BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0013.p (626 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00179914.1| hypothetical protein Mther219201 [Moorella th... 295 2e-78 gb|EAK56314.1| unknown [environmental sequence] 281 4e-74 ref|ZP_00035114.1| COG3829: Transcriptional regulator containing... 271 4e-71 ref|ZP_00166754.1| hypothetical protein Raeut496101 [Ralstonia e... 271 4e-71 ref|NP_622222.1| NtrC family Transcriptional regulator, ATPase d... 270 7e-71 >ref|ZP_00179914.1| hypothetical protein Mther219201 [Moorella thermoacetica ATCC 39073] Length = 325 Score = 295 bits (756), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 152/269 (56%), Positives = 197/269 (73%), Gaps = 15/269 (5%) Query: 325 SRFTFEDIVTDAEPMKRIIEKAKKMAKNDLSVLILGENGTGKELFAHSIHDYSHRSPFAF 384 +R+TFEDIVT + M +IIE+A++ A + +VLI GE GTGKE+ A SIH+ S R F Sbjct: 2 ARYTFEDIVTQSPVMAKIIERARQFAAAEATVLINGETGTGKEMVAQSIHNASRRRNGPF 61 Query: 385 IAVNCSALPENLLESELFGYEEGAFTGARKGGKPGLFEQAHKGTIFLDEIGDISPHLQAR 444 +AVNC+A+PENLLESELFGYEEGAFTGARKGGK GLFE AH GT+FLDEIG++S +LQAR Sbjct: 62 VAVNCAAVPENLLESELFGYEEGAFTGARKGGKKGLFELAHGGTLFLDEIGELSLNLQAR 121 Query: 445 LLRVIQQKEILKVGGTRLLPVDVRVIAATNRNLAELVKSGGFREDLYYRLKVLQIEIVPL 504 LLRV+QQK I++VGG R+LPVDVR+IAAT+RNL + + FR DLYYRL VLQI + PL Sbjct: 122 LLRVLQQKAIMRVGGDRVLPVDVRIIAATHRNLKDAIARDAFRRDLYYRLNVLQINLPPL 181 Query: 505 RERKEDIPRLIRYFLARRGITR---KLPP----ELSVALAAHDWPGNIRELENTVEYIAI 557 RER ED+P LI+ + + I+R +LPP E+ + A+ WPGN+RELEN +E + + Sbjct: 182 RERPEDLPLLIKALVEK--ISRRAGRLPPIFSEEIIARMQAYSWPGNVRELENILERLVV 239 Query: 558 M-NGEDFSVEDL-----PFETNSPPVAEV 580 + +GE+ DL P E PV ++ Sbjct: 240 LRSGEEVEAGDLDEILEPAENQPQPVLQL 268 >gb|EAK56314.1| unknown [environmental sequence] Length = 660 Score = 281 bits (718), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 170/433 (39%), Positives = 238/433 (54%), Gaps = 30/433 (6%) Query: 151 IGPR-VIDIGTIVEILTRFNLVNSKTRRILDRYASEIMTSSQGLQFTMQEMLDTKNLFEE 209 +GP V D+ + F ++ R+ ++ A E+ ++ F Q + NL Sbjct: 162 VGPGLVTDLAASAGMGAVFLYSHASVRKAVE-TALEVAYATHAEAFRRQRL---DNL--- 214 Query: 210 TLNMVQDGVVTYDELGRVTFINRTAEEILXXXXAWDGSRLKVGQLFSRHGIELEWQEGEI 269 L ++DGVV D GRV IN L A VG+ EL GE Sbjct: 215 -LQHLRDGVVALDARGRVEAINERLASALGVEPA-----AAVGRALVDLRPELRTLRGED 268 Query: 270 RDRLVTIRKQNVILSKMAILGRGNAKERVLIFNIAXXXXXXXXXXXXXXXDKGHTSRFTF 329 D L T+R ++ + ++ RG VL F + + +R+ Sbjct: 269 GDALATVRGVRYVVHRGPLVDRGVTSGSVLTFQESRAVERLDRALRSQPTTQQFAARYAL 328 Query: 330 EDIVTDAEPMKRIIEKAKKMAKNDLSVLILGENGTGKELFAHSIHDYSHRSPFAFIAVNC 389 +D+V + PM R+ + ++ AK+D +VL+LGE+GTGKE+ A S+H S R + F+AVNC Sbjct: 329 DDVVGASAPMARVRDLVRRYAKSDATVLVLGESGTGKEMIAQSLHALSARRSYPFVAVNC 388 Query: 390 SALPENLLESELFGYEEGAFTGARKGGKPGLFEQAHKGTIFLDEIGDISPHLQARLLRVI 449 A PE LLESELFGYEEGAFTGAR+GGK GLFE AH+GT+FLDEIG++ P LQ+RLLR + Sbjct: 389 GAFPEALLESELFGYEEGAFTGARRGGKTGLFEAAHRGTLFLDEIGEMPPSLQSRLLRAL 448 Query: 450 QQKEILKVGGTRLLPVDVRVIAATNRNLAELVKSGGFREDLYYRLKVLQIEIVPLRERKE 509 Q++E++++G T + +DVRVIAAT+R L V++G FR DLYYRL +L + + PLRER Sbjct: 449 QEREVIRLGSTEPIRIDVRVIAATHRPLLAAVEAGTFRADLYYRLNILNVGLPPLRERAA 508 Query: 510 DIPRLIRYFL---ARR------------GITRKLPPELSVALAAHDWPGNIRELENTVEY 554 DIP L L ARR R L +V LA + WPGN+REL+N +E Sbjct: 509 DIPALAATLLVQAARREPRLAERLRDADDAARVLGATQAV-LARYGWPGNVRELQNVIER 567 Query: 555 IAIMNGEDFSVED 567 IA+ E+ D Sbjct: 568 IAVELAEEADEND 580 >ref|ZP_00035114.1| COG3829: Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Burkholderia fungorum] Length = 482 Score = 271 bits (693), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 153/358 (42%), Positives = 217/358 (60%), Gaps = 15/358 (4%) Query: 214 VQDGVVTYDELGRVTFINRTAEEILXXXXAWDGSRLKVGQLFSRHGIELEW---QEGEIR 270 ++DGV +DE G+V +N ++L D R GQ+ G L + I Sbjct: 36 LRDGVAAFDEAGQVEAVNPAMLDLL----GLDRERDVAGQVERAVGPLLRETLEHDMPIE 91 Query: 271 DRLVTIRKQNVILSKMAILGRGNAKERVLIFNIAXXXXXXXXXXXXXXXDKGHTSRFTFE 330 +R+ I + +I++ + I+ +G V+ A K +R + Sbjct: 92 ERIEQIGGRALIVNCLPIVEQGVRSGSVVTLQDALVAQRIDRSLRTSQRPKHLVARHRLD 151 Query: 331 DIVTDAEPMKRIIEKAKKMAKNDLSVLILGENGTGKELFAHSIHDYSHRSPFAFIAVNCS 390 D++ ++ ++R+ A+ A +D +VL+ GE+GTGKEL A IH+ S R F+A NC+ Sbjct: 152 DLIGNSAALERVRRLARAGAAHDATVLLSGESGTGKELVAQGIHNASSRRGNPFVAFNCA 211 Query: 391 ALPENLLESELFGYEEGAFTGARKGGKPGLFEQAHKGTIFLDEIGDISPHLQARLLRVIQ 450 ALPE L+ESELFG+EEGAFTGAR+GGKPGLFE AH GTIFLDEIG++ LQ+RLLRV+Q Sbjct: 212 ALPEGLIESELFGHEEGAFTGARRGGKPGLFEIAHTGTIFLDEIGEMPAALQSRLLRVLQ 271 Query: 451 QKEILKVGGTRLLPVDVRVIAATNRNLAELVKSGGFREDLYYRLKVLQIEIVPLRERKED 510 ++E++K+G R PVDVRVIAAT+R+L LV+ G FR DLY+RL +LQIE+ PLRER+ED Sbjct: 272 EREVMKLGSGRATPVDVRVIAATHRDLHALVEQGAFRADLYFRLNLLQIELPPLRERRED 331 Query: 511 IPRLIRYFLARRGITRKLP--------PELSVALAAHDWPGNIRELENTVEYIAIMNG 560 +P+L R+ L+R + L L+ A + WPGN+RELEN + AI G Sbjct: 332 VPQLARHLLSRSALQYGLSEVAIERVLAFLAPLFAHYAWPGNVRELENLLTRAAIYPG 389 >ref|ZP_00166754.1| hypothetical protein Raeut496101 [Ralstonia eutropha JMP134] Length = 341 Score = 271 bits (692), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 133/240 (55%), Positives = 169/240 (70%), Gaps = 8/240 (3%) Query: 326 RFTFEDIVTDAEPMKRIIEKAKKMAKNDLSVLILGENGTGKELFAHSIHDYSHRSPFAFI 385 R++ ED+ + M + E A++ A D +VLI GE+GTGKE+ A +HD S R F F+ Sbjct: 2 RYSLEDLAGTSAAMMHVRELARRYASVDSTVLIGGESGTGKEVLAQGMHDASPRRAFPFV 61 Query: 386 AVNCSALPENLLESELFGYEEGAFTGARKGGKPGLFEQAHKGTIFLDEIGDISPHLQARL 445 AVNC+A PE LLESELFGYEEGAFTGAR+GGK GLFE AH GT+FLDE+GD+ P LQ RL Sbjct: 62 AVNCAAFPETLLESELFGYEEGAFTGARRGGKAGLFESAHNGTLFLDEVGDMPPALQTRL 121 Query: 446 LRVIQQKEILKVGGTRLLPVDVRVIAATNRNLAELVKSGGFREDLYYRLKVLQIEIVPLR 505 LRV+Q+K++L +GG +PV+VRVIAAT+R+L + V G FR+DLYYRL +L+IE+ PLR Sbjct: 122 LRVLQEKQVLPIGGLEAVPVNVRVIAATHRDLVQRVSEGTFRQDLYYRLNILRIEVPPLR 181 Query: 506 ERKEDIPRLIRYFLARRGITR-------KLPPELSVALAAHDWPGNIRELENTVEYIAIM 558 R ED+P L L RR + R LP LA + WPGNIRELEN E IA++ Sbjct: 182 ARAEDLPELAE-LLYRRALERLGLEDHEGLPQAARARLAGYHWPGNIRELENVTERIAVL 240 >ref|NP_622222.1| NtrC family Transcriptional regulator, ATPase domain [Thermoanaerobacter tengcongensis] gb|AAM23826.1| NtrC family Transcriptional regulator, ATPase domain [Thermoanaerobacter tengcongensis] Length = 469 Score = 270 bits (690), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 134/255 (52%), Positives = 185/255 (72%), Gaps = 5/255 (1%) Query: 321 KGHTSRFTFEDIVTDAEPMKRIIEKAKKMAKNDLSVLILGENGTGKELFAHSIHDYSHRS 380 K H +++++E+I+ ++ + +KA KMA D ++LI GE+G GKELFAH+IH+ S R Sbjct: 145 KIHGAKYSWENIIGKSDAIVECKKKAMKMANMDSNILIYGESGVGKELFAHAIHNSSKRR 204 Query: 381 PFAFIAVNCSALPENLLESELFGYEEGAFTGARKGGKPGLFEQAHKGTIFLDEIGDISPH 440 + F+ VNC+A+PE L+ESELFGYEEGAFTGA+KGGK G FE A+ GTIFLDEIGD+ Sbjct: 205 DYPFVTVNCAAIPEQLMESELFGYEEGAFTGAQKGGKIGKFELANHGTIFLDEIGDMPYT 264 Query: 441 LQARLLRVIQQKEILKVGGTRLLPVDVRVIAATNRNLAELVKSGGFREDLYYRLKVLQIE 500 +QA+LLRV+Q+ EI +VGG + VDVRVI+ATN++L++LVK G FR DL+YR+ VL + Sbjct: 265 MQAKLLRVLQEGEIERVGGKAPIKVDVRVISATNKDLSKLVKEGKFRSDLFYRINVLMLN 324 Query: 501 IVPLRERKEDIPRLIRYFLA----RRGITRKLPPELSVALAAHDWPGNIRELENTVEYIA 556 + PLRERKEDIP LI +FL+ GI +K+ E+ L +DWPGNIREL N +E + Sbjct: 325 VPPLRERKEDIPLLIDHFLSLLTQNSGIYKKVSKEVYDILEKYDWPGNIRELRNVIERMV 384 Query: 557 IMN-GEDFSVEDLPF 570 + + G+ D+P Sbjct: 385 VNSEGDIIRKTDIPL 399 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.138 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 836,111,717 Number of extensions: 33308757 Number of successful extensions: 95028 Number of sequences better than 1.0e-05: 1914 Number of HSP's gapped: 91906 Number of HSP's successfully gapped: 1914 Length of query: 626 Length of database: 757,237,578 Length adjustment: 132 Effective length of query: 494 Effective length of database: 398,844,510 Effective search space: 197029187940 Effective search space used: 197029187940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)