BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0042.p (202 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_471408.1| similar to ferrichrome ABC transporter (ATP-bin... 187 9e-47 ref|NP_465484.1| similar to ferrichrome ABC transporter (ATP-bin... 185 4e-46 ref|NP_391210.1| ferrichrome ABC transporter (ATP-binding protei... 181 8e-45 ref|NP_241947.1| ferrichrome ABC transporter (ATP-binding protei... 170 2e-41 ref|NP_763976.1| ferrichrome transport ATP-binding protein [Stap... 169 2e-41 >ref|NP_471408.1| similar to ferrichrome ABC transporter (ATP-binding protein) [Listeria innocua] pir||AH1691 ferrichrome ABC transporter (ATP-binding protein) homolog fhuC [imported] - Listeria innocua (strain Clip11262) emb|CAC97304.1| fhuC [Listeria innocua] Length = 274 Score = 187 bits (476), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 88/140 (62%), Positives = 110/140 (78%) Query: 8 LNTEQLSIGYAEAMIVKGLNLSLPTGKITALVGANGSGKSTILKTMARIMKPKSGSVMLD 67 L+T+ L I Y + +IV GL++++P KITALVGANGSGKSTILKTM+R+MKP G+V LD Sbjct: 4 LHTDNLQISYDKRIIVDGLDIAIPANKITALVGANGSGKSTILKTMSRLMKPSKGAVYLD 63 Query: 68 GKSIHNLSTKEVARQLAILPQNPTAPDGLTVSELVGYGRYPHQKGFGTLTPEDRSIIANA 127 GK IHN T+E+A+QLAILPQNP+APDGLTV EL+ YGR PHQ F ++T +DR II + Sbjct: 64 GKKIHNEPTREIAKQLAILPQNPSAPDGLTVFELISYGRSPHQSSFKSITAKDREIIFWS 123 Query: 128 ITVTGMEAFHDRPIDRLSGG 147 + VT + F DRPID LSGG Sbjct: 124 LRVTNLTEFADRPIDSLSGG 143 >ref|NP_465484.1| similar to ferrichrome ABC transporter (ATP-binding protein) [Listeria monocytogenes EGD-e] pir||AH1319 ferrichrome ABC transporter (ATP-binding protein) homolog fhuC [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00038.1| fhuC [Listeria monocytogenes] Length = 274 Score = 185 bits (470), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 87/140 (62%), Positives = 111/140 (79%) Query: 8 LNTEQLSIGYAEAMIVKGLNLSLPTGKITALVGANGSGKSTILKTMARIMKPKSGSVMLD 67 L+T+ L I Y + +IV GL++++P KITALVGANGSGKSTILKTM+R+MKP G+V LD Sbjct: 4 LHTDNLQISYDKRIIVDGLDIAIPANKITALVGANGSGKSTILKTMSRLMKPSKGAVYLD 63 Query: 68 GKSIHNLSTKEVARQLAILPQNPTAPDGLTVSELVGYGRYPHQKGFGTLTPEDRSIIANA 127 GK+IH+ T++VA+QLAILPQNP+APDGLTV EL+ YGR PHQ F ++T +DR II + Sbjct: 64 GKTIHSQPTRDVAKQLAILPQNPSAPDGLTVFELISYGRSPHQSSFKSITAKDREIIFWS 123 Query: 128 ITVTGMEAFHDRPIDRLSGG 147 + VT + F DRPID LSGG Sbjct: 124 LRVTNLTEFADRPIDSLSGG 143 >ref|NP_391210.1| ferrichrome ABC transporter (ATP-binding protein) [Bacillus subtilis] sp|P49938|FHUC_BACSU Ferrichrome transport ATP-binding protein fhuC pir||B69622 ferrichrome ABC transporter (ATP-binding protein) fhuC - Bacillus subtilis emb|CAA63645.1| fhuC [Bacillus subtilis] emb|CAB15335.1| ferrichrome ABC transporter (ATP-binding protein) [Bacillus subtilis subsp. subtilis str. 168] emb|CAA11722.1| ferrichrome transport protein, FhuC [Bacillus subtilis] Length = 269 Score = 181 bits (459), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 86/140 (61%), Positives = 109/140 (77%) Query: 8 LNTEQLSIGYAEAMIVKGLNLSLPTGKITALVGANGSGKSTILKTMARIMKPKSGSVMLD 67 L+TEQL IGY + +IV+ LN+S+P GKIT L+G NG GKSTILKTM+RIM+ +G+V L+ Sbjct: 4 LSTEQLGIGYGDRVIVEDLNISIPKGKITTLIGPNGCGKSTILKTMSRIMRSHAGAVYLN 63 Query: 68 GKSIHNLSTKEVARQLAILPQNPTAPDGLTVSELVGYGRYPHQKGFGTLTPEDRSIIANA 127 GK+IH +STK++A+ +AILPQ P AP GLTV ELV YGR+PHQ GFG L EDR II A Sbjct: 64 GKAIHKMSTKDIAKDMAILPQTPEAPSGLTVHELVSYGRFPHQSGFGRLNDEDRRIIKWA 123 Query: 128 ITVTGMEAFHDRPIDRLSGG 147 + TGM + +RPI+ LSGG Sbjct: 124 LEETGMAEYAERPIEALSGG 143 >ref|NP_241947.1| ferrichrome ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||A83785 ferrichrome ABC transporter (ATP-binding protein) fhuC [imported] - Bacillus halodurans (strain C-125) dbj|BAB04800.1| ferrichrome ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 274 Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 80/140 (57%), Positives = 103/140 (73%) Query: 8 LNTEQLSIGYAEAMIVKGLNLSLPTGKITALVGANGSGKSTILKTMARIMKPKSGSVMLD 67 + TE LSIGY + IV+ LN+++P GKIT ++GANG GKSTILKT++RI P+SG LD Sbjct: 4 IYTESLSIGYGDTKIVEDLNIAIPEGKITTIIGANGCGKSTILKTISRIHAPQSGVAYLD 63 Query: 68 GKSIHNLSTKEVARQLAILPQNPTAPDGLTVSELVGYGRYPHQKGFGTLTPEDRSIIANA 127 GK+IH T+++A+++AILPQ P +P LTV ELV YGR+PHQKGFG LT D I+ A Sbjct: 64 GKAIHKQKTRDIAKKMAILPQTPESPGELTVYELVSYGRFPHQKGFGRLTEADHQIVEKA 123 Query: 128 ITVTGMEAFHDRPIDRLSGG 147 + TG+E F RPI LSGG Sbjct: 124 LHSTGLEEFRHRPIQALSGG 143 >ref|NP_763976.1| ferrichrome transport ATP-binding protein [Staphylococcus epidermidis ATCC 12228] gb|AAO04018.1| ferrichrome transport ATP-binding protein [Staphylococcus epidermidis ATCC 12228] Length = 265 Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 78/141 (55%), Positives = 107/141 (75%) Query: 7 RLNTEQLSIGYAEAMIVKGLNLSLPTGKITALVGANGSGKSTILKTMARIMKPKSGSVML 66 RL+ EQ+ IGY ++ I+ L++++P GK+T+++G NG GKST+LK ++R++ K G + L Sbjct: 3 RLSGEQVKIGYGDSTIINNLDVAIPDGKVTSIIGPNGCGKSTLLKALSRLLSIKEGKINL 62 Query: 67 DGKSIHNLSTKEVARQLAILPQNPTAPDGLTVSELVGYGRYPHQKGFGTLTPEDRSIIAN 126 DGKSIH STKE+A+++AILPQ+P PDGLTV ELV YGR+PHQKGFG LT ED+ I Sbjct: 63 DGKSIHATSTKEIAKKIAILPQSPEVPDGLTVGELVSYGRFPHQKGFGRLTAEDKKEIDW 122 Query: 127 AITVTGMEAFHDRPIDRLSGG 147 A++VTG F R I+ LSGG Sbjct: 123 ALSVTGTSEFRHRTINDLSGG 143 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.313 0.132 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 304,775,548 Number of extensions: 12343947 Number of successful extensions: 64222 Number of sequences better than 1.0e-05: 4986 Number of HSP's gapped: 64854 Number of HSP's successfully gapped: 5157 Length of query: 202 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 82 Effective length of database: 431,425,698 Effective search space: 35376907236 Effective search space used: 35376907236 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 123 (52.0 bits)