BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0523.0043.p
         (73 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_465484.1| similar to ferrichrome ABC transporter (ATP-bin...   104   7e-22
ref|NP_471408.1| similar to ferrichrome ABC transporter (ATP-bin...   102   2e-21
ref|ZP_00018283.1| hypothetical protein [Chloroflexus aurantiacus]     96   3e-19
ref|NP_835042.1| Ferrichrome transport ATP-binding protein fhuC ...    89   3e-17
ref|NP_981802.1| iron compound ABC transporter, ATP-binding prot...    89   4e-17

>ref|NP_465484.1| similar to ferrichrome ABC transporter (ATP-binding protein)
           [Listeria monocytogenes EGD-e]
 pir||AH1319 ferrichrome ABC transporter (ATP-binding protein) homolog fhuC
           [imported] - Listeria monocytogenes (strain EGD-e)
 emb|CAD00038.1| fhuC [Listeria monocytogenes]
          Length = 274

 Score =  104 bits (259), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 46/64 (71%), Positives = 53/64 (82%)

Query: 1   MVVHDLNHASRYAQHMVAIKSGSVISEGAPSEVMTSGVLREVFGIEADIVPDPRTGVPLC 60
           MVVHDLNHASRYA HM+AIK G VI+EG P+ VMT   L +VF I+ADI+ DPR+GVPLC
Sbjct: 195 MVVHDLNHASRYAHHMIAIKEGKVIAEGTPTSVMTEQTLEDVFNIKADILIDPRSGVPLC 254

Query: 61  LPYE 64
           LPYE
Sbjct: 255 LPYE 258


>ref|NP_471408.1| similar to ferrichrome ABC transporter (ATP-binding protein)
           [Listeria innocua]
 pir||AH1691 ferrichrome ABC transporter (ATP-binding protein) homolog fhuC
           [imported] - Listeria innocua (strain Clip11262)
 emb|CAC97304.1| fhuC [Listeria innocua]
          Length = 274

 Score =  102 bits (255), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/64 (70%), Positives = 53/64 (82%)

Query: 1   MVVHDLNHASRYAQHMVAIKSGSVISEGAPSEVMTSGVLREVFGIEADIVPDPRTGVPLC 60
           MVVHDLNHASRYA HM+AIK G V++EG+P  VMT   L +VF I+ADI+ DPR+GVPLC
Sbjct: 195 MVVHDLNHASRYAHHMIAIKEGKVVAEGSPVNVMTEETLEDVFNIKADILIDPRSGVPLC 254

Query: 61  LPYE 64
           LPYE
Sbjct: 255 LPYE 258


>ref|ZP_00018283.1| hypothetical protein [Chloroflexus aurantiacus]
          Length = 223

 Score = 95.5 bits (236), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 56/66 (84%)

Query: 1   MVVHDLNHASRYAQHMVAIKSGSVISEGAPSEVMTSGVLREVFGIEADIVPDPRTGVPLC 60
           MVVHDLNHA+R+A H++A+K+G V + GAP+EV+T  +LREVFG+E  +VPDPR+GVPLC
Sbjct: 132 MVVHDLNHATRHAHHIIALKAGKVAAIGAPTEVVTPALLREVFGVEGAVVPDPRSGVPLC 191

Query: 61  LPYELA 66
           + Y +A
Sbjct: 192 IAYGIA 197


>ref|NP_835042.1| Ferrichrome transport ATP-binding protein fhuC [Bacillus cereus
           ATCC 14579]
 gb|AAP12243.1| Ferrichrome transport ATP-binding protein fhuC [Bacillus cereus
           ATCC 14579]
          Length = 270

 Score = 89.0 bits (219), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 51/69 (73%)

Query: 1   MVVHDLNHASRYAQHMVAIKSGSVISEGAPSEVMTSGVLREVFGIEADIVPDPRTGVPLC 60
           MV+HDLNHASR++ HM+A+K+G ++ +G P EVMTS  LR VF IEA IVP P    P+C
Sbjct: 195 MVIHDLNHASRFSDHMIALKAGKLMKQGTPDEVMTSETLRNVFEIEAQIVPCPVNCKPIC 254

Query: 61  LPYELAAYS 69
           L Y+LA  S
Sbjct: 255 LTYDLAMIS 263


>ref|NP_981802.1| iron compound ABC transporter, ATP-binding protein [Bacillus cereus
           ATCC 10987]
 gb|AAS44410.1| iron compound ABC transporter, ATP-binding protein [Bacillus cereus
           ATCC 10987]
          Length = 270

 Score = 88.6 bits (218), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 51/69 (73%)

Query: 1   MVVHDLNHASRYAQHMVAIKSGSVISEGAPSEVMTSGVLREVFGIEADIVPDPRTGVPLC 60
           MV+HDLNHASR++ HM+A+K+G ++ +G P EVMTS  LR VF IEA IVP P    P+C
Sbjct: 195 MVIHDLNHASRFSDHMIALKAGKLMKQGTPDEVMTSETLRSVFEIEAQIVPCPVNCKPIC 254

Query: 61  LPYELAAYS 69
           L Y+LA  S
Sbjct: 255 LTYDLAMIS 263


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 103,904,391
Number of extensions: 3403239
Number of successful extensions: 12390
Number of sequences better than 1.0e-05: 163
Number of HSP's gapped: 12406
Number of HSP's successfully gapped: 163
Length of query: 73
Length of database: 757,237,578
Length adjustment: 44
Effective length of query: 29
Effective length of database: 637,773,222
Effective search space: 18495423438
Effective search space used: 18495423438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)