BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0027.p (140 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_653856.1| hypothetical protein predicted by GeneMark [Bac... 181 5e-45 ref|NP_835051.1| Cell wall hydrolase cwlJ [Bacillus cereus ATCC ... 180 8e-45 ref|NP_981811.1| cell wall hydrolase [Bacillus cereus ATCC 10987... 177 5e-44 ref|NP_693946.1| cell wall hydrolase [Oceanobacillus iheyensis H... 170 7e-42 ref|NP_244693.1| cell wall hydrolase (sporulation) [Bacillus hal... 152 2e-36 >ref|NP_653856.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_847789.1| cell wall hydrolase [Bacillus anthracis str. Ames] gb|AAP29275.1| cell wall hydrolase [Bacillus anthracis str. Ames] Length = 140 Score = 181 bits (459), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 83/140 (59%), Positives = 98/140 (70%) Query: 1 VAVIKANTADVRTXXXXXXXXXXXXXXXXXXXVGNVGVNRILGNCLDFRNIRNVNDMVFQ 60 + VI N ADV+ VGNVGVNR+ GNCLDF+ IRN+ MV+Q Sbjct: 1 MGVIAYNEADVKLLARLMRAEAEGEGQQGMLMVGNVGVNRVRGNCLDFKKIRNLRQMVYQ 60 Query: 61 SPGGFEAPQKSYFYQRARESDIRLARRAIGGEKTWPASNALWFFRPVGECPATWFDQQNT 120 +PGGFEA QK YFYQRARE DI LARR I G++ WPA+ ALWFFRP G CP TW++QQN+ Sbjct: 61 NPGGFEATQKGYFYQRAREQDIALARRTIQGQRFWPANFALWFFRPEGPCPPTWYNQQNS 120 Query: 121 GRFKAHCFFTPSSEDCPAVF 140 GRFK HCFF PS EDCP+V+ Sbjct: 121 GRFKKHCFFQPSGEDCPSVY 140 >ref|NP_835051.1| Cell wall hydrolase cwlJ [Bacillus cereus ATCC 14579] gb|AAP12252.1| Cell wall hydrolase cwlJ [Bacillus cereus ATCC 14579] Length = 140 Score = 180 bits (457), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 83/140 (59%), Positives = 97/140 (69%) Query: 1 VAVIKANTADVRTXXXXXXXXXXXXXXXXXXXVGNVGVNRILGNCLDFRNIRNVNDMVFQ 60 + VI N DV+ VGNVGVNR+ GNCLDFR IRN+ MV+Q Sbjct: 1 MGVIAYNEEDVKLLARLMRAEAEGEGQQGMLMVGNVGVNRVRGNCLDFRKIRNLRQMVYQ 60 Query: 61 SPGGFEAPQKSYFYQRARESDIRLARRAIGGEKTWPASNALWFFRPVGECPATWFDQQNT 120 +PGGFEA QK YFYQRARE DI LARR I G++ WPA+ ALWFFRP G CP TW++QQN+ Sbjct: 61 NPGGFEATQKGYFYQRAREQDIALARRTIQGQRFWPANFALWFFRPEGPCPPTWYNQQNS 120 Query: 121 GRFKAHCFFTPSSEDCPAVF 140 GRFK HCFF PS EDCP+V+ Sbjct: 121 GRFKKHCFFQPSGEDCPSVY 140 >ref|NP_981811.1| cell wall hydrolase [Bacillus cereus ATCC 10987] gb|AAS44419.1| cell wall hydrolase [Bacillus cereus ATCC 10987] Length = 140 Score = 177 bits (450), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 80/140 (57%), Positives = 98/140 (70%) Query: 1 VAVIKANTADVRTXXXXXXXXXXXXXXXXXXXVGNVGVNRILGNCLDFRNIRNVNDMVFQ 60 + VI N DV+ VGNVGVNR+ GNCLDF+NIRN+ MV+Q Sbjct: 1 MGVIAHNEEDVKLLARLMRAEAEGEGQQGMLMVGNVGVNRVRGNCLDFKNIRNLRQMVYQ 60 Query: 61 SPGGFEAPQKSYFYQRARESDIRLARRAIGGEKTWPASNALWFFRPVGECPATWFDQQNT 120 +PGGFEA QK YFYQRARE DI LARR I G++ WPA+ ALWFFRP G CP TW++QQN+ Sbjct: 61 NPGGFEATQKGYFYQRAREQDIALARRTIQGQRFWPANFALWFFRPEGACPPTWYNQQNS 120 Query: 121 GRFKAHCFFTPSSEDCPAVF 140 GRFK HCFF P++ DCP+++ Sbjct: 121 GRFKKHCFFQPNAGDCPSIY 140 >ref|NP_693946.1| cell wall hydrolase [Oceanobacillus iheyensis HTE831] sp|P59104|CWLJ_OCEIH Cell wall hydrolase cwlJ dbj|BAC14980.1| cell wall hydrolase (sporulation, N-acetylmuramoyl-L-alanine amidase, peptidoglycan hydrolase) [Oceanobacillus iheyensis HTE831] Length = 141 Score = 170 bits (431), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 76/140 (54%), Positives = 95/140 (67%) Query: 1 VAVIKANTADVRTXXXXXXXXXXXXXXXXXXXVGNVGVNRILGNCLDFRNIRNVNDMVFQ 60 +AV+K N A+V VGN G+NR++ +CLDF NIR + +MV+Q Sbjct: 1 MAVVKHNEAEVELLARLMRAEAEGDGDLGMLMVGNTGINRVIASCLDFPNIRTITNMVYQ 60 Query: 61 SPGGFEAPQKSYFYQRARESDIRLARRAIGGEKTWPASNALWFFRPVGECPATWFDQQNT 120 SPGGFEA QK YFYQRAR+S+IRLARR I GE+ PASN+LWFF P G CP W+ Q N Sbjct: 61 SPGGFEATQKGYFYQRARQSEIRLARRVIQGERQHPASNSLWFFMPEGACPEQWYGQWNV 120 Query: 121 GRFKAHCFFTPSSEDCPAVF 140 GR+KAHCF+ P++ DCP VF Sbjct: 121 GRYKAHCFYAPTAADCPEVF 140 >ref|NP_244693.1| cell wall hydrolase (sporulation) [Bacillus halodurans] sp|Q9K6A3|CWLJ_BACHD Cell wall hydrolase cwlJ pir||B84128 cell wall hydrolase (sporulation) cwlJ [imported] - Bacillus halodurans (strain C-125) dbj|BAB07545.1| cell wall hydrolase (sporulation) [Bacillus halodurans] Length = 143 Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 72/140 (51%), Positives = 88/140 (62%) Query: 1 VAVIKANTADVRTXXXXXXXXXXXXXXXXXXXVGNVGVNRILGNCLDFRNIRNVNDMVFQ 60 +AVI+ + D+ GNV VNR+ CLDF +I V MVFQ Sbjct: 1 MAVIRTTSRDIDLLARLMRAEAEGEGDLGMLMAGNVMVNRVRVGCLDFADINTVERMVFQ 60 Query: 61 SPGGFEAPQKSYFYQRARESDIRLARRAIGGEKTWPASNALWFFRPVGECPATWFDQQNT 120 SPGGFEA QK YFYQRARE + RLA+R + GE+T PA +LWFFRP G CP W+ Q N+ Sbjct: 61 SPGGFEATQKGYFYQRAREKERRLAQRIVNGERTHPAEFSLWFFRPDGPCPEQWYGQWNS 120 Query: 121 GRFKAHCFFTPSSEDCPAVF 140 GR+KAHCFF P+S DCP V+ Sbjct: 121 GRYKAHCFFNPTSADCPEVY 140 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.324 0.138 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 183,301,393 Number of extensions: 6868648 Number of successful extensions: 13058 Number of sequences better than 1.0e-05: 9 Number of HSP's gapped: 13057 Number of HSP's successfully gapped: 9 Length of query: 140 Length of database: 757,237,578 Length adjustment: 101 Effective length of query: 39 Effective length of database: 483,012,579 Effective search space: 18837490581 Effective search space used: 18837490581 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 120 (50.8 bits)