BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0515.0020.p
         (65 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_244477.1| cold-shock protein [Bacillus halodurans] >gi|25...   119   2e-26
ref|NP_981590.1| cold shock protein CspC [Bacillus cereus ATCC 1...   114   6e-25
ref|NP_653638.1| cold, Cold Shock RNA binding domain of the OB f...   113   2e-24
ref|NP_847592.1| cold shock protein CspC [Bacillus anthracis str...   112   2e-24
ref|NP_691500.1| cold shock protein [Oceanobacillus iheyensis HT...   111   6e-24

>ref|NP_244477.1| cold-shock protein [Bacillus halodurans]
 pir||B84101 cold-shock protein cspC [imported] - Bacillus halodurans  (strain
          C-125)
 dbj|BAB07329.1| cold-shock protein [Bacillus halodurans]
          Length = 65

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/65 (89%), Positives = 60/65 (92%)

Query: 1  MEGKVKWFNAEKGYGFIETADGGDVFVHFSAIQTDGFKTLDEGQSVEFDIVEGARGPQAA 60
          M+GKVKWFNAEKG+GFIE  DG DVFVHFSAI TDGFKTLDEGQSVEFDIVEGARGPQAA
Sbjct: 1  MQGKVKWFNAEKGFGFIEREDGDDVFVHFSAINTDGFKTLDEGQSVEFDIVEGARGPQAA 60

Query: 61 NVIKL 65
          NV KL
Sbjct: 61 NVTKL 65


>ref|NP_981590.1| cold shock protein CspC [Bacillus cereus ATCC 10987]
 gb|AAS44198.1| cold shock protein CspC [Bacillus cereus ATCC 10987]
          Length = 67

 Score =  114 bits (285), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 53/65 (81%), Positives = 60/65 (92%)

Query: 1  MEGKVKWFNAEKGYGFIETADGGDVFVHFSAIQTDGFKTLDEGQSVEFDIVEGARGPQAA 60
          M+G+VKWFNAEKG+GFIE  DG DVFVHFSAIQ DG+K+L+EGQ VEFDIVEGARGPQAA
Sbjct: 3  MQGRVKWFNAEKGFGFIEREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIVEGARGPQAA 62

Query: 61 NVIKL 65
          NV+KL
Sbjct: 63 NVVKL 67


>ref|NP_653638.1| cold, Cold Shock RNA binding domain of the OB fold [Bacillus
          anthracis A2012]
 ref|NP_834855.1| Cold shock protein [Bacillus cereus ATCC 14579]
 gb|AAP12056.1| Cold shock protein [Bacillus cereus ATCC 14579]
          Length = 67

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 60/65 (92%)

Query: 1  MEGKVKWFNAEKGYGFIETADGGDVFVHFSAIQTDGFKTLDEGQSVEFDIVEGARGPQAA 60
          M+G+VKWFNAEKG+GFIE  DG DVFVHFSAIQ DG+K+L+EGQ VEFDIV+GARGPQAA
Sbjct: 3  MQGRVKWFNAEKGFGFIEREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQAA 62

Query: 61 NVIKL 65
          NV+KL
Sbjct: 63 NVVKL 67


>ref|NP_847592.1| cold shock protein CspC [Bacillus anthracis str. Ames]
 sp|Q45098|CSPC_BACAA Cold shock-like protein cspC
 emb|CAA63609.1| CspC protein [Bacillus cereus]
 gb|AAP29078.1| cold shock protein CspC [Bacillus anthracis str. Ames]
          Length = 65

 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 60/65 (92%)

Query: 1  MEGKVKWFNAEKGYGFIETADGGDVFVHFSAIQTDGFKTLDEGQSVEFDIVEGARGPQAA 60
          M+G+VKWFNAEKG+GFIE  DG DVFVHFSAIQ DG+K+L+EGQ VEFDIV+GARGPQAA
Sbjct: 1  MQGRVKWFNAEKGFGFIEREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQAA 60

Query: 61 NVIKL 65
          NV+KL
Sbjct: 61 NVVKL 65


>ref|NP_691500.1| cold shock protein [Oceanobacillus iheyensis HTE831]
 dbj|BAC12535.1| cold shock protein [Oceanobacillus iheyensis HTE831]
          Length = 65

 Score =  111 bits (277), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 53/65 (81%), Positives = 58/65 (89%)

Query: 1  MEGKVKWFNAEKGYGFIETADGGDVFVHFSAIQTDGFKTLDEGQSVEFDIVEGARGPQAA 60
          M GKVKWFNAEKG+GFIE  DG DVFVHFSAIQ DGFKTL+EGQ VEF+IVEG RGPQAA
Sbjct: 1  MTGKVKWFNAEKGFGFIEREDGDDVFVHFSAIQADGFKTLEEGQDVEFEIVEGNRGPQAA 60

Query: 61 NVIKL 65
          NV++L
Sbjct: 61 NVVRL 65


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.317    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 99,723,491
Number of extensions: 3192385
Number of successful extensions: 8065
Number of sequences better than 1.0e-05: 859
Number of HSP's gapped: 7514
Number of HSP's successfully gapped: 862
Length of query: 65
Length of database: 757,237,578
Length adjustment: 36
Effective length of query: 29
Effective length of database: 659,494,014
Effective search space: 19125326406
Effective search space used: 19125326406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)