BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0522.0002.p
         (140 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB57492.1| hypothetical protein [Sulfolobus solfataricus]         61   1e-08

>emb|CAB57492.1| hypothetical protein [Sulfolobus solfataricus]
          Length = 168

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 61/127 (48%), Gaps = 10/127 (7%)

Query: 1   VSSDHSIA----------SSMFLSLHVPSFFPSGSYIFSFAPRLTSSGKIINEGASLISS 50
           ++S HS+A          SS+ L++        GSY  + AP  T S  I N   SL+SS
Sbjct: 42  LNSSHSVAIITPSDLFTHSSLLLTISTNDVLALGSYAMTLAPISTKSLAIFNATLSLVSS 101

Query: 51  VLGLKVIPSTAIVLPLTSSIALTILSTILFFCLSFAWTVVSIREIGSPTSWAIRANAIVS 110
           VLGL  IP   IVLP +S    +I+ T L    S  +   S     SP S A  A A VS
Sbjct: 102 VLGLNAIPKIQIVLPFSSPNNSSIIFTALLGLSSLTFIAASTIFNSSPNSLAKDAKARVS 161

Query: 111 LGKQLPP 117
           LGK  PP
Sbjct: 162 LGKHEPP 168


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.322    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 200,419,421
Number of extensions: 7384535
Number of successful extensions: 20828
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 20828
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 757,237,578
Length adjustment: 101
Effective length of query: 39
Effective length of database: 483,012,579
Effective search space: 18837490581
Effective search space used: 18837490581
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 120 (50.8 bits)