BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0523.0019.p
         (55 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EAA61366.1| hypothetical protein AN7315.2 [Aspergillus nidula...    64   8e-10
ref|ZP_00017928.1| hypothetical protein [Chloroflexus aurantiacus]     60   2e-08
ref|NP_231381.1| succinate-semialdehyde dehydrogenase [Vibrio ch...    60   2e-08
ref|NP_767447.1| succinate-semialdehyde dehydrogenase [Bradyrhiz...    59   2e-08
ref|NP_356407.1| AGR_L_1228p [Agrobacterium tumefaciens] >gi|179...    59   3e-08

>gb|EAA61366.1| hypothetical protein AN7315.2 [Aspergillus nidulans FGSC A4]
          Length = 492

 Score = 64.3 bits (155), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 39/51 (76%)

Query: 5   LEAGNIGINGTSLAYLQSPFGGVKESGIGREGGRQGLEEYTVLKYVAMTIS 55
           LE G +GIN  +L+  +SPFGGVKESG GREGGRQG+EEY  +K + M ++
Sbjct: 441 LEVGMVGINMGTLSAAESPFGGVKESGYGREGGRQGIEEYMTVKSILMNVA 491


>ref|ZP_00017928.1| hypothetical protein [Chloroflexus aurantiacus]
          Length = 486

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/54 (55%), Positives = 39/54 (72%)

Query: 1   MISGLEAGNIGINGTSLAYLQSPFGGVKESGIGREGGRQGLEEYTVLKYVAMTI 54
           +  GLE G IGIN    +  Q+PFGGVK+SGIGREGG  G++EY  +KYV++ I
Sbjct: 433 LAEGLEYGIIGINDPIPSTAQAPFGGVKQSGIGREGGPTGIDEYLDIKYVSIGI 486


>ref|NP_231381.1| succinate-semialdehyde dehydrogenase [Vibrio cholerae O1 biovar
           eltor str. N16961]
 pir||E82161 succinate-semialdehyde dehydrogenase VC1745 [imported] - Vibrio
           cholerae (strain N16961 serogroup O1)
 gb|AAF94895.1| succinate-semialdehyde dehydrogenase [Vibrio cholerae O1 biovar
           eltor str. N16961]
          Length = 488

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 36/52 (69%)

Query: 1   MISGLEAGNIGINGTSLAYLQSPFGGVKESGIGREGGRQGLEEYTVLKYVAM 52
           M   LEAG +GIN   ++   +PFGG+KESG+GREG + GLEEY  +KY  M
Sbjct: 433 MSEALEAGIVGINEGLISTTLAPFGGIKESGLGREGAKHGLEEYLEVKYTLM 484


>ref|NP_767447.1| succinate-semialdehyde dehydrogenase [Bradyrhizobium japonicum]
 dbj|BAC46072.1| succinate-semialdehyde dehydrogenase [Bradyrhizobium japonicum USDA
           110]
          Length = 497

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 35/49 (71%)

Query: 4   GLEAGNIGINGTSLAYLQSPFGGVKESGIGREGGRQGLEEYTVLKYVAM 52
            LE+G +G+N   +    +PFGGVKESG+GREG R G+EEY  +KYV M
Sbjct: 446 ALESGMVGVNTGLITTEVAPFGGVKESGLGREGSRHGMEEYVEIKYVMM 494


>ref|NP_356407.1| AGR_L_1228p [Agrobacterium tumefaciens]
 ref|NP_534725.1| aldehyde dehydrogenase [Agrobacterium tumefaciens str. C58 (U.
           Washington)]
 pir||F98208 succinate-semialdehyde dehydrogenase PA0265 [imported] -
           Agrobacterium tumefaciens (strain C58, Cereon)
 pir||AC3078 aldehyde dehydrogenase attK [imported] - Agrobacterium tumefaciens
           (strain C58, Dupont)
 gb|AAK89192.1| AGR_L_1228p [Agrobacterium tumefaciens str. C58 (Cereon)]
 gb|AAL45041.1| aldehyde dehydrogenase [Agrobacterium tumefaciens str. C58 (U.
           Washington)]
          Length = 484

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 37/49 (75%)

Query: 4   GLEAGNIGINGTSLAYLQSPFGGVKESGIGREGGRQGLEEYTVLKYVAM 52
            LE G +G+N  +++  ++PFGGVK SG+GREG R G+EEYT LKYV +
Sbjct: 432 ALEYGMVGVNTGAISTAEAPFGGVKMSGLGREGSRHGIEEYTELKYVCI 480


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.313    0.137    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 82,777,528
Number of extensions: 2605616
Number of successful extensions: 6688
Number of sequences better than 1.0e-05: 284
Number of HSP's gapped: 6794
Number of HSP's successfully gapped: 284
Length of query: 55
Length of database: 757,237,578
Length adjustment: 27
Effective length of query: 28
Effective length of database: 683,929,905
Effective search space: 19150037340
Effective search space used: 19150037340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 120 (50.8 bits)