BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0520.0006.p
         (141 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00045948.1| COG3599: Cell division initiation protein [La...    57   1e-07
ref|NP_965049.1| hypothetical protein LJ1194 [Lactobacillus john...    54   2e-06
ref|NP_390100.1| ypsB [Bacillus subtilis] >gi|1730957|sp|P50839|...    51   8e-06

>ref|ZP_00045948.1| COG3599: Cell division initiation protein [Lactobacillus gasseri]
          Length = 145

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 7/67 (10%)

Query: 31 ITLDALTIHEKEFSMKLRGYDAEEVDTFLDSVIKDYERFYATIADLMDKWQEQQIELREL 90
          I L+  +I +K+F  K++GYD++EVD++LD++I DY  F   I DL       Q ++ EL
Sbjct: 7  IQLNPQSILKKQFRTKMKGYDSDEVDSYLDTIISDYSTFATIIEDL-------QTQISEL 59

Query: 91 KEKSKQA 97
          K + KQA
Sbjct: 60 KAQQKQA 66


>ref|NP_965049.1| hypothetical protein LJ1194 [Lactobacillus johnsonii NCC 533]
 gb|AAS09015.1| hypothetical protein LJ1194 [Lactobacillus johnsonii NCC 533]
          Length = 145

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 7/66 (10%)

Query: 31 ITLDALTIHEKEFSMKLRGYDAEEVDTFLDSVIKDYERFYATIADLMDKWQEQQIELREL 90
          I L+  +I +K+F  K++GYD++EVD++LD++I DY  F   I DL       Q ++ +L
Sbjct: 7  IQLNPQSILKKQFRTKMKGYDSDEVDSYLDTIISDYSTFATIIEDL-------QTQISDL 59

Query: 91 KEKSKQ 96
          K + KQ
Sbjct: 60 KAQQKQ 65


>ref|NP_390100.1| ypsB [Bacillus subtilis]
 sp|P50839|YPSB_BACSU Hypothetical protein ypsB
 pir||E69941 hypothetical protein ypsB - Bacillus subtilis
 gb|AAB38472.1| putative
 emb|CAB14135.1| ypsB [Bacillus subtilis subsp. subtilis str. 168]
          Length = 98

 Score = 51.2 bits (121), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 5/67 (7%)

Query: 31 ITLDALTIHEKEFSMKLRGYDAEEVDTFLDSVIKDYERFYATIADLMDKWQEQQIEL-RE 89
          + L A  I EKEF   +RGY  E+VD FLD +IKDYE F+  I +L    Q++ ++L ++
Sbjct: 6  VKLSAKEILEKEFKTGVRGYKQEDVDKFLDMIIKDYETFHQEIEEL----QQENLQLKKQ 61

Query: 90 LKEKSKQ 96
          L+E SK+
Sbjct: 62 LEEASKK 68


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.317    0.134    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 174,399,863
Number of extensions: 6032680
Number of successful extensions: 23052
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 23055
Number of HSP's successfully gapped: 13
Length of query: 141
Length of database: 757,237,578
Length adjustment: 102
Effective length of query: 39
Effective length of database: 480,297,480
Effective search space: 18731601720
Effective search space used: 18731601720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)