BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0520.0054.p (332 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00018215.1| hypothetical protein [Chloroflexus aurantiacus] 361 2e-98 ref|NP_346822.1| Oligopeptide ABC transporter, ATP-binding prote... 358 1e-97 ref|NP_977327.1| oligopeptide ABC transporter, ATP-binding prote... 358 1e-97 ref|NP_693373.1| oligopeptide ABC transporter ATP-binding protei... 357 2e-97 ref|NP_830697.1| Oligopeptide transport ATP-binding protein oppF... 357 2e-97 >ref|ZP_00018215.1| hypothetical protein [Chloroflexus aurantiacus] Length = 334 Score = 361 bits (926), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 173/330 (52%), Positives = 230/330 (69%), Gaps = 3/330 (0%) Query: 1 MNAVSLATGEAKQPLLQVKNLKKHFPARTPGSFRKSL--VKAVDGVSFEMNEGETYGLVG 58 M+ S A LL+V+NLKK+FP + G R+++ V+AVD VSF + GET GLVG Sbjct: 1 MSMTSPVLQPANDTLLEVRNLKKYFPIKG-GFLRRTIAEVRAVDDVSFTVKRGETLGLVG 59 Query: 59 ESGCGKSTLGRTLLRLTEPTSGEALYQGNDLIGQSRHALRGYRQELQMVFQDPFSSLNPR 118 ESGCGK+T GRT+LRL T+GE +++G D++ S ++ R+++Q++FQDP++SL+PR Sbjct: 60 ESGCGKTTTGRTVLRLERATAGEVIFEGQDVMRASGRTMKALRRDMQIIFQDPYASLDPR 119 Query: 119 KIIGKALEEPLVIHGIGSPEERMRRAMDILQTVGMQMEHYYRLPHELSGGQRQRIGLARA 178 IG+++ E LVIHGIG+P ER R ++L VG+ H R PHE SGGQRQRIG+ARA Sbjct: 120 ITIGESVAEGLVIHGIGTPAERRERVREVLAKVGLSASHMSRFPHEFSGGQRQRIGIARA 179 Query: 179 LILNPKIVVCDEPVSALDVIIQSQIINLMRKLQDELGLTYLFIAHDIGVVRHISDRIGIM 238 LI+ PK++VCDEPVSALDV IQSQ++NL+R LQ E GLTYLFIAH++ VV HISDR+G+M Sbjct: 180 LIMEPKLIVCDEPVSALDVSIQSQVLNLLRSLQREFGLTYLFIAHNLAVVEHISDRVGVM 239 Query: 239 YLGKLVEEADTDSLFANPLHPYTQVLLSAVPAPDPTRIKERIILQXXXXXXXXXXXXCAF 298 YLGK+VE ++ LF PLHPYT+ L+SA+P P+P +ERI+LQ C F Sbjct: 240 YLGKMVELTTSEELFREPLHPYTKALISAIPNPNPFAKRERIVLQGDVPSPINPPSGCRF 299 Query: 299 HTRCPYALEKCASEVPIQRSVAPGHRVACH 328 H RC A C + P+ GH VACH Sbjct: 300 HPRCWIAKSICKEQEPVFEEKRKGHWVACH 329 >ref|NP_346822.1| Oligopeptide ABC transporter, ATP-binding protein [Clostridium acetobutylicum] pir||G96921 oligopeptide ABC transporter, ATP-binding protein CAC0180 [imported] - Clostridium acetobutylicum gb|AAK78162.1| Oligopeptide ABC transporter, ATP-binding protein [Clostridium acetobutylicum] Length = 321 Score = 358 bits (918), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 174/319 (54%), Positives = 225/319 (70%), Gaps = 3/319 (0%) Query: 12 KQPLLQVKNLKKHFPARTPGSFRKS--LVKAVDGVSFEMNEGETYGLVGESGCGKSTLGR 69 ++ +L+V+NLKK+FP +T G FRK+ VK+VD VSF++ E E GLVGESGCGK+T GR Sbjct: 2 EEAILKVRNLKKYFPIKT-GFFRKTTGYVKSVDDVSFDIAENEIMGLVGESGCGKTTTGR 60 Query: 70 TLLRLTEPTSGEALYQGNDLIGQSRHALRGYRQELQMVFQDPFSSLNPRKIIGKALEEPL 129 TLLRL E T GE LY+G DL ++ +LR R E+QM+FQDP+SSLNPR +G+ + E L Sbjct: 61 TLLRLMEKTEGEVLYRGKDLFSLNKKSLRNLRPEIQMIFQDPYSSLNPRMTVGEIVGEAL 120 Query: 130 VIHGIGSPEERMRRAMDILQTVGMQMEHYYRLPHELSGGQRQRIGLARALILNPKIVVCD 189 + H + + E + +++ G+ H R PHE SGGQRQRIG+ARALILNPK +V D Sbjct: 121 LDHKLCTKSEVNYKVEEMITACGLASYHMRRFPHEFSGGQRQRIGIARALILNPKFIVAD 180 Query: 190 EPVSALDVIIQSQIINLMRKLQDELGLTYLFIAHDIGVVRHISDRIGIMYLGKLVEEADT 249 EPVSALDV IQ+Q+INL+ +LQ + G + LFI+HD+ VV+HI +IG+MYLG +VE A Sbjct: 181 EPVSALDVSIQAQVINLLAELQKKKGFSCLFISHDLSVVQHICQKIGVMYLGSMVELAGN 240 Query: 250 DSLFANPLHPYTQVLLSAVPAPDPTRIKERIILQXXXXXXXXXXXXCAFHTRCPYALEKC 309 + LF NPLHPYT+ LLSA+P PDPT + RIIL+ C FHTRC YA EKC Sbjct: 241 EELFTNPLHPYTKALLSAIPIPDPTLKRNRIILKGDIPSPANPPSGCKFHTRCNYATEKC 300 Query: 310 ASEVPIQRSVAPGHRVACH 328 + EVP + V GH VACH Sbjct: 301 SKEVPEYKEVIKGHFVACH 319 >ref|NP_977327.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS39935.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 323 Score = 358 bits (918), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 166/320 (51%), Positives = 230/320 (71%), Gaps = 2/320 (0%) Query: 12 KQPLLQVKNLKKHFPARTPGSFRKS-LVKAVDGVSFEMNEGETYGLVGESGCGKSTLGRT 70 ++ L++V+NLKK+FP + RK+ +KAVD +SF + +GET+GLVGESGCGKST GR+ Sbjct: 3 EENLIEVRNLKKYFPIKKGLFGRKTEQLKAVDDLSFTIKKGETFGLVGESGCGKSTTGRS 62 Query: 71 LLRLTEPTSGEALYQGNDLIGQSRHALRGYRQELQMVFQDPFSSLNPRKIIGKALEEPLV 130 ++RL + TSG L+ G D+ L+ YR+ +Q++FQDP++SLNP + + + EP+ Sbjct: 63 IIRLHDVTSGNVLFDGKDIASLKESELKEYRKRMQIIFQDPYASLNPSMNVFQIISEPMN 122 Query: 131 IHGIGSPEERMRRAMDILQTVGMQMEHYYRLPHELSGGQRQRIGLARALILNPKIVVCDE 190 IHG EE+ +D+L+ VG++ EH YR PHE SGGQRQRI +ARAL + P ++CDE Sbjct: 123 IHGSYEKEEQKEIILDLLKKVGLKEEHLYRYPHEFSGGQRQRISIARALSVKPDFILCDE 182 Query: 191 PVSALDVIIQSQIINLMRKLQDELGLTYLFIAHDIGVVRHISDRIGIMYLGKLVEEADTD 250 P+SALDV +Q+Q++N+++ +Q+E G+TYLFIAHD+ +VRHISDRIG+MYLG +VE AD++ Sbjct: 183 PISALDVSVQAQVVNMLQDIQEETGVTYLFIAHDLSMVRHISDRIGVMYLGNIVEIADSE 242 Query: 251 SLFANPLHPYTQVLLSAVPAPDPTRI-KERIILQXXXXXXXXXXXXCAFHTRCPYALEKC 309 L+ P HPYTQ LLS++P PDPT I KERIIL+ C F TRC +A EKC Sbjct: 243 DLYTKPAHPYTQALLSSMPEPDPTNIGKERIILEGEVPSPLNSPSGCKFRTRCKFATEKC 302 Query: 310 ASEVPIQRSVAPGHRVACHV 329 A EVP +A GH VACH+ Sbjct: 303 AQEVPKMVEIAKGHEVACHL 322 >ref|NP_693373.1| oligopeptide ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC14408.1| oligopeptide ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] Length = 340 Score = 357 bits (917), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 173/323 (53%), Positives = 227/323 (70%), Gaps = 3/323 (0%) Query: 9 GEAKQPLLQVKNLKKHFPARTPGSFRKSL--VKAVDGVSFEMNEGETYGLVGESGCGKST 66 + QPLL+V++LKK+FP + G +S+ VKAVD VSFE+ GE G+VGESGCGKST Sbjct: 2 AQHNQPLLEVRSLKKYFPVKG-GVLGRSVGEVKAVDDVSFEVYPGEILGIVGESGCGKST 60 Query: 67 LGRTLLRLTEPTSGEALYQGNDLIGQSRHALRGYRQELQMVFQDPFSSLNPRKIIGKALE 126 G+ +LRL EPT GE ++QG D+ + +R R+++Q++FQDP++SLNPR + K + Sbjct: 61 TGKAILRLIEPTEGEVIFQGKDITKLNAEQMRLLRKDMQIIFQDPYASLNPRHTVEKIIN 120 Query: 127 EPLVIHGIGSPEERMRRAMDILQTVGMQMEHYYRLPHELSGGQRQRIGLARALILNPKIV 186 EPL+IH ER +R ++L+ VG+ H R PH+ SGGQRQRIG+ARAL NPK++ Sbjct: 121 EPLMIHTDAKKAERRKRIKELLEVVGLSPYHASRYPHQFSGGQRQRIGIARALANNPKLI 180 Query: 187 VCDEPVSALDVIIQSQIINLMRKLQDELGLTYLFIAHDIGVVRHISDRIGIMYLGKLVEE 246 +CDEPVSALDV +QSQ++NLM KL+DE LTY+FIAHD+ VV+HISDR+G+MYLGK+VE Sbjct: 181 ICDEPVSALDVSVQSQVLNLMEKLRDEFQLTYIFIAHDLSVVKHISDRVGVMYLGKMVEI 240 Query: 247 ADTDSLFANPLHPYTQVLLSAVPAPDPTRIKERIILQXXXXXXXXXXXXCAFHTRCPYAL 306 A D L+ N HPYTQ LLSAVP PDP +ERIIL+ C FHTRCP A+ Sbjct: 241 APKDQLYDNAKHPYTQALLSAVPDPDPDVQRERIILEGDVPSPQDPPSGCPFHTRCPMAM 300 Query: 307 EKCASEVPIQRSVAPGHRVACHV 329 + C E+P V H VACH+ Sbjct: 301 DICRQELPQFLPVEDNHVVACHL 323 >ref|NP_830697.1| Oligopeptide transport ATP-binding protein oppF [Bacillus cereus ATCC 14579] gb|AAP07898.1| Oligopeptide transport ATP-binding protein oppF [Bacillus cereus ATCC 14579] Length = 326 Score = 357 bits (916), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 166/320 (51%), Positives = 230/320 (71%), Gaps = 2/320 (0%) Query: 12 KQPLLQVKNLKKHFPARTPGSFRKS-LVKAVDGVSFEMNEGETYGLVGESGCGKSTLGRT 70 ++ L++V+NLKK+FP + RK+ +KAVD +SF + +GET+GLVGESGCGKST GR+ Sbjct: 6 EENLIEVRNLKKYFPIKKGLFGRKTEQLKAVDDLSFTIKKGETFGLVGESGCGKSTTGRS 65 Query: 71 LLRLTEPTSGEALYQGNDLIGQSRHALRGYRQELQMVFQDPFSSLNPRKIIGKALEEPLV 130 ++RL + TSG L+ G D+ L+ YR+ +Q++FQDP++SLNP + + + EP+ Sbjct: 66 IIRLHDVTSGNVLFDGKDIASLKESELKEYRKRMQIIFQDPYASLNPAMNVFQIISEPMN 125 Query: 131 IHGIGSPEERMRRAMDILQTVGMQMEHYYRLPHELSGGQRQRIGLARALILNPKIVVCDE 190 IHG EE+ +D+L+ VG++ EH YR PHE SGGQRQRI +ARAL + P ++CDE Sbjct: 126 IHGSYEKEEQKEIILDLLKKVGLKEEHLYRYPHEFSGGQRQRISIARALSVKPDFILCDE 185 Query: 191 PVSALDVIIQSQIINLMRKLQDELGLTYLFIAHDIGVVRHISDRIGIMYLGKLVEEADTD 250 P+SALDV +Q+Q++N+++ +Q+E G+TYLFIAHD+ +VRHISDRIG+MYLG +VE AD++ Sbjct: 186 PISALDVSVQAQVVNMLQDIQEETGVTYLFIAHDLSMVRHISDRIGVMYLGNIVEIADSE 245 Query: 251 SLFANPLHPYTQVLLSAVPAPDPTRI-KERIILQXXXXXXXXXXXXCAFHTRCPYALEKC 309 L+ P HPYTQ LLS++P PDPT I KERIIL+ C F TRC +A EKC Sbjct: 246 DLYTKPAHPYTQALLSSMPEPDPTNIGKERIILEGEVPSPLNSPSGCKFRTRCKFATEKC 305 Query: 310 ASEVPIQRSVAPGHRVACHV 329 A EVP +A GH VACH+ Sbjct: 306 AQEVPKMVEIAKGHEVACHL 325 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.138 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 466,833,221 Number of extensions: 18720328 Number of successful extensions: 110396 Number of sequences better than 1.0e-05: 18841 Number of HSP's gapped: 90321 Number of HSP's successfully gapped: 20120 Length of query: 332 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 206 Effective length of database: 415,135,104 Effective search space: 85517831424 Effective search space used: 85517831424 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)