BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0015.p (367 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00186500.1| hypothetical protein Rxyl262301 [Rubrobacter ... 234 2e-60 ref|NP_377491.1| 382aa long hypothetical succinyl-diaminopimelat... 137 3e-31 ref|ZP_00019446.1| hypothetical protein [Chloroflexus aurantiacus] 125 2e-27 ref|ZP_00087312.1| COG0624: Acetylornithine deacetylase/Succinyl... 116 7e-25 ref|ZP_00006027.1| COG0624: Acetylornithine deacetylase/Succinyl... 114 3e-24 >ref|ZP_00186500.1| hypothetical protein Rxyl262301 [Rubrobacter xylanophilus DSM 9941] Length = 315 Score = 234 bits (597), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 132/300 (44%), Positives = 183/300 (61%), Gaps = 9/300 (3%) Query: 68 LGTGDPVVVLNGHLDVVPASPEEFIPYVEDGRLFGRGSYDMLGSVAAMMVLMSELATRPP 127 +G+G+P ++ +GH+DVVP +F PY EDG L+GRG YDM G++AAMM M +L Sbjct: 3 VGSGEPRILFHGHVDVVPGEEWQFDPYEEDGELYGRGVYDMKGALAAMMYAMEDLHLLGC 62 Query: 128 DCRVVLKLVPDEES--GGELGTGHLVRQLGLVGDVAICGEPTNLNIAVQAKGILQVTIDV 185 + V L +VPDEE GG G L+ Q G VGD I GEPT+ ++ QAKG+L + + + Sbjct: 63 EATVELLVVPDEEREYGGPKGAEILI-QHGHVGDFLITGEPTDFHVGTQAKGVLHLRVTL 121 Query: 186 PGLAAHGSRPWLGKNAILEALRHFQAIASLRFFQESTPFFPQPSLNLAKIQAGTVFNQVP 245 G +AHGSRPWLGKNA+L A H++ + L F E + FP PS+N A+I G V N+VP Sbjct: 122 RGKSAHGSRPWLGKNAVLMAYEHYRRVLELPFAHERSELFPYPSINFARIIGGDVINRVP 181 Query: 246 DLCRLSIDIRYLPGQDPAAILAAIREAVPQSEVNVHFEGSPVNTQISDRWVKKLRHHAGS 305 D +DIRYLPGQDP I IR +EV V + P + +VK LR A Sbjct: 182 DRATYDMDIRYLPGQDPKEITRQIRSIDLPAEVEVLYSCEPTYVSRRNPYVKALREVAAR 241 Query: 306 HF------FGQDGSADTRFYAEQGIPAVEFGPSGANHHGPGEYVLIDSMLRYKEILKEFI 359 H+ G+ G++D ++ G+P VEFGP G HHGP EYV+ +S+ Y+++L +F+ Sbjct: 242 HYHGNPVGVGRHGASDIVYFQRVGVPGVEFGPIGGGHHGPAEYVVCESLEAYRQMLVQFV 301 >ref|NP_377491.1| 382aa long hypothetical succinyl-diaminopimelate desuccinylase [Sulfolobus tokodaii] dbj|BAB66600.1| 382aa long hypothetical succinyl-diaminopimelate desuccinylase [Sulfolobus tokodaii] Length = 382 Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 103/379 (27%), Positives = 177/379 (46%), Gaps = 39/379 (10%) Query: 17 IVSLARRLIAFQ--NTSAERINCCTDYCTDWLRQHGLAVRCYE-HGGLKSLVAELGT-GD 72 I L +LI F N AE ++ C + D+L G + + E G +++E G D Sbjct: 3 IEELTSKLIQFPTVNPPAENLHDCASFIKDYLSSQGFSSQVIEFEKGWPVVISENGNKND 62 Query: 73 PVVVLNGHLDVVPA---SPEEFIPY---VEDGRLFGRGSYDMLGSVAAMMVLMSELATRP 126 +++LNGH DVVP + ++ P+ + D +++GRGS DM G +A M + +E+A + Sbjct: 63 KLIMLNGHYDVVPTGDVNKWKYNPFSGKIIDDKVYGRGSTDMKGGLAVFMKVFTEIADKV 122 Query: 127 PDCRVVLKLVPDEESGGELGTGHLVRQLGLVGDVAICGEPTNLN-IAVQAKGILQVTIDV 185 + ++ VPDEESGG+ G+ +L + D+ + EP+ + I + KG+LQV + Sbjct: 123 -NYNLIFTAVPDEESGGDKGSKYLADRYK--PDLVLISEPSGSDSINIGEKGLLQVKLIA 179 Query: 186 PGLAAHGSRPWLGKNAILEALRHFQAIASL---------RFFQESTPFFPQP-------- 228 G AHGS P LG+NAI++ ++ + + + T P Sbjct: 180 KGKVAHGSLPSLGENAIMKLVKDLIQLEKIKEIEIKIPDNLIEAMTARIPSEIAKNDVLR 239 Query: 229 -SLNLAKIQAGTVFNQVPDLCRLSIDIRYLPGQDPAAILAAIREAVPQSEVNVHFEGSPV 287 S N I+ G N VPD + +D+R PG + L +R V Q E+ P Sbjct: 240 ISFNPGVIKGGVKVNVVPDYAEVEVDMRIPPGINSGEALNIVRSLVKQGEIIPLDISEPN 299 Query: 288 NTQISDRWVKKLRHHAGSHF------FGQDGSADTRFYAEQGIPAVEFGPSGANH-HGPG 340 T + +VKKL + + G+ D R++ +G+P + +GP H Sbjct: 300 YTPPDNEFVKKLENIIYKQLGIKAKKYIITGATDGRYFRYKGVPVIVYGPGELGMAHAYD 359 Query: 341 EYVLIDSMLRYKEILKEFI 359 E++ + ++K+++ Sbjct: 360 EFISFKELRNSYTVIKDYL 378 >ref|ZP_00019446.1| hypothetical protein [Chloroflexus aurantiacus] Length = 253 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 126/252 (50%), Gaps = 9/252 (3%) Query: 115 MMVLMSELATRPPDCRVVLKLVPDEESGGELGTGHLVRQLGLVGDVAICGEPTNLNIAVQ 174 MM L+ +LA RP V + V DEE GG GTG L R G D +C EPT+L I + Sbjct: 1 MMRLIRDLAQRPNPPDVGFQFVTDEEIGGRHGTGRL-RDEGWHCDFMLCLEPTDLGIMFE 59 Query: 175 AKGILQVTIDVPGLAAHGSRPWLGKNAILEALRHFQAIASLRFFQESTPFFPQPSLNLAK 234 KG + + +PG AAHGSRPW G N + ++ QAI S R+ + P + S+ + Sbjct: 60 HKGGMWAQLRIPGRAAHGSRPWEGDNPVYRLMQGIQAI-SERYPPPTGPHDWRTSVTPTE 118 Query: 235 IQAGT-VFNQVPDLCRLSIDIRYLPGQDPAAILAAIREAVPQSEVNVHFEGSPVNTQISD 293 I+ G NQVP ++ DIR+ P I A + A P +E + + T Sbjct: 119 IRMGAGSRNQVPAEALVTFDIRWTADTTPETIQADLAAAFPDAEFISVMASAGLRTDPEH 178 Query: 294 RWVKKL----RHHAG--SHFFGQDGSADTRFYAEQGIPAVEFGPSGANHHGPGEYVLIDS 347 + V ++ H G F+ + + D R+Y+ GIPA+ GP GA H E+V I S Sbjct: 179 QEVGRIADIVERHIGHTPRFYREHFATDARYYSHIGIPAICLGPVGAGLHSAEEWVEIAS 238 Query: 348 MLRYKEILKEFI 359 + +I+ ++I Sbjct: 239 LTSLYQIILDYI 250 >ref|ZP_00087312.1| COG0624: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Pseudomonas fluorescens PfO-1] Length = 382 Score = 116 bits (291), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 115/380 (30%), Positives = 164/380 (43%), Gaps = 37/380 (9%) Query: 18 VSLARRLIAFQNTSAERINCCTDYCTDWLRQHGLAVRC----YEHGGLKSLVAELGTGD- 72 V+L + L+ F TS E D+ +L G V C + +L A +G D Sbjct: 5 VALLKTLVEFDTTSRESNLQLIDFVRSYL--EGFDVPCELIYNDERSKANLFATIGPADQ 62 Query: 73 PVVVLNGHLDVVPASPEEF-IPYVE----DGRLFGRGSYDMLGSVAAMMVLMSELATRPP 127 P +VL+GH DVVPA + + +P E DG+L+GRG+ DM G +A ++ L+ L P Sbjct: 63 PGIVLSGHTDVVPADGQPWTLPPFELSERDGKLYGRGTADMKGYIACVLALVPSLIEAPL 122 Query: 128 DCRVVLKLVPDEESGGELGTGHLVR---QLGLVGDVAICGEPTNLNIAVQAKGILQVTID 184 V + L DEE G LG L++ Q + + I GEPT L + KG L + D Sbjct: 123 RLPVHIALSYDEEVGC-LGVRSLLKVLEQRPVKPLLCIIGEPTELKPVLGHKGKLAMRCD 181 Query: 185 VPGLAAHGSRPWLGKNAI---LEALRHFQAIASLRFFQESTPFF--PQPSLNLAKIQAGT 239 V G A H + LG NAI E + I + P F P ++ I G Sbjct: 182 VQGHACHSAYAPLGVNAIECAAELIGELGRIGRQLKDEHVDPRFDPPYSTVQTGVIGGGK 241 Query: 240 VFNQVPDLCRLSIDIRYLPGQDPAAI------------LAAIREAVPQSEVNV-HFEGSP 286 N VP CR +IR LP QDPA + L +R QS++ P Sbjct: 242 ALNIVPADCRFDFEIRALPSQDPAVVARQLKAYAEQQMLPRMRAVSEQSDIRFSELSAYP 301 Query: 287 -VNTQISDRWVKKLRHHAGSHFFGQDG-SADTRFYAEQGIPAVEFGPSGANH-HGPGEYV 343 + T + + + GS FG + + GIP V GP + H P E+V Sbjct: 302 GLATDARSQAAQLIATFCGSDDFGTVAFGTEGGLFDAVGIPTVVCGPGSMDQGHKPDEFV 361 Query: 344 LIDSMLRYKEILKEFITHIR 363 ID + +L+ + IR Sbjct: 362 SIDQLTACDAMLQRMLASIR 381 >ref|ZP_00006027.1| COG0624: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Rhodobacter sphaeroides] Length = 364 Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 116/370 (31%), Positives = 159/370 (42%), Gaps = 44/370 (11%) Query: 17 IVSLARRLIAFQNTSAE-RINCCTDYCTDWLRQHGLAVRCYEHGGLK-SLVAELGTGDPV 74 +V+L R LI F + R +C + L + G A R +HG + SL+AE G G + Sbjct: 8 VVALTRALIGFDTINPPGREAPAMRFCQELLERAGFACRLIDHGKHRASLIAERGPGGGL 67 Query: 75 VVLNGHLDVVPA-----SPEEFIPYVEDGRLFGRGSYDMLGSVAAMMVLMSELATRPPDC 129 +GHLD VP S E VE RL+GRGS DM G VAA +V + Sbjct: 68 C-FSGHLDTVPLGRAPWSREAHGGAVEGDRLYGRGSSDMKGGVAAFLVAAAR-----SGA 121 Query: 130 RVVLKLVPDEESG-------GELGTGHLVRQLGLVGDVAICGEPTNLNIAVQAKGILQVT 182 V + L EE+G E G VR + I GE T KG L + Sbjct: 122 PVTVLLTAGEETGCDGARWLAEAGRLPRVRAM-------IVGESTGNRPLAGHKGALWLK 174 Query: 183 IDVPGLAAHGSRPWLGKNAI-LEALRHFQAIASLRFFQEST--PFFPQPSLNLAKIQAGT 239 + G AHG+ P LG NAI L A +A L +Q P + + NL I+AG Sbjct: 175 LSTEGRTAHGAAPHLGINAIGLMA----TTLARLTGWQPEAHHPRMGRATANLGTIRAGI 230 Query: 240 VFNQVPDLCRLSIDIRYLPGQDPAAILAAIREAV-PQSEVNVHFEGSPVNTQISDRWVKK 298 N VPDLC L++D+R + G D AA+ A +R P V + V T+ D W + Sbjct: 231 NVNSVPDLCELTVDLRSVEGVDHAALAAEVRGLCDPAVRVETLLDLPAVWTEPEDPWFAR 290 Query: 299 LRHHAGSHFFGQDGSADTRFYAEQGI-------PAVE-FGPSGANH-HGPGEYVLIDSML 349 + +G ++ + I PAV GP + HG E+VL+ + Sbjct: 291 AAGQVRAVTGPAEGPDCATYFTDASILKPAMGDPAVMILGPGSVDQPHGTDEHVLVSRLA 350 Query: 350 RYKEILKEFI 359 EI I Sbjct: 351 EAVEIYAALI 360 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.138 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 560,613,247 Number of extensions: 23955394 Number of successful extensions: 54851 Number of sequences better than 1.0e-05: 697 Number of HSP's gapped: 54134 Number of HSP's successfully gapped: 699 Length of query: 367 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 240 Effective length of database: 412,420,005 Effective search space: 98980801200 Effective search space used: 98980801200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)