BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0514.0021.p (109 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_693868.1| hydroxymyristoyl-[acyl carrier protein] dehydra... 144 6e-34 ref|NP_653715.1| Thioester_dehyd, Thioester dehydrase [Bacillus ... 138 3e-32 ref|NP_471997.1| similar to hydroxymyristoyl-(acyl carrier prote... 136 2e-31 ref|NP_466047.1| similar to hydroxymyristoyl-(acyl carrier prote... 136 2e-31 ref|NP_244602.1| hydroxymyristoyl-(acyl carrier protein) dehydra... 135 3e-31 >ref|NP_693868.1| hydroxymyristoyl-[acyl carrier protein] dehydratase [Oceanobacillus iheyensis HTE831] sp|Q8EMB1|FABZ_OCEIH (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase ((3R)-hydroxymyristoyl ACP dehydrase) dbj|BAC14902.1| hydroxymyristoyl-[acyl carrier protein] dehydratase [Oceanobacillus iheyensis HTE831] Length = 140 Score = 144 bits (363), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 66/103 (64%), Positives = 79/103 (76%) Query: 1 VTFNEPYFLGHFSDYPVMPGVLIVEALAQVGGIAMSNVERNNHTIGLLTGIDNCRFKKQV 60 V+ NEP+F GHF +YPVMPGVLI+EALAQ G IA+ N+E N IG L G+D CRFK+QV Sbjct: 38 VSVNEPFFQGHFPEYPVMPGVLILEALAQTGAIAVLNIEENKGKIGFLAGVDKCRFKRQV 97 Query: 61 KPGDQLHLEFEVTRTKGQIVKGTGIATVNNEMVCEAEIMFAFN 103 KPGDQL+L+ E+ R KG I KG GIATV+ E+ CEAEI FA Sbjct: 98 KPGDQLNLQVEIIRMKGPIGKGKGIATVDGEVACEAEITFAIK 140 >ref|NP_653715.1| Thioester_dehyd, Thioester dehydrase [Bacillus anthracis A2012] ref|NP_847667.1| (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase [Bacillus anthracis str. Ames] sp|Q81JE0|FABZ_BACAA (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase ((3R)-hydroxymyristoyl ACP dehydrase) gb|AAP29153.1| (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase [Bacillus anthracis str. Ames] Length = 144 Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 65/104 (62%), Positives = 74/104 (71%) Query: 1 VTFNEPYFLGHFSDYPVMPGVLIVEALAQVGGIAMSNVERNNHTIGLLTGIDNCRFKKQV 60 VT NE +F GHF DYPVMPGVLIVEALAQVG +AM E N + GIDNCRFK+QV Sbjct: 38 VTANEEFFNGHFPDYPVMPGVLIVEALAQVGAVAMLKKEENRGRLAFFAGIDNCRFKRQV 97 Query: 61 KPGDQLHLEFEVTRTKGQIVKGTGIATVNNEMVCEAEIMFAFNS 104 +PGDQL LE E+TR +G I KG IATV+ E+ CE EI FA Sbjct: 98 RPGDQLRLEVEMTRVRGAIGKGKAIATVDGEIACETEITFALGD 141 >ref|NP_471997.1| similar to hydroxymyristoyl-(acyl carrier protein) dehydratase [Listeria innocua] sp|Q927W9|FABZ_LISIN (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase ((3R)-hydroxymyristoyl ACP dehydrase) pir||AF1765 hydroxymyristoyl-(acyl carrier protein) dehydratase homolog lin2668 [imported] - Listeria innocua (strain Clip11262) emb|CAC97894.1| lin2668 [Listeria innocua] Length = 144 Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 66/105 (62%), Positives = 75/105 (71%) Query: 1 VTFNEPYFLGHFSDYPVMPGVLIVEALAQVGGIAMSNVERNNHTIGLLTGIDNCRFKKQV 60 VT NE +F GHF +YPVMPGVLIVEALAQ GIAM E N IGL GID CRFK+QV Sbjct: 38 VTANEEFFNGHFPEYPVMPGVLIVEALAQTSGIAMMQSEANKGKIGLFAGIDGCRFKRQV 97 Query: 61 KPGDQLHLEFEVTRTKGQIVKGTGIATVNNEMVCEAEIMFAFNSI 105 PGDQL LE E+TR +G I K ATV ++VCEAEIMFA + + Sbjct: 98 VPGDQLLLEAEITRMRGAIAKAKVKATVEGDLVCEAEIMFALSDL 142 >ref|NP_466047.1| similar to hydroxymyristoyl-(acyl carrier protein) dehydratase [Listeria monocytogenes EGD-e] sp|Q8Y4C6|FABZ_LISMO (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase ((3R)-hydroxymyristoyl ACP dehydrase) pir||AD1390 hydroxymyristoyl-(acyl carrier protein) dehydratase homolog lmo2524 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00602.1| lmo2524 [Listeria monocytogenes] Length = 144 Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 66/105 (62%), Positives = 75/105 (71%) Query: 1 VTFNEPYFLGHFSDYPVMPGVLIVEALAQVGGIAMSNVERNNHTIGLLTGIDNCRFKKQV 60 VT NE +F GHF +YPVMPGVLIVEALAQ GIAM E N IGL GID CRFK+QV Sbjct: 38 VTANEEFFNGHFPEYPVMPGVLIVEALAQTSGIAMMQSEANKGKIGLFAGIDGCRFKRQV 97 Query: 61 KPGDQLHLEFEVTRTKGQIVKGTGIATVNNEMVCEAEIMFAFNSI 105 PGDQL LE E+TR +G I K ATV ++VCEAEIMFA + + Sbjct: 98 VPGDQLLLEAEITRMRGAIAKAKVKATVEGDLVCEAEIMFALSDL 142 >ref|NP_244602.1| hydroxymyristoyl-(acyl carrier protein) dehydratase [Bacillus halodurans] sp|Q9K6J4|FABZ_BACHD (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase ((3R)-hydroxymyristoyl ACP dehydrase) pir||G84116 hydroxymyristoyl-(acyl carrier protein) dehydratase BH3735 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07454.1| hydroxymyristoyl-(acyl carrier protein) dehydratase [Bacillus halodurans] Length = 140 Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 64/103 (62%), Positives = 75/103 (72%) Query: 1 VTFNEPYFLGHFSDYPVMPGVLIVEALAQVGGIAMSNVERNNHTIGLLTGIDNCRFKKQV 60 VT NE +F GHF DYPVMPGVLIVEALAQVG A+ NVE N + GIDNCRFK+QV Sbjct: 38 VTVNEDFFNGHFPDYPVMPGVLIVEALAQVGACAILNVEENKGKLAFFAGIDNCRFKEQV 97 Query: 61 KPGDQLHLEFEVTRTKGQIVKGTGIATVNNEMVCEAEIMFAFN 103 KPGDQL LE E+ R KG + KG G+A+VN + V E ++MFA Sbjct: 98 KPGDQLRLEVEIVRMKGPVGKGRGVASVNGKTVAETDLMFAIK 140 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.138 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 158,671,291 Number of extensions: 5424729 Number of successful extensions: 12140 Number of sequences better than 1.0e-05: 429 Number of HSP's gapped: 11891 Number of HSP's successfully gapped: 429 Length of query: 109 Length of database: 757,237,578 Length adjustment: 75 Effective length of query: 34 Effective length of database: 553,605,153 Effective search space: 18822575202 Effective search space used: 18822575202 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 120 (50.8 bits)