BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0520.0034.p
         (186 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_142961.1| hypothetical protein PH1052 [Pyrococcus horikos...   110   2e-23
ref|ZP_00181596.1| hypothetical protein Mther035401 [Moorella th...   103   3e-21
gb|EAE78128.1| unknown [environmental sequence]                        52   8e-06

>ref|NP_142961.1| hypothetical protein PH1052 [Pyrococcus horikoshii]
 pir||H71098 hypothetical protein PH1052 - Pyrococcus horikoshii
 dbj|BAA30150.1| 307aa long hypothetical protein [Pyrococcus horikoshii]
          Length = 307

 Score =  110 bits (274), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 103/175 (58%), Gaps = 14/175 (8%)

Query: 2   AGGFIAAARHPLPAKYIKEHAALGGISIALELGQAIIQAEPEGPEAVLKAVVRKTKGKIL 61
           AGG +A  R+P+   Y+KE+AA+G IS A+E+G+ I+  + E  +A+L+ +      K++
Sbjct: 137 AGGLVAVTRNPVTPDYVKENAAVGAISQAIEIGKVILDHKNE-VDAMLEKIF-----KVI 190

Query: 62  GRGKVISKNV------RYSGAFDIGTIDVEVAKNVFRLHVMNEYMAVDDRSSKRLATFPD 115
           G G+V+   V         G FDIG + ++  K  + +   NE+M ++D S KR ATFPD
Sbjct: 191 GGGRVVDNGVIEKVKLETKGGFDIGRVIIK-GKETYEITFWNEFMTLEDSSGKRYATFPD 249

Query: 116 VITTIDAATGLPVSVGDVVEGXXXXAVFAIDKSRIPLSASVKDPTVYPEVEEVLG 170
           +I  I+  TGLP++  +V EG     +  + K  + L + VKDP V  +VEEV+G
Sbjct: 250 LIVLINQNTGLPMTSAEVKEG-DKVVIATVPKDLLLLGSGVKDPEVLKQVEEVVG 303


>ref|ZP_00181596.1| hypothetical protein Mther035401 [Moorella thermoacetica ATCC
           39073]
          Length = 178

 Score =  103 bits (256), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 98/177 (55%), Gaps = 2/177 (1%)

Query: 2   AGGFIAAARHPLPAKYIKEHAALGGISIALELGQAIIQAEPEGPEAVLKAVVRKTKGKIL 61
           AGG +A AR+P+ A Y +E+AA G I   + +G+ II+    GP  V++ V    +G+I 
Sbjct: 3   AGGMVAVARNPVTAGYARENAAPGAIGRCIAVGRTIIENRSRGPLPVIEGVAGVLQGEIA 62

Query: 62  GRGKVISKNVRYSGAFDIGTIDVEVAKNVFRLHVMNEYMAVDDRSSKRLATFPDVITTID 121
             G+V + ++  +G FD+G + V     +  L   NEYM ++   S R  TFPD++ T+D
Sbjct: 63  FTGRVAAVDLETTGGFDVGRVVVRDGDRLAELTFWNEYMTLEI-GSVRKGTFPDLLATMD 121

Query: 122 AATGLPVSVGDVVEGXXXXAVFAIDKSRIPLSASVKDPTVYPEVEEVLGIDLQSYAF 178
             TGLP+S  ++  G    A+  + + R+ L   +K P ++  VE+  G ++  Y F
Sbjct: 122 LTTGLPLSSAEIKAG-QEIAILHVHRDRLILGRGMKAPELFQVVEKATGKEVIKYIF 177


>gb|EAE78128.1| unknown [environmental sequence]
          Length = 266

 Score = 51.6 bits (122), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 6/121 (4%)

Query: 12  PLPAKYIKEHAALGGISIALELGQAIIQAEPEGPEAVLKAVVRKTKGKILGRGKVISKNV 71
           P+   ++K +A    I+ AL LG+++I A  +  + + + V+    GK+L  GK++    
Sbjct: 122 PMKGSFVKSYAIPYTITQALSLGKSVINANKDNKDPI-QTVLAHENGKLLMTGKIVDLER 180

Query: 72  RYSGAFDIGTIDV----EVAKNVFRLHVMNEYMAVDDRSSKRLATFPDVITTIDAATGLP 127
              G F +G I +    E   +   + + NE++ V  +++K     PD+I  +D+ TG P
Sbjct: 181 HLKGGFAVGQILLEGFGEYKNDKGSIDLQNEFL-VFRKNNKMEVCVPDLIVVLDSETGFP 239

Query: 128 V 128
           +
Sbjct: 240 I 240


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.317    0.135    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 249,327,398
Number of extensions: 8820633
Number of successful extensions: 21248
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 21252
Number of HSP's successfully gapped: 3
Length of query: 186
Length of database: 757,237,578
Length adjustment: 118
Effective length of query: 68
Effective length of database: 436,855,896
Effective search space: 29706200928
Effective search space used: 29706200928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 122 (51.6 bits)