BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0523.0045.p
         (111 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB13608.2| ymzB [Bacillus subtilis subsp. subtilis str. 168]      58   8e-08
ref|NP_242650.1| BH1784~unknown conserved protein in B. subtilis...    51   7e-06

>emb|CAB13608.2| ymzB [Bacillus subtilis subsp. subtilis str. 168]
          Length = 118

 Score = 57.8 bits (138), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 9/109 (8%)

Query: 7   KLMDWLTAQAGETIMIKK------QEMNDLDTVHFNLETVDYRNTEDVIDEYLDSALILR 60
           +L  WL ++ G+T+ I+K      +E++DLD +  +L+ V  R+T    D      L+L 
Sbjct: 7   QLSQWLESKVGQTLDIRKGELTHDEEISDLDQIVLHLQKVAIRSTNHPDDYVAKEELVLE 66

Query: 61  GTGNTLNRDGELVPLPQQNYEIAVSG-LQLDNADDGQVELRTERAKYSI 108
           G G T   DG  VP PQ  YEI + G L +   ++G +++ T+RA Y+I
Sbjct: 67  GEGTTFTEDGN-VPRPQNAYEIPLLGELHIHQENEG-LKVVTDRAVYTI 113


>ref|NP_242650.1| BH1784~unknown conserved protein in B. subtilis [Bacillus
           halodurans]
 pir||H83872 hypothetical protein BH1784 [imported] - Bacillus halodurans
           (strain C-125)
 dbj|BAB05503.1| BH1784~unknown conserved protein in B. subtilis [Bacillus
           halodurans]
          Length = 120

 Score = 51.2 bits (121), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 9/109 (8%)

Query: 7   KLMDWLTAQAGETIMIKKQE-------MNDLDTVHFNLETVDYRNTEDV-IDEYL-DSAL 57
           +L DWL A   + +MI KQE       + D D V   LE V + ++E+  +D Y+ +  L
Sbjct: 6   QLTDWLEAHKDQKLMISKQEYATGMASITDSDQVSMTLEAVTFIDSENRDLDGYVANHEL 65

Query: 58  ILRGTGNTLNRDGELVPLPQQNYEIAVSGLQLDNADDGQVELRTERAKY 106
           +L G G+    +    PLP   ++I +      +AD  Q+ + T RAKY
Sbjct: 66  VLHGEGSIQGSEHATGPLPDHRFDIQLEDGMTISADGNQLIVETSRAKY 114


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.313    0.132    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 161,469,444
Number of extensions: 6192835
Number of successful extensions: 12527
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 12527
Number of HSP's successfully gapped: 2
Length of query: 111
Length of database: 757,237,578
Length adjustment: 77
Effective length of query: 34
Effective length of database: 548,174,955
Effective search space: 18637948470
Effective search space used: 18637948470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 120 (50.8 bits)