BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0515.0037.p (717 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_561399.1| probable glycerol-3-phosphate cytidyltransferas... 133 1e-29 gb|EAI09724.1| unknown [environmental sequence] 130 1e-28 gb|EAF44834.1| unknown [environmental sequence] 130 2e-28 gb|EAA85319.1| unknown [environmental sequence] 127 1e-27 gb|EAI48636.1| unknown [environmental sequence] 125 4e-27 >ref|NP_561399.1| probable glycerol-3-phosphate cytidyltransferase [Clostridium perfringens] dbj|BAB80189.1| probable glycerol-3-phosphate cytidyltransferase [Clostridium perfringens str. 13] Length = 140 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 63/137 (45%), Positives = 96/137 (70%), Gaps = 4/137 (2%) Query: 579 KYNIGYVTGVFDLFHIGHLNILRKSKEQCEYLIAGVLTDELAEHDKRKRPFISFEERLAI 638 KY +GY TGVFD+FHIGHLNI++++KEQC YLI GV TDEL + K K+P I F ER I Sbjct: 3 KYKVGYTTGVFDMFHIGHLNIIKRAKEQCNYLIVGVSTDELVQEYKNKKPIIPFYERCEI 62 Query: 639 VQQIKYVDRAIAVDFHNTNKLEAWKQLRYDCHFSGTDHEQEWYW--LQKQLQTLGSNMEF 696 V+ ++YVD+ +A + N +K AWK+L +D F G D + + + ++++ + +G ++ + Sbjct: 63 VKALEYVDKVVAQE--NRDKFWAWKKLNFDVMFVGDDWKGKSLFVEVEEEFKKVGVDIVY 120 Query: 697 IPYTESTSSTKLQQMIN 713 PYT+ TSST L++ +N Sbjct: 121 FPYTKDTSSTILREKLN 137 >gb|EAI09724.1| unknown [environmental sequence] Length = 137 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 61/136 (44%), Positives = 95/136 (69%), Gaps = 4/136 (2%) Query: 582 IGYVTGVFDLFHIGHLNILRKSKEQCEYLIAGVLTDELAEHDKRKRPFISFEERLAIVQQ 641 IGY TGVFDLFHIGHLNIL++++ +C++LI GV TDEL E K ++PFI F+ER+ +V+ Sbjct: 4 IGYTTGVFDLFHIGHLNILKRARLECDHLIVGVTTDELCESAKNQKPFIPFQERMDLVEA 63 Query: 642 IKYVDRAIAVDFHNTNKLEAWKQLRYDCHFSGTDHE--QEWYWLQKQLQTLGSNMEFIPY 699 +KYVD + + +K+EAW L++D F G D + ++W ++K+ G + + PY Sbjct: 64 VKYVDEVVPQTSY--DKMEAWNNLKFDKMFVGDDWKGTEQWNKIEKEFSQFGVEIIYFPY 121 Query: 700 TESTSSTKLQQMINKT 715 T TSST L+++++K+ Sbjct: 122 TTHTSSTILRKILSKS 137 >gb|EAF44834.1| unknown [environmental sequence] Length = 137 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 61/136 (44%), Positives = 94/136 (69%), Gaps = 4/136 (2%) Query: 582 IGYVTGVFDLFHIGHLNILRKSKEQCEYLIAGVLTDELAEHDKRKRPFISFEERLAIVQQ 641 IGY TGVFDLFHIGHLNIL++++ +C++LI GV TDEL E K ++PFI F+ER+ +V+ Sbjct: 4 IGYTTGVFDLFHIGHLNILKRARLECDHLIVGVTTDELCESAKNQKPFIPFQERMDLVEA 63 Query: 642 IKYVDRAIAVDFHNTNKLEAWKQLRYDCHFSGTDHE--QEWYWLQKQLQTLGSNMEFIPY 699 +KYVD + + +K+EAW L++D F G D + +W ++K+ G + + PY Sbjct: 64 VKYVDEVVPQTSY--DKMEAWNNLKFDKMFVGDDWKGTDQWNQIEKEFSQFGVEIIYFPY 121 Query: 700 TESTSSTKLQQMINKT 715 T TSST L+++++K+ Sbjct: 122 TTHTSSTILRKILSKS 137 >gb|EAA85319.1| unknown [environmental sequence] Length = 137 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 60/136 (44%), Positives = 93/136 (68%), Gaps = 4/136 (2%) Query: 582 IGYVTGVFDLFHIGHLNILRKSKEQCEYLIAGVLTDELAEHDKRKRPFISFEERLAIVQQ 641 IGY TGVFDLFHIGHLNIL++++ +C++LI GV TDEL E K ++PFI F+ER+ +V+ Sbjct: 4 IGYTTGVFDLFHIGHLNILKRARLECDHLIVGVTTDELCESAKNQKPFIPFQERMDLVEA 63 Query: 642 IKYVDRAIAVDFHNTNKLEAWKQLRYDCHFSGTDHE--QEWYWLQKQLQTLGSNMEFIPY 699 +KYVD + + +K+EAW L++D F G D + +W +++ G + + PY Sbjct: 64 VKYVDEVVPQTSY--DKMEAWNNLKFDKMFVGDDWKGTDQWNQIEEDFSQYGVEIVYFPY 121 Query: 700 TESTSSTKLQQMINKT 715 T TSST L+++++K+ Sbjct: 122 TTHTSSTILREILSKS 137 >gb|EAI48636.1| unknown [environmental sequence] Length = 137 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 59/136 (43%), Positives = 93/136 (68%), Gaps = 4/136 (2%) Query: 582 IGYVTGVFDLFHIGHLNILRKSKEQCEYLIAGVLTDELAEHDKRKRPFISFEERLAIVQQ 641 IGY TGVFDLFHIGHLNIL++++ +C++LI GV TDEL + K ++PFI F+ER+ +V+ Sbjct: 4 IGYTTGVFDLFHIGHLNILKRARLECDHLIVGVTTDELCQSAKNQKPFIPFQERMDLVEA 63 Query: 642 IKYVDRAIAVDFHNTNKLEAWKQLRYDCHFSGTDHE--QEWYWLQKQLQTLGSNMEFIPY 699 +KYVD + + +K+EAW L++D F G D + +W +++ G + + PY Sbjct: 64 VKYVDEVVPQTSY--DKMEAWNNLKFDKMFVGDDWKGTDQWNQIEEDFSPHGVEIVYFPY 121 Query: 700 TESTSSTKLQQMINKT 715 T TSST L+++++K+ Sbjct: 122 TTHTSSTILRKILSKS 137 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.139 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,103,449,481 Number of extensions: 48488842 Number of successful extensions: 103740 Number of sequences better than 1.0e-05: 96 Number of HSP's gapped: 103958 Number of HSP's successfully gapped: 99 Length of query: 717 Length of database: 757,237,578 Length adjustment: 133 Effective length of query: 584 Effective length of database: 396,129,411 Effective search space: 231339576024 Effective search space used: 231339576024 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)