BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0514.0013.p (323 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_357576.1| AGR_L_3564p [Agrobacterium tumefaciens] >gi|179... 241 2e-62 dbj|BAB03315.1| AlgM1 [Sphingomonas sp.] 237 2e-61 ref|NP_241931.1| BH1065~unknown conserved protein [Bacillus halo... 237 3e-61 ref|NP_694131.1| hypothetical protein OB3209 [Oceanobacillus ihe... 230 3e-59 ref|NP_241350.1| transmembrane lipoprotein [Bacillus halodurans]... 229 9e-59 >ref|NP_357576.1| AGR_L_3564p [Agrobacterium tumefaciens] ref|NP_533522.1| ABC transporter, membrane spanning protein [sugar] [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||G98354 algM1 (AB011415) [imported] - Agrobacterium tumefaciens (strain C58, Cereon) pir||AH2927 hypothetical protein Atu3022 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAK90361.1| AGR_L_3564p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL43838.1| ABC transporter, membrane spanning protein [sugar] [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 309 Score = 241 bits (615), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 121/277 (43%), Positives = 177/277 (63%), Gaps = 3/277 (1%) Query: 47 FKLAPLGGMIIAFQDFSAFRGVLGSPFVGLEHFQRIFEDPYIWTLVKNTIILAFYSLLFT 106 F P+ G++IAFQDFS FRG+ SP+VG +F +F + NTI ++ L+F Sbjct: 36 FLYKPMYGLVIAFQDFSIFRGIEKSPWVGFANFVELFRNDMFVRSFWNTITISGLGLIFA 95 Query: 107 FPIPILFALLLNEVRVRWIKGSVQSLSFLPYFISSAVMVSILYTLLSPSTGLVNDILARF 166 FP+PI+ AL+ NEV+ + Q++ +LP+FIS ++ I+ LSPS G+VN +L Sbjct: 96 FPVPIILALMFNEVQNGTARSWAQTVVYLPHFISVVIVAGIVINFLSPSIGIVNLMLKGL 155 Query: 167 GLDTIYFVAEPGWFRSNYVLLQVWQTFGYSAIVYIAAMAAIDPSVYESASLDGASRFQQM 226 G + IYF+ +P WFR Y+ VW+ G+ +IVY+AA+A + P++YESA +DGASR+Q M Sbjct: 156 GFEPIYFLTQPEWFRPVYIGSSVWKEAGFESIVYLAAIAGVSPTLYESARVDGASRWQMM 215 Query: 227 LHITLPSLKPTIAIMLIISVGNIFTVDLDRILLMYNQSVYETADVIQTYVYRLAFASTGF 286 ITLP + PTI IMLII +GN+ V + I+L+Y S YETADV+ T++YR T Sbjct: 216 WRITLPCILPTIVIMLIIRIGNLVEVGFEYIILLYRPSTYETADVVSTFIYRTGLQGT-- 273 Query: 287 PEYSYGTAVNLLKSVVAYILVVGTNKLSTKYSDTRLF 323 +Y TA L +V+A++LV N++S K S T L+ Sbjct: 274 -QYDLATAAGLFNAVIAFVLVYSANRISRKVSSTSLW 309 >dbj|BAB03315.1| AlgM1 [Sphingomonas sp.] Length = 324 Score = 237 bits (605), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 117/277 (42%), Positives = 189/277 (68%), Gaps = 3/277 (1%) Query: 47 FKLAPLGGMIIAFQDFSAFRGVLGSPFVGLEHFQRIFEDPYIWTLVKNTIILAFYSLLFT 106 F P+ G+ +AF+ +SA++G+ GSP++G +HF +F+ +KNT+ L+ SLLF Sbjct: 51 FLYKPMIGLQMAFKQYSAWKGIAGSPWIGFDHFVTLFQSEQFIRAIKNTLTLSGLSLLFG 110 Query: 107 FPIPILFALLLNEVRVRWIKGSVQSLSFLPYFISSAVMVSILYTLLSPSTGLVNDILARF 166 FP+PIL AL++NEV + + +VQ++ +LP+FIS ++ ++ T LSPSTG+VN++L+ Sbjct: 111 FPMPILLALMINEVYSKGYRKAVQTIVYLPHFISIVIVAGLVVTFLSPSTGVVNNMLSWI 170 Query: 167 GLDTIYFVAEPGWFRSNYVLLQVWQTFGYSAIVYIAAMAAIDPSVYESASLDGASRFQQM 226 GLD +YF+ +P WFR Y+ +W+ G+ +IVY+AA+ +I+P++YESA +DGA+R+Q + Sbjct: 171 GLDRVYFLTQPEWFRPIYISSNIWKEAGFDSIVYLAAIMSINPALYESAQVDGATRWQMI 230 Query: 227 LHITLPSLKPTIAIMLIISVGNIFTVDLDRILLMYNQSVYETADVIQTYVYRLAFASTGF 286 ITLP + PTIA++L+I +G+I V + I+L+Y + YETADVI TY+YRL Sbjct: 231 TRITLPCIVPTIAVLLVIRLGHILEVGFEYIILLYQPTTYETADVISTYIYRLGLQGA-- 288 Query: 287 PEYSYGTAVNLLKSVVAYILVVGTNKLSTKYSDTRLF 323 Y TA + +VVA ++V+ N +S + + T +F Sbjct: 289 -RYDIATAAGIFNAVVALVIVLFANHMSRRITKTGVF 324 >ref|NP_241931.1| BH1065~unknown conserved protein [Bacillus halodurans] pir||A83783 hypothetical protein BH1065 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04784.1| BH1065~unknown conserved protein [Bacillus halodurans] Length = 317 Score = 237 bits (605), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 112/277 (40%), Positives = 190/277 (68%), Gaps = 3/277 (1%) Query: 47 FKLAPLGGMIIAFQDFSAFRGVLGSPFVGLEHFQRIFEDPYIWTLVKNTIILAFYSLLFT 106 F+ P+ G+++AFQD+ + G GS +VGL+HF +FE Y ++ NT++++ ++F Sbjct: 44 FQYGPMFGIVMAFQDYKPWLGFTGSEWVGLQHFITMFEYDYAKQVIWNTLVISVLKMIFG 103 Query: 107 FPIPILFALLLNEVRVRWIKGSVQSLSFLPYFISSAVMVSILYTLLSPSTGLVNDILARF 166 +PI+ ALLLNE+ +K +VQ++ +LPYF+S ++ IL +LSP G+VN L F Sbjct: 104 LIVPIIVALLLNEMYQMVVKRTVQTIIYLPYFLSWVILGGILIDVLSPDGGIVNQALGLF 163 Query: 167 GLDTIYFVAEPGWFRSNYVLLQVWQTFGYSAIVYIAAMAAIDPSVYESASLDGASRFQQM 226 G+D I+F+ WFR+ V+ +W+ G++ IV++AA+ A++P++YE+A +DGA+R++Q Sbjct: 164 GIDPIFFLGSNDWFRTTVVISDLWKETGFNTIVFLAAITAVNPNLYEAAVVDGANRWKQT 223 Query: 227 LHITLPSLKPTIAIMLIISVGNIFTVDLDRILLMYNQSVYETADVIQTYVYRLAFASTGF 286 LHITLP++ P I ++ +S+GNI D+I +YN VY+T D+I TYVYR++ + Sbjct: 224 LHITLPAMLPIIIVVATLSLGNILNAGFDQIFNLYNPLVYQTGDIIDTYVYRVSLVNG-- 281 Query: 287 PEYSYGTAVNLLKSVVAYILVVGTNKLSTKYSDTRLF 323 ++SYGTAV L KS+++ +L++ +L+ KY++ R+F Sbjct: 282 -DFSYGTAVGLFKSLISLVLIIIGYRLAYKYANWRIF 317 >ref|NP_694131.1| hypothetical protein OB3209 [Oceanobacillus iheyensis HTE831] dbj|BAC15165.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 311 Score = 230 bits (586), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 111/277 (40%), Positives = 178/277 (64%), Gaps = 4/277 (1%) Query: 47 FKLAPLGGMIIAFQDFSAFRGVLGSPFVGLEHFQRIFEDPYIWTLVKNTIILAFYSLLFT 106 F P+ G+ IAF+D+ A G+ GSP+VG EHF+R F Y W L+KNT++L Y +L Sbjct: 39 FHYIPMYGVQIAFKDYFANLGIWGSPWVGFEHFERFFSSYYFWRLLKNTLVLNLY-MLVL 97 Query: 107 FPIPILFALLLNEVRVRWIKGSVQSLSFLPYFISSAVMVSILYTLLSPSTGLVNDILARF 166 FP+PI+ AL NE+R K Q+L++ P+FIS V+V +L L P+TGL+N ++ Sbjct: 98 FPLPIILALAFNELRNGAYKKWTQTLTYAPHFISVVVVVGMLVAFLDPNTGLINHLIRAL 157 Query: 167 GLDTIYFVAEPGWFRSNYVLLQVWQTFGYSAIVYIAAMAAIDPSVYESASLDGASRFQQM 226 G++ I F+ P WFR +V WQT G+S I+Y+AA+A ++P ++E+A +DGA+R Q++ Sbjct: 158 GMEPIPFLTSPDWFRHIFVWSGQWQTLGWSTIIYLAALAGVNPELHEAAKVDGATRLQRI 217 Query: 227 LHITLPSLKPTIAIMLIISVGNIFTVDLDRILLMYNQSVYETADVIQTYVYRLAFASTGF 286 I +PS+ PTI ++ I+++GN + +++LLM N ET+D+IQT+VY Sbjct: 218 FRINIPSIMPTIVVLFILNIGNFMQIGFEKVLLMQNTLNSETSDIIQTFVYETGILQG-- 275 Query: 287 PEYSYGTAVNLLKSVVAYILVVGTNKLSTKYSDTRLF 323 +YS+ AV L +S + +L++ N+++ K S+ L+ Sbjct: 276 -QYSFAAAVGLFESAINIVLLITVNQIARKVSENSLW 311 >ref|NP_241350.1| transmembrane lipoprotein [Bacillus halodurans] pir||D83710 transmembrane lipoprotein BH0484 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04203.1| transmembrane lipoprotein [Bacillus halodurans] Length = 325 Score = 229 bits (583), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 121/323 (37%), Positives = 200/323 (61%), Gaps = 4/323 (1%) Query: 2 VEKVITSERMTP-LPQKTRIRRFLAYMNTNKXXXXXXXXXXXXXXXFKLAPLGGMIIAFQ 60 VE+ + E P +P+K R ++ L + NK FK P+ G+IIAFQ Sbjct: 6 VEQALPIESAAPSIPKKVRRQQKLKRIFRNKYLYLMILPGLVYFLIFKYVPMWGLIIAFQ 65 Query: 61 DFSAFRGVLGSPFVGLEHFQRIFEDPYIWTLVKNTIILAFYSLLFTFPIPILFALLLNEV 120 D+ F GV GS +VG +HF+R+F +P + L++NT++L Y+L+F FP+PI+ A+LLNE+ Sbjct: 66 DYQPFLGVTGSEWVGFKHFERLFTEPTFFQLLRNTLVLFLYNLIFFFPVPIILAVLLNEI 125 Query: 121 RVRWIKGSVQSLSFLPYFISSAVMVSILYTLLSPSTGLVNDILARFGLDTIYFVAEPGWF 180 R+ K VQ++ ++P+F+S ++VS+ Y L + G++N+I+ + F+ WF Sbjct: 126 RLMVFKRFVQTMIYIPHFMSWVIVVSLTYVLFTTDGGVINEIIYSITGKNVNFLMSEDWF 185 Query: 181 RSNYVLLQVWQTFGYSAIVYIAAMAAIDPSVYESASLDGASRFQQMLHITLPSLKPTIAI 240 R Y+L +W+ G++ I+Y AA+AAIDPS+YE+A +DGA+RF+Q+ HITLP+++ I + Sbjct: 186 RPLYILQVIWREAGWATIIYFAAIAAIDPSLYEAAKMDGANRFRQIWHITLPAIRSVIVV 245 Query: 241 MLIISVGNIFTVDLDRILLMYNQSVYETADVIQTYVYRLAFASTGFPEYSYGTAVNLLKS 300 +LI+ +G+I + + + LM N E A++ TYVY ++SY TAV KS Sbjct: 246 LLILKIGDILELGFEHVFLMLNAMNREVAEIFDTYVYTAGLKEG---QFSYSTAVGFFKS 302 Query: 301 VVAYILVVGTNKLSTKYSDTRLF 323 +V I+V+ N L+ K+ + ++ Sbjct: 303 IVGLIMVMLANWLAKKFGEEGVY 325 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.327 0.141 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 416,716,127 Number of extensions: 15453501 Number of successful extensions: 54843 Number of sequences better than 1.0e-05: 1058 Number of HSP's gapped: 54123 Number of HSP's successfully gapped: 1058 Length of query: 323 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 197 Effective length of database: 415,135,104 Effective search space: 81781615488 Effective search space used: 81781615488 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 126 (53.1 bits)