BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0520.0053.p (336 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_240894.1| oligopeptide ABC transporter (ATP-binding prote... 384 e-105 ref|NP_693991.1| oligopeptide ABC transporter ATP-binding protei... 383 e-105 ref|NP_658524.1| ABC_tran, ABC transporter [Bacillus anthracis A... 382 e-105 emb|CAD31597.1| PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDING ABC... 364 2e-99 ref|NP_767996.1| peptide ABC transporter ATP-binding protein [Br... 355 9e-97 >ref|NP_240894.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||D83653 oligopeptide ABC transporter (ATP-binding protein) BH0028 [imported] - Bacillus halodurans (strain C-125) dbj|BAB03747.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 347 Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust. Identities = 184/320 (57%), Positives = 239/320 (74%), Gaps = 5/320 (1%) Query: 6 ILEIKELRTLFHTERGTVPAVDGVSLQIEAGEIVGIVGESGCGKSVTAQSVLRLLDEKRQ 65 ILE+++LRT F TE V AVDGV+ + G+ +GIVGESG GKS+T+ S+L+L+ E + Sbjct: 12 ILEVRDLRTSFFTEAFEVKAVDGVTFSVPKGKTLGIVGESGSGKSITSLSILKLIQEPGK 71 Query: 66 VSYEGEIRYNGQDLLKLTPKQMRDVRGNAISMVFQDPLSSLNPVYTIGEQIVETLRLHQS 125 V GEI + G++L+ MR +RGN ISM+FQ+P++SLNPVYT+G+QI E+ R+H+ Sbjct: 72 V-VGGEINFKGENLVTKNEAYMRKIRGNEISMIFQEPMTSLNPVYTVGQQISESFRIHEK 130 Query: 126 IGKKAAWARAVELLKLTGIPAPERRVHDYPHQLSGGMRQRVMIAIALACEPKLLVXXXDE 185 +GKK A R+V++LKL GIP+PE+RVH YPH+LSGGMRQRVMIA+ALAC P+LL+ DE Sbjct: 131 LGKKEALKRSVDMLKLVGIPSPEKRVHQYPHELSGGMRQRVMIAMALACNPELLI--ADE 188 Query: 186 PTTALDVTIQAQILDLLTSLNKKLGMSVMFITHDLGVVAEVCSRVVVMYLGQVVEMADVR 245 PTTALDVTIQAQIL+L+ L +LGMS++ ITHDLGVVAE C V VMY G+VVE ADV+ Sbjct: 189 PTTALDVTIQAQILELMKDLQDRLGMSIIMITHDLGVVAETCDYVAVMYCGKVVEYADVK 248 Query: 246 TLFAQPLHPYTRGLMRAVPRLDGD-RSRELEAIQGSVPSLHQIPEGCRFAPRCAYADDQC 304 TLF P HPYT GL+ ++PR D D EL I+G+VPS +PEGCRFAPRC +A D C Sbjct: 249 TLFKNPRHPYTVGLLNSLPRHDIDLEDEELSVIKGNVPSPADMPEGCRFAPRCPFASDIC 308 Query: 305 RAKMPALEVLPGTTTAVRCW 324 + ++P LE +RCW Sbjct: 309 KERLPDLET-DENGNQIRCW 327 >ref|NP_693991.1| oligopeptide ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC15025.1| oligopeptide ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] Length = 347 Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust. Identities = 183/327 (55%), Positives = 243/327 (74%), Gaps = 5/327 (1%) Query: 6 ILEIKELRTLFHTERGTVPAVDGVSLQIEAGEIVGIVGESGCGKSVTAQSVLRLLDEKRQ 65 ILEI EL+T F T+ V AVDGVS I G+++G+VGESG GKS+T+ S+LRL++E + Sbjct: 11 ILEINELQTSFFTKDLEVKAVDGVSFSIPRGKVLGVVGESGSGKSITSLSILRLIEEPGK 70 Query: 66 VSYEGEIRYNGQDLLKLTPKQMRDVRGNAISMVFQDPLSSLNPVYTIGEQIVETLRLHQS 125 + GEI++ G++LL + QMR +RGN ISM+FQ+P++SLNP +T+G+QI E ++HQ Sbjct: 71 IK-GGEIKFKGENLLNKSESQMRKIRGNEISMIFQEPMTSLNPTFTVGQQIGEAYKIHQG 129 Query: 126 IGKKAAWARAVELLKLTGIPAPERRVHDYPHQLSGGMRQRVMIAIALACEPKLLVXXXDE 185 + KK A R++E+LKL GIP+PE+RV YPH+LSGGMRQRVMIA+ALAC P LL+ DE Sbjct: 130 LNKKEAKQRSIEMLKLVGIPSPEKRVDQYPHELSGGMRQRVMIAMALACNPDLLIA--DE 187 Query: 186 PTTALDVTIQAQILDLLTSLNKKLGMSVMFITHDLGVVAEVCSRVVVMYLGQVVEMADVR 245 PTTALDVTIQAQILDL+ L ++L M V+ ITHDLGVVAE C V VMY G+VVE D + Sbjct: 188 PTTALDVTIQAQILDLIKDLQEQLDMGVLLITHDLGVVAETCDYVAVMYCGKVVEFTDKK 247 Query: 246 TLFAQPLHPYTRGLMRAVPRLDGDRSRELEAIQGSVPSLHQIPEGCRFAPRCAYADDQCR 305 +LF+ P HPYT GLM+++P+ D D +L I+GSVPS ++P+GCRFAPRC +A D C Sbjct: 248 SLFSSPKHPYTVGLMQSIPQHDKDVEGDLSVIKGSVPSPAEMPKGCRFAPRCPFATDLCH 307 Query: 306 AKMPALEVLPGTTTAVRCW-HADEMSG 331 K+P LE +RCW ++DE +G Sbjct: 308 EKLPNLET-DENGNQIRCWIYSDEWNG 333 >ref|NP_658524.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_846943.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP28429.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 338 Score = 382 bits (981), Expect = e-105, Method: Compositional matrix adjust. Identities = 178/331 (53%), Positives = 240/331 (72%), Gaps = 4/331 (1%) Query: 6 ILEIKELRTLFHTERGTVPAVDGVSLQIEAGEIVGIVGESGCGKSVTAQSVLRLLDEKRQ 65 +L++K+L+T F T+ G AVDG++ I GE +GIVGESGCGKS+T+ S++RL+D + Sbjct: 7 VLQVKDLKTHFFTDEGVSKAVDGLNFSISKGETLGIVGESGCGKSITSLSIMRLIDRESG 66 Query: 66 VSYEGEIRYNGQDLLKLTPKQMRDVRGNAISMVFQDPLSSLNPVYTIGEQIVETLRLHQS 125 EG I + G+DLL+ +MR +RGN ISM+FQ+P++SLNPVY++GEQI E +R+HQ Sbjct: 67 SKVEGNILFKGKDLLQQNESEMRAIRGNQISMIFQEPMTSLNPVYSVGEQIAEAIRIHQK 126 Query: 126 IGKKAAWARAVELLKLTGIPAPERRVHDYPHQLSGGMRQRVMIAIALACEPKLLVXXXDE 185 + KK AW +AV++LKL GIP+PE+R PH+LSGGMRQR+MIA+ALAC P LL+ DE Sbjct: 127 LSKKEAWNKAVDMLKLVGIPSPEKRAKQEPHELSGGMRQRIMIAMALACNPDLLI--ADE 184 Query: 186 PTTALDVTIQAQILDLLTSLNKKLGMSVMFITHDLGVVAEVCSRVVVMYLGQVVEMADVR 245 PTTALDVTIQAQIL L+ SL K+LGM ++ ITHDLGVV+E C RV VMY G++VE AD+ Sbjct: 185 PTTALDVTIQAQILSLMKSLQKQLGMGIIMITHDLGVVSETCDRVAVMYAGKIVEYADIE 244 Query: 246 TLFAQPLHPYTRGLMRAVPRLDGDRSRELEAIQGSVPSLHQIPEGCRFAPRCAYADDQCR 305 +F P HPYT GL++++P LD D+ EL+ I GSVPS + +P GCRFA R +A + C Sbjct: 245 HIFTSPKHPYTIGLLQSLPSLDTDQ-EELQTIPGSVPSPYHMPSGCRFADRYTHAKELCH 303 Query: 306 AKMPALEVLPGTTTAVRCWHADEMSGKEDYE 336 +P L+ L + VRCW ++ K E Sbjct: 304 NTLPELQ-LTQDGSEVRCWMFTDLWDKSSSE 333 >emb|CAD31597.1| PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDING ABC TRANSPORTER PROTEIN [Mesorhizobium loti] Length = 335 Score = 364 bits (934), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 179/327 (54%), Positives = 240/327 (73%), Gaps = 5/327 (1%) Query: 6 ILEIKELRTLFHTERGTVPAVDGVSLQIEAGEIVGIVGESGCGKSVTAQSVLRLLDEKRQ 65 +L+++ L T F+ E A+ G+S Q++ GE +G+VGESGCGKSVTA S+LRLL + Sbjct: 12 LLDVRNLETHFYGEESVTRALGGISFQVKKGETLGVVGESGCGKSVTALSILRLLPKLTA 71 Query: 66 VSYEGEIRYNGQDLLKLTPKQMRDVRGNAISMVFQDPLSSLNPVYTIGEQIVETLRLHQS 125 + GEIR++G+DLL+L+ ++MR +RG+ I+M+FQ+P++SLNPVYT+G QI E +++H Sbjct: 72 RTVAGEIRFHGRDLLELSHREMRKIRGDQIAMIFQEPMTSLNPVYTVGHQIAEVVQIHTK 131 Query: 126 IGKKAAWARAVELLKLTGIPAPERRVHDYPHQLSGGMRQRVMIAIALACEPKLLVXXXDE 185 + A A+A E+L+L I PERRV++YPH++SGGMRQR MIA+ALAC P+LL+ DE Sbjct: 132 GPRSVAMAKAEEMLRLVRIADPERRVNNYPHEMSGGMRQRAMIAMALACSPELLI--ADE 189 Query: 186 PTTALDVTIQAQILDLLTSLNKKLGMSVMFITHDLGVVAEVCSRVVVMYLGQVVEMADVR 245 PTTALDVTIQAQIL L+ L +++G +VMFITHDLGVVAE C RV+VMY G++VE A+V Sbjct: 190 PTTALDVTIQAQILRLILDLKERMGTAVMFITHDLGVVAETCQRVIVMYAGRIVEQANVI 249 Query: 246 TLFAQPLHPYTRGLMRAVPRLDGDRSRELEAIQGSVPSLHQIPEGCRFAPRCAYADDQCR 305 LFA+P HPYT+GLMR+VP R R L I G VPSL + GC FAPRC +A D CR Sbjct: 250 DLFARPAHPYTQGLMRSVPDPRRGRQRRLPEIPGIVPSLREPIVGCSFAPRCPFAIDICR 309 Query: 306 AKMPAL-EVLPGTTTAVRCWHADEMSG 331 + P L +V PG A CW A+E+ G Sbjct: 310 ERTPVLDDVRPGHAAA--CWRAEEVMG 334 >ref|NP_767996.1| peptide ABC transporter ATP-binding protein [Bradyrhizobium japonicum] dbj|BAC46621.1| peptide ABC transporter ATP-binding protein [Bradyrhizobium japonicum USDA 110] Length = 331 Score = 355 bits (911), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 184/330 (55%), Positives = 232/330 (70%), Gaps = 7/330 (2%) Query: 5 PILEIKELRTLFHTERGTVPAVDGVSLQIEAGEIVGIVGESGCGKSVTAQSVLRLLDEKR 64 P+LEIK L+T F T+ G + AVDGV + I GE + +VGESGCGK+VTA S+L+L+ Sbjct: 3 PLLEIKGLKTHFSTDDGILQAVDGVDISINRGETLCVVGESGCGKTVTAMSILKLIAMPP 62 Query: 65 QVSYEGEIRYNGQDLLKLTPKQMRDVRGNAISMVFQDPLSSLNPVYTIGEQIVETLRLHQ 124 G+I + G+DL+ LT Q+ ++R I +FQ+P++SLNPV T+GEQI E+LR H+ Sbjct: 63 GRIAAGQIIFEGRDLVPLTSNQLDEIRAKEIGFIFQEPMTSLNPVLTVGEQIAESLRRHE 122 Query: 125 SIGKKAAWARAVELLKLTGIPAPERRVHDYPHQLSGGMRQRVMIAIALACEPKLLVXXXD 184 ++ KK A R +E+LKL IP E RVH+YPHQ SGGMRQRVMIA+ALAC+PKL++ D Sbjct: 123 AVTKKQALERTIEMLKLVQIPNAEGRVHNYPHQFSGGMRQRVMIAMALACKPKLII--AD 180 Query: 185 EPTTALDVTIQAQILDLLTSLNKKLGMSVMFITHDLGVVAEVCSRVVVMYLGQVVEMADV 244 EPTTALDVTIQAQILDLL + ++ GM+VM ITH +GVVAE RVVVMY G+VVE A V Sbjct: 181 EPTTALDVTIQAQILDLLQDMKERFGMAVMLITHAMGVVAETAQRVVVMYAGKVVEEASV 240 Query: 245 RTLFAQPLHPYTRGLMRAVPRLDGDRSRE--LEAIQGSVPSLHQIPEGCRFAPRCAYADD 302 LFA P HPYT+GL+R++PR+D D + LEAI GSVP L P GCRFAPRC +A + Sbjct: 241 DDLFADPRHPYTQGLIRSIPRIDLDSEHKTRLEAIGGSVPILINPPVGCRFAPRCKFAMN 300 Query: 303 QCRAKMPAL-EVLPGTTTAVRCWHADEMSG 331 C K P L EV PG A C D G Sbjct: 301 VCTEKEPLLREVSPGHRMA--CHLGDTQLG 328 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 458,576,600 Number of extensions: 17743898 Number of successful extensions: 117784 Number of sequences better than 1.0e-05: 14971 Number of HSP's gapped: 96882 Number of HSP's successfully gapped: 15901 Length of query: 336 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 210 Effective length of database: 415,135,104 Effective search space: 87178371840 Effective search space used: 87178371840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)