BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0515.0036.p (373 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAK68915.1| putative galactopyranose mutase [Bacteroides frag... 509 e-143 gb|AAN64570.1| UDP-galactopyranose mutase [Streptococcus gordonii] 505 e-142 gb|AAK61905.1| EpsJ [Streptococcus thermophilus] >gi|22218141|gb... 495 e-139 gb|AAN63517.1| putative UDP-galactose mutase [Streptococcus ther... 492 e-138 gb|AAN63725.1| Eps6M [Streptococcus thermophilus] 492 e-138 >gb|AAK68915.1| putative galactopyranose mutase [Bacteroides fragilis] Length = 364 Score = 509 bits (1312), Expect = e-143, Method: Compositional matrix adjust. Identities = 238/359 (66%), Positives = 297/359 (82%), Gaps = 2/359 (0%) Query: 2 KYDYLIVGAGPYGAIFAHEAMKCNKTCLVIDKRDHIGGNIYTEQVEGINVHKYGAHIFHT 61 KYDYLIVGAG YG++FA++A + K CL+IDKR H GGNIY E +EGINVHKYGAHIFHT Sbjct: 4 KYDYLIVGAGLYGSVFAYKAQRNGKKCLLIDKRPHNGGNIYCENIEGINVHKYGAHIFHT 63 Query: 62 NDKEVWEYVNRFATFNRYTNSPIANFNGEIYNLPFNMNTFYRLWGVSDPTEAEKIIETQR 121 ++KEVW++VN FNRYTNSPIAN+ G++YNLPFNMNTFY LWG P EA+ IE QR Sbjct: 64 SNKEVWDFVNAIVEFNRYTNSPIANYKGKLYNLPFNMNTFYALWGTKTPEEAKMKIEEQR 123 Query: 122 LKCE--EPQNLEEQALSLVGRDIYEKLIKGYTEKQWGRDCKDLPAFIIKRLPVRFTWDNN 179 + P+NLEEQA+SLVG+DIYE LIKGYTEKQWGR +LPAFIIKRLPVRFT+DNN Sbjct: 124 REAGILTPKNLEEQAISLVGKDIYEILIKGYTEKQWGRKATELPAFIIKRLPVRFTFDNN 183 Query: 180 YFNDQYQGIPVGGYTGIIKKLLEGSEVRLNTDYFAQRDYFDHIATKTIYTGMLDEFFNYQ 239 YFND+YQGIPVGGY +I LL+G EVR NTD+F ++YF +A K ++TG +DE++NYQ Sbjct: 184 YFNDKYQGIPVGGYNKLINGLLDGIEVRTNTDFFQNKEYFKGLADKILFTGKIDEYYNYQ 243 Query: 240 FGPLEYRTLRFDSEILDQPNFQGNAVVNYTDKETPFTRIIEHKHFEFGTQPKTVVTREYS 299 FG LEYRT+ F++++LD N+QGNAVVNYT++E P+TRIIEHKHFEFGTQPKTV+++EYS Sbjct: 244 FGRLEYRTVEFETQVLDCENYQGNAVVNYTEREVPYTRIIEHKHFEFGTQPKTVISKEYS 303 Query: 300 KEYENGDEPYYPVNDLKNSARYLSYKELAEGEENVIFGGRLAEYKYYDMWQIVRNSLDA 358 E+++G EP+YPVND +N++ YL YK+L + E+NV+FGGRLAEYKYYDM IV +++ Sbjct: 304 SEWKDGSEPFYPVNDERNNSLYLEYKKLVDREKNVLFGGRLAEYKYYDMNVIVEKVINS 362 >gb|AAN64570.1| UDP-galactopyranose mutase [Streptococcus gordonii] Length = 367 Score = 505 bits (1300), Expect = e-142, Method: Compositional matrix adjust. Identities = 246/365 (67%), Positives = 292/365 (80%), Gaps = 6/365 (1%) Query: 3 YDYLIVGAGPYGAIFAHEAMKCNKTCLVIDKRDHIGGNIYTEQVEGINVHKYGAHIFHTN 62 YDYLIVGAG GAIFAHEA K K VIDKR+HIGGNIY E VEGINVHKYGAHIFHT+ Sbjct: 2 YDYLIVGAGLSGAIFAHEANKRGKKVKVIDKREHIGGNIYCENVEGINVHKYGAHIFHTS 61 Query: 63 DKEVWEYVNRFATFNRYTNSPIANFNGEIYNLPFNMNTFYRLWGVSDPTEAEKII--ETQ 120 +K+VW+YVN+FA FN Y NSPIAN+ G +YNLPFNMNTFY LWG P E + I +T Sbjct: 62 NKKVWDYVNQFAEFNNYINSPIANYQGHLYNLPFNMNTFYALWGTKTPQEVKDKIAEQTT 121 Query: 121 RLKCEEPQNLEEQALSLVGRDIYEKLIKGYTEKQWGRDCKDLPAFIIKRLPVRFTWDNNY 180 ++ EP+NLEEQA+ L+G D+YEKLIKGYTEKQWGR +LP FIIKRLPVR T+DNNY Sbjct: 122 HMQDVEPKNLEEQAIKLIGTDVYEKLIKGYTEKQWGRSATELPPFIIKRLPVRLTYDNNY 181 Query: 181 FNDQYQGIPVGGYTGIIKKLLEGSEVRLNTDYFAQRDYFDHIATKTIYTGMLDEFFNYQF 240 FND+YQGIP+GGY II+KLLEG EV LNTD+FA R + ATK ++TGM+D+FF+YQF Sbjct: 182 FNDRYQGIPIGGYNVIIEKLLEGIEVELNTDFFADRKNLEASATKIVFTGMIDQFFDYQF 241 Query: 241 GPLEYRTLRFDSEILDQPNFQGNAVVNYTDKETPFTRIIEHKHFEFGTQPKTVVTREYSK 300 G LEYR+LRF+ EILDQ N+QGNAVVNYT+++ P+TRIIEHKHFEFGTQ KTV+TREY Sbjct: 242 GELEYRSLRFEHEILDQENYQGNAVVNYTERDIPYTRIIEHKHFEFGTQDKTVITREYPA 301 Query: 301 EYENGDEPYYPVNDLKNSARYLSYKELAEGEEN--VIFGGRLAEYKYYDMWQIVRNSLDA 358 +++ GDEPYYP+ND KN+A Y Y LAE ++N VIF GRLA+YKYYDM V +LD Sbjct: 302 DWKRGDEPYYPINDAKNNAIYEQY--LAEAKKNGRVIFCGRLADYKYYDMHVTVERALDV 359 Query: 359 ARKEL 363 +EL Sbjct: 360 VEEEL 364 >gb|AAK61905.1| EpsJ [Streptococcus thermophilus] gb|AAM94592.1| epsJ [Streptococcus thermophilus] Length = 365 Score = 495 bits (1274), Expect = e-139, Method: Compositional matrix adjust. Identities = 234/363 (64%), Positives = 285/363 (78%), Gaps = 2/363 (0%) Query: 3 YDYLIVGAGPYGAIFAHEAMKCNKTCLVIDKRDHIGGNIYTEQVEGINVHKYGAHIFHTN 62 YDYLIVGAG GAIFAHEA K K VIDKRDHIGGNIY E VEGINVHKYGAHIFHT+ Sbjct: 2 YDYLIVGAGLSGAIFAHEATKRGKKVKVIDKRDHIGGNIYCEDVEGINVHKYGAHIFHTS 61 Query: 63 DKEVWEYVNRFATFNRYTNSPIANFNGEIYNLPFNMNTFYRLWGVSDPTEAEKII--ETQ 120 +K+VW+YVN+FA FN Y NSPIAN+ G +YNLPFNMNTFY +WG P E + I +T Sbjct: 62 NKKVWDYVNQFAEFNNYINSPIANYKGSLYNLPFNMNTFYAMWGTKTPQEVKDKIAEQTA 121 Query: 121 RLKCEEPQNLEEQALSLVGRDIYEKLIKGYTEKQWGRDCKDLPAFIIKRLPVRFTWDNNY 180 +K EP+NLEEQA+ L+G DIYEKLIKGYTEKQWGR DLP FIIKRLPVR T+DNNY Sbjct: 122 DMKDVEPKNLEEQAIKLIGPDIYEKLIKGYTEKQWGRSATDLPPFIIKRLPVRLTFDNNY 181 Query: 181 FNDQYQGIPVGGYTGIIKKLLEGSEVRLNTDYFAQRDYFDHIATKTIYTGMLDEFFNYQF 240 FND+YQGIP+GGY II+ +L EV L D+FA R+ + A K ++TGM+D++F+Y+ Sbjct: 182 FNDRYQGIPIGGYNVIIENMLGDVEVELGVDFFANREELEASAEKVVFTGMIDQYFDYKH 241 Query: 241 GPLEYRTLRFDSEILDQPNFQGNAVVNYTDKETPFTRIIEHKHFEFGTQPKTVVTREYSK 300 G LEYR+LRF+ E+LD+ N QGNAVVNYT++E P+TRIIEHKHFE+GTQPKTV+TREY Sbjct: 242 GELEYRSLRFEHEVLDEENHQGNAVVNYTEREIPYTRIIEHKHFEYGTQPKTVITREYPA 301 Query: 301 EYENGDEPYYPVNDLKNSARYLSYKELAEGEENVIFGGRLAEYKYYDMWQIVRNSLDAAR 360 +++ GDEPYYP+ND KN+A + Y+E AE + VIF GRLA+YKYYDM ++ +L+ Sbjct: 302 DWKRGDEPYYPINDEKNNAMFAKYQEEAEKNDKVIFCGRLADYKYYDMHVVIERALEVVE 361 Query: 361 KEL 363 KE Sbjct: 362 KEF 364 >gb|AAN63517.1| putative UDP-galactose mutase [Streptococcus thermophilus] Length = 364 Score = 492 bits (1267), Expect = e-138, Method: Compositional matrix adjust. Identities = 233/362 (64%), Positives = 284/362 (78%), Gaps = 2/362 (0%) Query: 4 DYLIVGAGPYGAIFAHEAMKCNKTCLVIDKRDHIGGNIYTEQVEGINVHKYGAHIFHTND 63 DYLIVGAG GAIFAHEA K K VIDKRDHIGGNIY E VEGINVHKYGAHIFHT++ Sbjct: 2 DYLIVGAGLSGAIFAHEATKRGKKVKVIDKRDHIGGNIYCEDVEGINVHKYGAHIFHTSN 61 Query: 64 KEVWEYVNRFATFNRYTNSPIANFNGEIYNLPFNMNTFYRLWGVSDPTEAEKII--ETQR 121 K+VW+YVN+FA FN Y NSPIAN+ G +YNLPFNMNTFY +WG P E + I +T Sbjct: 62 KKVWDYVNQFAEFNNYINSPIANYKGSLYNLPFNMNTFYAMWGTKTPQEVKDKIAEQTAD 121 Query: 122 LKCEEPQNLEEQALSLVGRDIYEKLIKGYTEKQWGRDCKDLPAFIIKRLPVRFTWDNNYF 181 +K EP+NLEEQA+ L+G DIYEKLIKGYTEKQWGR DLP FIIKRLPVR T+DNNYF Sbjct: 122 MKDVEPKNLEEQAIKLIGPDIYEKLIKGYTEKQWGRSATDLPPFIIKRLPVRLTFDNNYF 181 Query: 182 NDQYQGIPVGGYTGIIKKLLEGSEVRLNTDYFAQRDYFDHIATKTIYTGMLDEFFNYQFG 241 ND+YQGIP+GGY II+ +L EV L D+FA R+ + A K ++TGM+D++F+Y+ G Sbjct: 182 NDRYQGIPIGGYNVIIENMLGDVEVELGVDFFANREELEASAEKVVFTGMIDQYFDYKHG 241 Query: 242 PLEYRTLRFDSEILDQPNFQGNAVVNYTDKETPFTRIIEHKHFEFGTQPKTVVTREYSKE 301 LEYR+LRF+ E+LD+ N QGNAVVNYT++E P+TRIIEHKHFE+GTQPKTV+TREY + Sbjct: 242 ELEYRSLRFEHEVLDEENHQGNAVVNYTEREIPYTRIIEHKHFEYGTQPKTVITREYPAD 301 Query: 302 YENGDEPYYPVNDLKNSARYLSYKELAEGEENVIFGGRLAEYKYYDMWQIVRNSLDAARK 361 ++ GDEPYYP+ND KN+A + Y+E AE + VIF GRLA+YKYYDM ++ +L+ K Sbjct: 302 WKRGDEPYYPINDEKNNAMFAKYQEEAEKNDKVIFCGRLADYKYYDMHVVIERALEVVEK 361 Query: 362 EL 363 E Sbjct: 362 EF 363 >gb|AAN63725.1| Eps6M [Streptococcus thermophilus] Length = 365 Score = 492 bits (1266), Expect = e-138, Method: Compositional matrix adjust. Identities = 233/363 (64%), Positives = 285/363 (78%), Gaps = 2/363 (0%) Query: 3 YDYLIVGAGPYGAIFAHEAMKCNKTCLVIDKRDHIGGNIYTEQVEGINVHKYGAHIFHTN 62 YDYLIVGAG GAIFAHEA K K VIDKRDHIGGNIY E VEGINVHKYGAHIFHT+ Sbjct: 2 YDYLIVGAGLSGAIFAHEATKRGKKVKVIDKRDHIGGNIYCEDVEGINVHKYGAHIFHTS 61 Query: 63 DKEVWEYVNRFATFNRYTNSPIANFNGEIYNLPFNMNTFYRLWGVSDPTEAEKII--ETQ 120 +K+VW+YVN+FA FN Y NSPIAN+ G +YNLPFNMNTFY +WG P E + I +T Sbjct: 62 NKKVWDYVNQFAEFNNYINSPIANYKGSLYNLPFNMNTFYAMWGTKTPQEVKDKIAEQTA 121 Query: 121 RLKCEEPQNLEEQALSLVGRDIYEKLIKGYTEKQWGRDCKDLPAFIIKRLPVRFTWDNNY 180 +K EP+NLEEQA+ L+G DIYEKLIKGYTEKQWGR DLP FIIKRLPVR T+DNNY Sbjct: 122 DMKDVEPKNLEEQAIKLIGPDIYEKLIKGYTEKQWGRSATDLPPFIIKRLPVRLTFDNNY 181 Query: 181 FNDQYQGIPVGGYTGIIKKLLEGSEVRLNTDYFAQRDYFDHIATKTIYTGMLDEFFNYQF 240 FND+YQGIP+GGY II+ +L EV L D+FA R+ ++ A K ++TGM+D++F+Y+ Sbjct: 182 FNDRYQGIPIGGYNVIIENMLGDVEVELGVDFFANREELENSAEKVVFTGMIDQYFDYKH 241 Query: 241 GPLEYRTLRFDSEILDQPNFQGNAVVNYTDKETPFTRIIEHKHFEFGTQPKTVVTREYSK 300 G LEYR+L F+ E+LD+ N QGNAVVNYT++E P+TRIIEHKHFE+GTQPKTV+TREY Sbjct: 242 GELEYRSLHFEHEVLDEENHQGNAVVNYTEREIPYTRIIEHKHFEYGTQPKTVITREYPA 301 Query: 301 EYENGDEPYYPVNDLKNSARYLSYKELAEGEENVIFGGRLAEYKYYDMWQIVRNSLDAAR 360 +++ GDEPYYP+ND KN+A + Y+E AE + VIF GRLA+YKYYDM ++ +L+ Sbjct: 302 DWKRGDEPYYPINDEKNNAMFAKYQEEAEKNDMVIFCGRLADYKYYDMHVVIERALEVVA 361 Query: 361 KEL 363 KE Sbjct: 362 KEF 364 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.139 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 637,697,125 Number of extensions: 29634086 Number of successful extensions: 71397 Number of sequences better than 1.0e-05: 98 Number of HSP's gapped: 71134 Number of HSP's successfully gapped: 98 Length of query: 373 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 246 Effective length of database: 412,420,005 Effective search space: 101455321230 Effective search space used: 101455321230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)