BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0520.0016.p (271 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_623936.1| ABC-type multidrug transport system, ATPase com... 254 1e-66 ref|ZP_00099383.1| COG1131: ABC-type multidrug transport system,... 247 2e-64 ref|NP_296037.1| ABC transporter, ATP-binding protein [Deinococc... 220 2e-56 ref|NP_682691.1| ABC transporter ATP-binding protein [Thermosyne... 218 9e-56 ref|NP_927156.1| probable ABC transporter ATP-binding protein [G... 213 4e-54 >ref|NP_623936.1| ABC-type multidrug transport system, ATPase component [Thermoanaerobacter tengcongensis] gb|AAM25540.1| ABC-type multidrug transport system, ATPase component [Thermoanaerobacter tengcongensis] Length = 300 Score = 254 bits (649), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 116/243 (47%), Positives = 178/243 (73%), Gaps = 2/243 (0%) Query: 5 AIEAQLLTKEYSNGRGCRDVSITVEKGEAFGFLGPNGAGKSTIVKMLAGLIRPTSGSAAL 64 +E Q LTK+++ G ++V+++VEKG+ FGFLGPNGAGKST VK + GL+ PTSG A + Sbjct: 2 VLETQNLTKQFNGKGGFKEVTLSVEKGQVFGFLGPNGAGKSTFVKTMVGLLHPTSGFAWI 61 Query: 65 FGHPVGTLAAKAKIGYLPELYRYQEWLTGEEVVRLHARLCGIDKSVADRRIPELLKEVGI 124 G P+GT+ ++ K+G+LPE +RY +W+TG+E++ HA L I ++I ELL+ V + Sbjct: 62 LGKPIGTVESREKVGFLPENFRYHDWMTGKELLTFHAELYKIKN--PGKKIDELLELVKL 119 Query: 125 GLRGRDRVKHYSKGMQQRLGLACALVNEPELVFLDEPSSALDPIGRMEVRTILERLKQRG 184 +K+YSKGMQQR+G+A AL+N+PE+VFLDEP+SALDP+GR++VR I+++LK +G Sbjct: 120 KGHENKLIKNYSKGMQQRIGIAIALLNDPEIVFLDEPTSALDPVGRIDVREIIKQLKSQG 179 Query: 185 ITIFLNSHLLEDVEVLCDRMALLNNGEILRHGKVTDILNKRTSWHFKVGGYSPFLLSWLI 244 T+FLNSHLL +VE++CD +A++N+G ++ GK+ D+L + T + Y+P L+ + Sbjct: 180 KTVFLNSHLLSEVEMVCDEVAIINHGRVIAQGKLDDLLKEHTHVEMVITDYTPELIEKIS 239 Query: 245 ELT 247 L+ Sbjct: 240 RLS 242 >ref|ZP_00099383.1| COG1131: ABC-type multidrug transport system, ATPase component [Desulfitobacterium hafniense] Length = 319 Score = 247 bits (631), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 115/241 (47%), Positives = 169/241 (70%) Query: 1 MNVPAIEAQLLTKEYSNGRGCRDVSITVEKGEAFGFLGPNGAGKSTIVKMLAGLIRPTSG 60 M+ I+ LTK Y GC DVS+ V G +GF+GPNGAGKST V+ L GLI PTSG Sbjct: 5 MSEFVIQTWNLTKHYDGKAGCSDVSLQVPPGVVYGFIGPNGAGKSTFVRTLLGLIHPTSG 64 Query: 61 SAALFGHPVGTLAAKAKIGYLPELYRYQEWLTGEEVVRLHARLCGIDKSVADRRIPELLK 120 A + GHP+ + A+AK+GYLPEL+RY +WLTG +++ LH L G+ + RRI L++ Sbjct: 65 RAEILGHPLNNVKARAKVGYLPELFRYPDWLTGAQLLELHGDLAGVPPAERQRRIQSLVE 124 Query: 121 EVGIGLRGRDRVKHYSKGMQQRLGLACALVNEPELVFLDEPSSALDPIGRMEVRTILERL 180 VG+ R +++++ YSKGMQQR+GLACAL+++PEL+FLDEP+SALDPIGR +VR ++ L Sbjct: 125 RVGLSGREQEKIRRYSKGMQQRIGLACALISDPELIFLDEPTSALDPIGRRDVRDLILAL 184 Query: 181 KQRGITIFLNSHLLEDVEVLCDRMALLNNGEILRHGKVTDILNKRTSWHFKVGGYSPFLL 240 ++ G T+FLNSHLL +VE +CD++A++N G++ G + + ++ + G + +L Sbjct: 185 RKEGKTVFLNSHLLAEVENVCDQVAIINQGKVAAQGDWRTLCDFKSEIKLRAQGLTQDIL 244 Query: 241 S 241 + Sbjct: 245 N 245 >ref|NP_296037.1| ABC transporter, ATP-binding protein [Deinococcus radiodurans] pir||H75288 ABC transporter, ATP-binding protein - Deinococcus radiodurans (strain R1) gb|AAF11860.1| ABC transporter, ATP-binding protein [Deinococcus radiodurans] Length = 327 Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 110/218 (50%), Positives = 154/218 (70%), Gaps = 2/218 (0%) Query: 6 IEAQLLTKEYSNGRGCRDVSITVEKGEAFGFLGPNGAGKSTIVKMLAGLIRPTSGSA-AL 64 IE + L K Y + +++TV GE FGFLGPNGAGKST VKML GL+ P+ G A L Sbjct: 16 IETRELRKVYRDRAVVDGLTLTVGAGEVFGFLGPNGAGKSTTVKMLLGLVIPSGGEARVL 75 Query: 65 FGHPVGTLAAKAKIGYLPELYRYQEWLTGEEVVRLHARLCGIDKSVADRRIPELLKEVGI 124 G P A +A++G+LPE +R+Q W+T EE + H +L G+ + R+P++L+EVG+ Sbjct: 76 CGSPADP-AVRARLGFLPEQFRFQLWMTAEEFLNFHGQLAGMKSNELRTRVPQVLEEVGL 134 Query: 125 GLRGRDRVKHYSKGMQQRLGLACALVNEPELVFLDEPSSALDPIGRMEVRTILERLKQRG 184 G RG +++ YSKGM QR GLA A++ P+LVFLDEP+SALDPIGR+EVR I+ERLK G Sbjct: 135 GGRGGEQLSGYSKGMLQRCGLAGAILARPQLVFLDEPTSALDPIGRVEVREIIERLKGEG 194 Query: 185 ITIFLNSHLLEDVEVLCDRMALLNNGEILRHGKVTDIL 222 + +FLNSHLL +VE +CDR+A + G +L+ G + +++ Sbjct: 195 VAVFLNSHLLSEVEQVCDRVAFVKAGRVLQQGSMRELM 232 >ref|NP_682691.1| ABC transporter ATP-binding protein [Thermosynechococcus elongatus BP-1] dbj|BAC09453.1| ABC transporter ATP-binding protein [Thermosynechococcus elongatus BP-1] Length = 319 Score = 218 bits (556), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 112/253 (44%), Positives = 162/253 (64%), Gaps = 10/253 (3%) Query: 4 PAIEAQLLTKEYSNG-------RGCRDVSITVEKGEAFGFLGPNGAGKSTIVKMLAGLIR 56 P + + L K Y G + +S+ V+ GE FG LGPNGAGK+T++K+L GL+R Sbjct: 11 PVVAVENLQKSYRTGFWLQTVLTPLKSISLQVQPGETFGLLGPNGAGKTTLLKILLGLVR 70 Query: 57 PTSGSAALFGHPVGTLAAKAKIGYLPELYRYQEWLTGEEVVRLHARLCGIDKSVADRRIP 116 P++GS L G+P+G A + +IGYLPE + ++LT E + A L G+ + RIP Sbjct: 71 PSAGSGTLLGYPLGDRAVRQRIGYLPENPYFYDYLTAWEFLEFTAGLFGLSAATCKERIP 130 Query: 117 ELLKEVGIGLRG--RDRVKHYSKGMQQRLGLACALVNEPELVFLDEPSSALDPIGRMEVR 174 LL+ VG+ L+ + +++ YSKGM QR+GLA AL+N+PE+VFLDEP S LDP+GR ++R Sbjct: 131 LLLEMVGLNLKDARKKQMRRYSKGMVQRVGLAQALINDPEVVFLDEPMSGLDPLGRYQIR 190 Query: 175 TILERLKQRGITIFLNSHLLEDVEVLCDRMALLNNGEILRHGKVTDILNKRTSWH-FKVG 233 I+ LKQ+G TIF NSH+L DVE +CDR+ +L GE++ G V ++L ++H G Sbjct: 191 EIILSLKQQGKTIFFNSHVLADVEAICDRVGILAQGELICAGTVDELLGSSQAYHVVGKG 250 Query: 234 GYSPFLLSWLIEL 246 G+ L WL L Sbjct: 251 GHVDGLQEWLYSL 263 >ref|NP_927156.1| probable ABC transporter ATP-binding protein [Gloeobacter violaceus] dbj|BAC92151.1| gll4210 [Gloeobacter violaceus PCC 7421] Length = 324 Score = 213 bits (541), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 114/253 (45%), Positives = 160/253 (63%), Gaps = 14/253 (5%) Query: 3 VPAIEAQLLTKEYSNG----------RGCRDVSITVEKGEAFGFLGPNGAGKSTIVKMLA 52 +PA+ + L+K + G RGC ++ V GE FG LGPNGAGK+T++K+L Sbjct: 16 LPALAVEGLSKSFRTGFWLNRVVSPLRGC---TLEVFAGETFGLLGPNGAGKTTLLKVLL 72 Query: 53 GLIRPTSGSAALFGHPVGTLAAKAKIGYLPELYRYQEWLTGEEVVRLHARLCGIDKSVAD 112 G++RP++G A L G P+G A KA++GYLPE + E+LTGEE +R L G+ V Sbjct: 73 GIVRPSAGKATLLGQPLGDAAVKARLGYLPENPYFYEYLTGEETLRFVGELFGLSGGVLA 132 Query: 113 RRIPELLKEVGIGLRGRDR-VKHYSKGMQQRLGLACALVNEPELVFLDEPSSALDPIGRM 171 RI LL VG+ R ++ YSKGM QR+GLA AL+N+P+LVFLDEP S LDP GR Sbjct: 133 GRISGLLDRVGLSREAARRPLRKYSKGMLQRIGLAQALINDPQLVFLDEPMSGLDPAGRR 192 Query: 172 EVRTILERLKQRGITIFLNSHLLEDVEVLCDRMALLNNGEILRHGKVTDILNKRTSWHFK 231 ++R I+ +L+ G T+F NSH+L DVEVLCDR+ LL G ++ G + ++L ++ + Sbjct: 193 QIREIILQLRAEGKTVFFNSHILTDVEVLCDRIGLLVQGALVSCGSLGELLGTEQTYSAE 252 Query: 232 VGGYSPFLLSWLI 244 V G S LS L+ Sbjct: 253 VAGASIAQLSHLL 265 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.140 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 397,324,822 Number of extensions: 16589993 Number of successful extensions: 110098 Number of sequences better than 1.0e-05: 17672 Number of HSP's gapped: 92945 Number of HSP's successfully gapped: 18714 Length of query: 271 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 147 Effective length of database: 420,565,302 Effective search space: 61823099394 Effective search space used: 61823099394 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 125 (52.8 bits)