Sbjct: 123 FTPRGGISIDPYCNYGRPGTKYEQMADYRMMNHDLYPETIDNR 165 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.142 0.454 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 288,209,937 Number of extensions: 12383491 Number of successful extensions: 20752 Number of sequences better than 1.0e-05: 242 Number of HSP's gapped: 20642 Number of HSP's successfully gapped: 242 Length of query: 166 Length of database: 757,237,578 Length adjustment: 116 Effective length of query: 50 Effective length of database: 442,286,094 Effective search space: 22114304700 Effective search space used: 22114304700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 121 (51.2 bits)